HG10009603 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10009603
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr06: 8064640 .. 8064837 (+)
RNA-Seq Expression	HG10009603
Synteny	HG10009603

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCCACCGTCACCGCCGCAACCACCGCCGCCGCCGCCGCAGCTCCTCGCTGGATCCCGAAACGTGGCCAGGTTCTCCGCCGTGTTCTTAGAAAACTATTTTTGTTCTGCCTCTGCTCCGCCGCCGACACGAGATCTCCTCCGCCGCCGCCGCTGCGATCCTTCCTCTCCTCCTCGTCCCGCGTTTTTCCTTAA

mRNA sequence

ATGGCTGCCACCGTCACCGCCGCAACCACCGCCGCCGCCGCCGCAGCTCCTCGCTGGATCCCGAAACGTGGCCAGGTTCTCCGCCGTGTTCTTAGAAAACTATTTTTGTTCTGCCTCTGCTCCGCCGCCGACACGAGATCTCCTCCGCCGCCGCCGCTGCGATCCTTCCTCTCCTCCTCGTCCCGCGTTTTTCCTTAA

Coding sequence (CDS)

ATGGCTGCCACCGTCACCGCCGCAACCACCGCCGCCGCCGCCGCAGCTCCTCGCTGGATCCCGAAACGTGGCCAGGTTCTCCGCCGTGTTCTTAGAAAACTATTTTTGTTCTGCCTCTGCTCCGCCGCCGACACGAGATCTCCTCCGCCGCCGCCGCTGCGATCCTTCCTCTCCTCCTCGTCCCGCGTTTTTCCTTAA

Protein sequence

MAATVTAATTAAAAAAPRWIPKRGQVLRRVLRKLFLFCLCSAADTRSPPPPPLRSFLSSSSRVFP

Homology

[Close]

BLAST of HG10009603 vs. NCBI nr
Match: KAG6579170.1 (hypothetical protein SDJN03_23618, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 69.3 bits (168), Expect = 1.4e-08
Identity = 39/65 (60.00%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 3  ATVTAATTAAAAAAPRWIPKRGQVLRRVLRKLFLFCLCSAADTRS--PPPPPLRSFLSSS 62
          A   A  TA A   PR IPKRG VLRRVL KLF FC+CSAA+ ++  PPPPP      SS
Sbjct: 2  AAAAATATAVAVTTPRLIPKRGAVLRRVLEKLFFFCICSAANPKAPPPPPPPPPPQFFSS 61

Query: 63 SRVFP 66
          SRVFP
Sbjct: 62 SRVFP 66

[Close]

BLAST of HG10009603 vs. NCBI nr
Match: KGN49746.1 (hypothetical protein Csa_017810 [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 8.3e-06
Identity = 33/51 (64.71%), Postives = 35/51 (68.63%), Query Frame = 0


Query: 14 AAAPRWIPKRGQVLRRVLRKLFLFCLCSAADTRSPPPPPLRSFLSSSSRVF 65
          A APRWIPKRG+VLRRVL+ LF FCLCS      PPP P      SSSRVF
Sbjct: 4  AEAPRWIPKRGEVLRRVLKNLFFFCLCS--PPALPPPTP------SSSRVF 46

[Close]

BLAST of HG10009603 vs. NCBI nr
Match: KAG6594821.1 (hypothetical protein SDJN03_11374, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 59.7 bits (143), Expect = 1.1e-05
Identity = 29/41 (70.73%), Postives = 31/41 (75.61%), Query Frame = 0


Query: 11 AAAAAAPRWIPKRGQVLRRVLRKLFLFCLCSAADTRSPPPP 52
          AA  AAPRWIPKRGQVLRR+L+KLF  C CS     SPPPP
Sbjct: 51 AATGAAPRWIPKRGQVLRRILKKLFFLCFCS-----SPPPP 86

[Close]

BLAST of HG10009603 vs. ExPASy TrEMBL
Match: A0A0A0KPU0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G098990 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.0e-06
Identity = 33/51 (64.71%), Postives = 35/51 (68.63%), Query Frame = 0


Query: 14 AAAPRWIPKRGQVLRRVLRKLFLFCLCSAADTRSPPPPPLRSFLSSSSRVF 65
          A APRWIPKRG+VLRRVL+ LF FCLCS      PPP P      SSSRVF
Sbjct: 4  AEAPRWIPKRGEVLRRVLKNLFFFCLCS--PPALPPPTP------SSSRVF 46

The following BLAST results are available for this feature:

BLAST of HG10009603 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6579170.1	1.4e-08	60.00	hypothetical protein SDJN03_23618, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN49746.1	8.3e-06	64.71	hypothetical protein Csa_017810 [Cucumis sativus]	[more]
KAG6594821.1	1.1e-05	70.73	hypothetical protein SDJN03_11374, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of HG10009603 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10009603 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPU0	4.0e-06	64.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G098990 PE=4 SV=1	[more]

BLAST of HG10009603 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10009603.1	HG10009603.1	mRNA