HG10009651 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10009651
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionIleal sodium/bile acid cotransporter, putative
LocationChr06: 8514375 .. 8514818 (+)
RNA-Seq ExpressionHG10009651
SyntenyHG10009651
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGATCTCTATTCCTTCATCACAGCAATTAATGAAAGAAATCCTGGAATCAACAGCTTACCGATTTCTATCATAATGCAGAGGCCTCCACCAGCCAACAGCTCTCAGACTTGGAATAATCTTGGGAAGACAATTCTTGGCCTTACTTTTCAGGCAGTTTTAACCTTGTTCATTAGCACACCAAGGTCATCCCCTCCAGTTTTTACACACCTCTTTGGGGCTGCAGCGTTGATTAGCTTTGCAGTTTCATTTGCTGGACTTTTCCTTCAAAATGCATTCCCAAGAATCGCGTGTTTGTTCGGAAAGATCGGTGCTCTTATCGCTGCAATTGGTGTGTGCATCATAGCAAGTCTTCTTCTAATCCATCAGAACTTTGCTTGGATCTCTTGGCTGGCATGTGGCCTCTCCTTGATGGCTTTTATTCTATCATTTAAAGGGTAG

mRNA sequence

ATGAATGATCTCTATTCCTTCATCACAGCAATTAATGAAAGAAATCCTGGAATCAACAGCTTACCGATTTCTATCATAATGCAGAGGCCTCCACCAGCCAACAGCTCTCAGACTTGGAATAATCTTGGGAAGACAATTCTTGGCCTTACTTTTCAGGCAGTTTTAACCTTGTTCATTAGCACACCAAGGTCATCCCCTCCAGTTTTTACACACCTCTTTGGGGCTGCAGCGTTGATTAGCTTTGCAGTTTCATTTGCTGGACTTTTCCTTCAAAATGCATTCCCAAGAATCGCGTGTTTGTTCGGAAAGATCGGTGCTCTTATCGCTGCAATTGGTGTGTGCATCATAGCAAGTCTTCTTCTAATCCATCAGAACTTTGCTTGGATCTCTTGGCTGGCATGTGGCCTCTCCTTGATGGCTTTTATTCTATCATTTAAAGGGTAG

Coding sequence (CDS)

ATGAATGATCTCTATTCCTTCATCACAGCAATTAATGAAAGAAATCCTGGAATCAACAGCTTACCGATTTCTATCATAATGCAGAGGCCTCCACCAGCCAACAGCTCTCAGACTTGGAATAATCTTGGGAAGACAATTCTTGGCCTTACTTTTCAGGCAGTTTTAACCTTGTTCATTAGCACACCAAGGTCATCCCCTCCAGTTTTTACACACCTCTTTGGGGCTGCAGCGTTGATTAGCTTTGCAGTTTCATTTGCTGGACTTTTCCTTCAAAATGCATTCCCAAGAATCGCGTGTTTGTTCGGAAAGATCGGTGCTCTTATCGCTGCAATTGGTGTGTGCATCATAGCAAGTCTTCTTCTAATCCATCAGAACTTTGCTTGGATCTCTTGGCTGGCATGTGGCCTCTCCTTGATGGCTTTTATTCTATCATTTAAAGGGTAG

Protein sequence

MNDLYSFITAINERNPGINSLPISIIMQRPPPANSSQTWNNLGKTILGLTFQAVLTLFISTPRSSPPVFTHLFGAAALISFAVSFAGLFLQNAFPRIACLFGKIGALIAAIGVCIIASLLLIHQNFAWISWLACGLSLMAFILSFKG
Homology
BLAST of HG10009651 vs. NCBI nr
Match: KAA0050246.1 (putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ98160.1 putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa])

HSP 1 Score: 230.3 bits (586), Expect = 1.0e-56
Identity = 121/147 (82.31%), Postives = 131/147 (89.12%), Query Frame = 0

Query: 1   MNDLYSFITAINERNPGINSLPISIIMQRPPPANSSQTWNNLGKTILGLTFQAVLTLFIS 60
           MN+LYSFITAINERNP INSLPI I MQRP PANSS+T NN+GKTILGLTFQAVL LFI+
Sbjct: 1   MNELYSFITAINERNPEINSLPICITMQRPSPANSSKTENNVGKTILGLTFQAVLALFIT 60

Query: 61  TPRSSPPVFTHLFGAAALISFAVSFAGLFLQNAFPRIACLFGKIGALIAAIGVCIIASLL 120
           +P SSPP+ THLF AA LISFAVSFAG+FLQN FPRIA LF KIGALIAAIGVCI+AS L
Sbjct: 61  SPNSSPPLLTHLFAAAVLISFAVSFAGIFLQNGFPRIALLFEKIGALIAAIGVCIVAS-L 120

Query: 121 LIHQNFAWISWLACGLSLMAFILSFKG 148
           LIHQNFAWISWLA G SLMAF+LSF+G
Sbjct: 121 LIHQNFAWISWLASGFSLMAFVLSFRG 146

BLAST of HG10009651 vs. NCBI nr
Match: KGN49803.1 (hypothetical protein Csa_004681 [Cucumis sativus])

HSP 1 Score: 216.1 bits (549), Expect = 2.0e-52
Identity = 115/147 (78.23%), Postives = 126/147 (85.71%), Query Frame = 0

Query: 1   MNDLYSFITAINERNPGINSLPISIIMQRPPPANSSQTWNNLGKTILGLTFQAVLTLFIS 60
           MN LYS IT+INERNP IN LPI IIMQ   PANSS+T NN+G TILGLTFQAVL LFI+
Sbjct: 12  MNHLYSLITSINERNPEINGLPICIIMQTASPANSSKTENNVGTTILGLTFQAVLALFIT 71

Query: 61  TPRSSPPVFTHLFGAAALISFAVSFAGLFLQNAFPRIACLFGKIGALIAAIGVCIIASLL 120
           +  SSPP+ THLFGAA LISFAVSF G+FLQ+ FPRIA LF KIGALIAAIGVCI+AS L
Sbjct: 72  SSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIAAIGVCILAS-L 131

Query: 121 LIHQNFAWISWLACGLSLMAFILSFKG 148
           LIHQNFAWISWLACG SLMAF+LSF+G
Sbjct: 132 LIHQNFAWISWLACGFSLMAFLLSFRG 157

BLAST of HG10009651 vs. NCBI nr
Match: KAG6579137.1 (hypothetical protein SDJN03_23585, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 159.5 bits (402), Expect = 2.3e-35
Identity = 86/129 (66.67%), Postives = 99/129 (76.74%), Query Frame = 0

Query: 19  NSLPISIIMQR-PPPANSSQTWNNLGKTILGLTFQAVLTLFISTPRSSPPVFTHLFGAAA 78
           + LP +  M R PPP +SSQT NNLGK + GLTFQAVL LFIS P S PP+  H+F AA 
Sbjct: 23  DGLPPTTAMPRPPPPPDSSQTRNNLGKIVFGLTFQAVLALFISPPTSCPPLLMHIFAAAM 82

Query: 79  LISFAVSFAGLFLQNAFPRIACLFGKIGALIAAIGVCIIASLLLIHQNFAWISWLACGLS 138
           LISFA+S A LFLQ A+PRIA   GKIGAL+AAIG C I S+LL HQ+F+WI WLACG +
Sbjct: 83  LISFALSLAALFLQIAYPRIALSSGKIGALLAAIGACTITSVLLKHQHFSWIPWLACGFA 142

Query: 139 LMAFILSFK 147
           LMAFILSFK
Sbjct: 143 LMAFILSFK 151

BLAST of HG10009651 vs. NCBI nr
Match: KAG6579136.1 (hypothetical protein SDJN03_23584, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 151.8 bits (382), Expect = 4.7e-33
Identity = 79/110 (71.82%), Postives = 89/110 (80.91%), Query Frame = 0

Query: 37  QTWNNLGKTILGLTFQAVLTLFISTPRSSPPVFTHLFGAAALISFAVSFAGLFLQNAFPR 96
           Q  NNLGK + GLTFQAVL LFISTP S PP+  +LF AA LIS A+S A LFLQ AFPR
Sbjct: 30  QARNNLGKIVFGLTFQAVLALFISTPTSFPPLLINLFAAAMLISLALSLAALFLQTAFPR 89

Query: 97  IACLFGKIGALIAAIGVCIIASLLLIHQNFAWISWLACGLSLMAFILSFK 147
           IA  FGKIGA++AA+G CI+ASLLL HQNF+WI WLACG +LMAFILSFK
Sbjct: 90  IALSFGKIGAMLAAVGACIMASLLLKHQNFSWIPWLACGFALMAFILSFK 139

BLAST of HG10009651 vs. NCBI nr
Match: KGN49808.1 (hypothetical protein Csa_004650 [Cucumis sativus])

HSP 1 Score: 150.6 bits (379), Expect = 1.1e-32
Identity = 86/154 (55.84%), Postives = 105/154 (68.18%), Query Frame = 0

Query: 1   MNDLYSFITAINERNPGI-------NSLPISIIMQRPPPANSSQTWNNLGKTILGLTFQA 60
           M+   SFI  I++RN G+       N LP+ I MQ+ P A +  +   LGK IL L+FQA
Sbjct: 12  MSAFSSFIRTISQRNYGLGCCCTPSNCLPVFIRMQQSPQATADSS-QKLGKIILSLSFQA 71

Query: 61  VLTLFISTPRSS-PPVFTHLFGAAALISFAVSFAGLFLQNAFPRIACLFGKIGALIAAIG 120
           VL LFIS+P +S PP+  H F AA  ISFAVSFA LFL N+FPR A LF K+GAL +A G
Sbjct: 72  VLALFISSPPTSPPPLLIHFFAAAVFISFAVSFAALFLHNSFPRTAHLFEKVGALFSAFG 131

Query: 121 VCIIASLLLIHQNFAWISWLACGLSLMAFILSFK 147
           VC IAS LL+HQNFAWI W+AC  S++ F LSFK
Sbjct: 132 VCFIASFLLVHQNFAWICWVACTFSIIVFALSFK 164

BLAST of HG10009651 vs. ExPASy TrEMBL
Match: A0A5A7U7U1 (Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00420 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 5.1e-57
Identity = 121/147 (82.31%), Postives = 131/147 (89.12%), Query Frame = 0

Query: 1   MNDLYSFITAINERNPGINSLPISIIMQRPPPANSSQTWNNLGKTILGLTFQAVLTLFIS 60
           MN+LYSFITAINERNP INSLPI I MQRP PANSS+T NN+GKTILGLTFQAVL LFI+
Sbjct: 1   MNELYSFITAINERNPEINSLPICITMQRPSPANSSKTENNVGKTILGLTFQAVLALFIT 60

Query: 61  TPRSSPPVFTHLFGAAALISFAVSFAGLFLQNAFPRIACLFGKIGALIAAIGVCIIASLL 120
           +P SSPP+ THLF AA LISFAVSFAG+FLQN FPRIA LF KIGALIAAIGVCI+AS L
Sbjct: 61  SPNSSPPLLTHLFAAAVLISFAVSFAGIFLQNGFPRIALLFEKIGALIAAIGVCIVAS-L 120

Query: 121 LIHQNFAWISWLACGLSLMAFILSFKG 148
           LIHQNFAWISWLA G SLMAF+LSF+G
Sbjct: 121 LIHQNFAWISWLASGFSLMAFVLSFRG 146

BLAST of HG10009651 vs. ExPASy TrEMBL
Match: A0A0A0KJN8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136870 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 9.9e-53
Identity = 115/147 (78.23%), Postives = 126/147 (85.71%), Query Frame = 0

Query: 1   MNDLYSFITAINERNPGINSLPISIIMQRPPPANSSQTWNNLGKTILGLTFQAVLTLFIS 60
           MN LYS IT+INERNP IN LPI IIMQ   PANSS+T NN+G TILGLTFQAVL LFI+
Sbjct: 12  MNHLYSLITSINERNPEINGLPICIIMQTASPANSSKTENNVGTTILGLTFQAVLALFIT 71

Query: 61  TPRSSPPVFTHLFGAAALISFAVSFAGLFLQNAFPRIACLFGKIGALIAAIGVCIIASLL 120
           +  SSPP+ THLFGAA LISFAVSF G+FLQ+ FPRIA LF KIGALIAAIGVCI+AS L
Sbjct: 72  SSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFEKIGALIAAIGVCILAS-L 131

Query: 121 LIHQNFAWISWLACGLSLMAFILSFKG 148
           LIHQNFAWISWLACG SLMAF+LSF+G
Sbjct: 132 LIHQNFAWISWLACGFSLMAFLLSFRG 157

BLAST of HG10009651 vs. ExPASy TrEMBL
Match: A0A0A0KJP2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137410 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 5.1e-33
Identity = 86/154 (55.84%), Postives = 105/154 (68.18%), Query Frame = 0

Query: 1   MNDLYSFITAINERNPGI-------NSLPISIIMQRPPPANSSQTWNNLGKTILGLTFQA 60
           M+   SFI  I++RN G+       N LP+ I MQ+ P A +  +   LGK IL L+FQA
Sbjct: 12  MSAFSSFIRTISQRNYGLGCCCTPSNCLPVFIRMQQSPQATADSS-QKLGKIILSLSFQA 71

Query: 61  VLTLFISTPRSS-PPVFTHLFGAAALISFAVSFAGLFLQNAFPRIACLFGKIGALIAAIG 120
           VL LFIS+P +S PP+  H F AA  ISFAVSFA LFL N+FPR A LF K+GAL +A G
Sbjct: 72  VLALFISSPPTSPPPLLIHFFAAAVFISFAVSFAALFLHNSFPRTAHLFEKVGALFSAFG 131

Query: 121 VCIIASLLLIHQNFAWISWLACGLSLMAFILSFK 147
           VC IAS LL+HQNFAWI W+AC  S++ F LSFK
Sbjct: 132 VCFIASFLLVHQNFAWICWVACTFSIIVFALSFK 164

BLAST of HG10009651 vs. ExPASy TrEMBL
Match: A0A5D3BEH8 (Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00440 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 5.9e-29
Identity = 83/156 (53.21%), Postives = 97/156 (62.18%), Query Frame = 0

Query: 1   MNDLYSFITAINERNPGINS----------LPISIIMQRPPPANSSQTWNNLGKTILGLT 60
           MN+LYSFITA+  RNPGI+S          LPI I MQRP P NS Q     G T +   
Sbjct: 13  MNELYSFITAVTNRNPGISSCTWGTAASDCLPIYIKMQRPSPVNSPQ----FGNTFVSSN 72

Query: 61  FQAVLTLFISTPRSSPPVFTHLFGAAALISFAVSFAGLFLQNAFPRIACLFGKIGALIAA 120
           FQA+L LF++ P S PP+ + L G   L +F  SF G+ LQ  FP+IA L    GAL+AA
Sbjct: 73  FQAILGLFLNLPPSPPPL-SELIGTVMLTAFVFSFCGVLLQKPFPKIAHLLQMFGALLAA 132

Query: 121 IGVCIIASLLLIHQNFAWISWLACGLSLMAFILSFK 147
           IGVCI+ S LL H N  WI WLACGL L AFI SFK
Sbjct: 133 IGVCIMGSPLL-HPNLTWIRWLACGLILPAFITSFK 162

BLAST of HG10009651 vs. ExPASy TrEMBL
Match: A0A0A0KQ03 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136900 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 2.7e-26
Identity = 83/157 (52.87%), Postives = 95/157 (60.51%), Query Frame = 0

Query: 1   MNDLYSFITAINERNPGINS----------LPISIIMQRPPPANSSQTWNNLGKTILGLT 60
           MN L S I A+  RNPGI+S          LPI I MQRP P NS Q     G T L LT
Sbjct: 13  MNKLNSLIFAVTNRNPGISSCTWGGAASDCLPIYIKMQRPSPVNSPQ----FGNTFLSLT 72

Query: 61  FQAVLTLFIS-TPRSSPPVFTHLFGAAALISFAVSFAGLFLQNAFPRIACLFGKIGALIA 120
           FQA++ LF+S  P SS P+ + LF A  L SF  S+ G+ LQ  FP+ A L    GAL A
Sbjct: 73  FQAIVGLFLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPKTAQLLQTFGALFA 132

Query: 121 AIGVCIIASLLLIHQNFAWISWLACGLSLMAFILSFK 147
           AIG CII SLLL + NF WI WLA GL L AFI+SFK
Sbjct: 133 AIGTCIIGSLLL-YPNFTWICWLAAGLILPAFIISFK 164

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0050246.11.0e-5682.31putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ981... [more]
KGN49803.12.0e-5278.23hypothetical protein Csa_004681 [Cucumis sativus][more]
KAG6579137.12.3e-3566.67hypothetical protein SDJN03_23585, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6579136.14.7e-3371.82hypothetical protein SDJN03_23584, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN49808.11.1e-3255.84hypothetical protein Csa_004650 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7U7U15.1e-5782.31Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=119... [more]
A0A0A0KJN89.9e-5378.23Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136870 PE=4 SV=1[more]
A0A0A0KJP25.1e-3355.84Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137410 PE=4 SV=1[more]
A0A5D3BEH85.9e-2953.21Putative Ileal sodium/bile acid cotransporter OS=Cucumis melo var. makuwa OX=119... [more]
A0A0A0KQ032.7e-2652.87Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136900 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10009651.1HG10009651.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane