Homology
BLAST of HG10009574 vs. NCBI nr
Match:
XP_038875555.1 (probable RNA-dependent RNA polymerase 1 [Benincasa hispida])
HSP 1 Score: 2101.6 bits (5444), Expect = 0.0e+00
Identity = 1035/1121 (92.33%), Postives = 1068/1121 (95.27%), Query Frame = 0
Query: 13 MGKTIEIYGFRLEVTVDEVKEFLENHTGDGTVSTVRISKPKDEKARFTFATVRFGSKLAA 72
MGKTIEIYGFR EVTVDEVKEFLENHTGDGTV TVRISKPKDEK RFTF TVRF S+LAA
Sbjct: 1 MGKTIEIYGFRPEVTVDEVKEFLENHTGDGTVLTVRISKPKDEKTRFTFVTVRFKSELAA 60
Query: 73 EYIVAKATAAEKQLWFGSSYLKAREVERAVVAPVRGGGEMERMEDVKGHLGSLISKEKMR 132
EYIV KATAAEK+LWFGSSYLKAREVERA +P RGGGEMERMEDVKGHLGSLISK+KMR
Sbjct: 61 EYIVEKATAAEKKLWFGSSYLKAREVERA--SPARGGGEMERMEDVKGHLGSLISKDKMR 120
Query: 133 VIWEGENWNVEFGIGVRKLCFYLSYEVDDYKMELSFENILSVELRCPLNQPSKFFLIQLQ 192
VIWEGENWNVEFGIGVRKL FYLSYEV +YKMEL+FENIL VE RCPLNQPSKFFLIQLQ
Sbjct: 121 VIWEGENWNVEFGIGVRKLSFYLSYEV-EYKMELAFENILGVEFRCPLNQPSKFFLIQLQ 180
Query: 193 GAPRIFKKTLSSSSSRCYSKESTGFHWIRDVDFTPSSCIGQSFALCLELSPEHHLPTFFQ 252
GAPRIFKK+ SSSSSR S E F WIRDVDFTPSSCIGQSFALCLELSP HHLP FFQ
Sbjct: 181 GAPRIFKKSRSSSSSRLNSNEFC-FRWIRDVDFTPSSCIGQSFALCLELSPGHHLPPFFQ 240
Query: 253 TLVGYKETYAPFILQTGSSFSSISNLVPIITPPQAFDISYKILFKINALVQHGYLPGPTL 312
LVGYKETYAPFILQTGSSFSSISNLVPIITPP+ FDISYK LFKINALVQHGYLPGPTL
Sbjct: 241 NLVGYKETYAPFILQTGSSFSSISNLVPIITPPRGFDISYKTLFKINALVQHGYLPGPTL 300
Query: 313 DDEFFRLVDPSRFRPDFIEHALEKLFNMKECCYEPQKWLKHQYLSFYTSNQLPWKHNISL 372
DDEFFRLVD SRFRPD++EHALEK+FN+KECCYEPQKWLKH YLSFYTSNQLPWK NISL
Sbjct: 301 DDEFFRLVDSSRFRPDYVEHALEKMFNLKECCYEPQKWLKHHYLSFYTSNQLPWKPNISL 360
Query: 373 DDGLVYVHRVQITPSKVYFRGPEANLSNRVVRRFIDDIDNFIRVSFVDEELDKLHSIDLS 432
DDGLVYVHRVQITPSKVYFRGPEANLSNRVVRRFIDDIDNF+RVSFVDE+LDKLHSIDL+
Sbjct: 361 DDGLVYVHRVQITPSKVYFRGPEANLSNRVVRRFIDDIDNFLRVSFVDEDLDKLHSIDLA 420
Query: 433 PRSSSAESSARTRVYDRVLSVLRNGILIGDKKFEFLAFSASQLRENSFWMFASREGLSAA 492
PRSSSA +S RTRVYDR+LSVLRNGI+IGDKKFEFLAFSASQLRENSFWMFASREGLSAA
Sbjct: 421 PRSSSAGNSERTRVYDRILSVLRNGIVIGDKKFEFLAFSASQLRENSFWMFASREGLSAA 480
Query: 493 DIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKKIMYCFSDG 552
DIREWMGDFR+IRNVAKYAARLGQSFGSSRKTLCVEEHE EVIPDVEVERKK YCFSDG
Sbjct: 481 DIREWMGDFREIRNVAKYAARLGQSFGSSRKTLCVEEHEFEVIPDVEVERKKTKYCFSDG 540
Query: 553 IGKISKTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRKSMLKYMSLD 612
IGKISKTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAIDPT KKKLSLRKSMLKYMSLD
Sbjct: 541 IGKISKTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAIDPTLKKKLSLRKSMLKYMSLD 600
Query: 613 TQLDVLLWSKYQPCFLNRQVINLLSTLGIKDRVFEKKQKEAIEQLDSILDDPSRALEVLE 672
TQLDVLLWSKYQPCFLNRQVINLLSTLGIKDRVF KKQKEAI+QLDSIL+DPS+ALEVLE
Sbjct: 601 TQLDVLLWSKYQPCFLNRQVINLLSTLGIKDRVFVKKQKEAIDQLDSILEDPSKALEVLE 660
Query: 673 LMSPGEMTSILKELLLFYKPNEEPFLNMMLRTLRADKLLDLRTKSRIFVPKGRTMMGCLD 732
LMSPGEMT ILKELLLFYKPNEEPFLNMMLRT RADK LDLRTKSRIFVPKGRTMMGCLD
Sbjct: 661 LMSPGEMTGILKELLLFYKPNEEPFLNMMLRTFRADKFLDLRTKSRIFVPKGRTMMGCLD 720
Query: 733 ETRTLEYGQVFVHCSVPGRSSESNFIVKGKVVVAKNPCLHPGDVRVLDAVDVKALHHMVD 792
ETRTLEYGQVFVHCS+PGRS+ESNF++KGKVVVAKNPCLHPGDVRVLDAVDVKALHHMVD
Sbjct: 721 ETRTLEYGQVFVHCSIPGRSNESNFVIKGKVVVAKNPCLHPGDVRVLDAVDVKALHHMVD 780
Query: 793 CVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIKPVKPMSYEPAPTMQLDHDVTIE 852
CVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIKPVKPMSYEPAPTMQLDHDVTIE
Sbjct: 781 CVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIKPVKPMSYEPAPTMQLDHDVTIE 840
Query: 853 EVQEYLANYMVNDGLGAIANAHTVFADKKPKKAMSAECIKLAKLFSIAVDFPKTGVPANL 912
EVQEYLANYMVNDGLGAIANAHTVFADK PKKAMS ECIKLAKLFSIAVDFPKTGVPANL
Sbjct: 841 EVQEYLANYMVNDGLGAIANAHTVFADKNPKKAMSTECIKLAKLFSIAVDFPKTGVPANL 900
Query: 913 PRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTLEIFTREVATKCYDPDM 972
PRNLRVHEYPDFMDKPNKPTY SNGVLGKLF+GVKDVSSDVNTLEIFTREVA CYDPDM
Sbjct: 901 PRNLRVHEYPDFMDKPNKPTYASNGVLGKLFQGVKDVSSDVNTLEIFTREVAINCYDPDM 960
Query: 973 EVDGFAKYLREAFDYKTRYDFKLGNLMDYYGIKTEPELVSGNILRMAKSFDKRNDLEQIV 1032
EVDGF KYL EAFDYKTRYDFKLGNLMDYYGIKTEPELVSGNILRMAKSFDKRNDLEQI
Sbjct: 961 EVDGFDKYLSEAFDYKTRYDFKLGNLMDYYGIKTEPELVSGNILRMAKSFDKRNDLEQIT 1020
Query: 1033 FAMKSLRKEARAWFNEKGNKFTYNDNKDEGQEYAKASAWYHVTYHPDYWGRYNEGMQRDH 1092
FAMKSLRKEARAWFNEKG+K TY+++K E +EYAKASAWYHVTYHPDYWGRYNEGMQRDH
Sbjct: 1021 FAMKSLRKEARAWFNEKGSKSTYDNSKGEEEEYAKASAWYHVTYHPDYWGRYNEGMQRDH 1080
Query: 1093 FLSFPWCVADKLIQIKREKTSLMNFSPMSSLIHKFGGLSLY 1134
FLSFPWCVADKLIQIKREKT LM+ SPMSSLIHKFG LSLY
Sbjct: 1081 FLSFPWCVADKLIQIKREKTLLMSSSPMSSLIHKFGSLSLY 1117
BLAST of HG10009574 vs. NCBI nr
Match:
ALM88235.1 (RNA-dependent RNA polymerase 1c [Cucumis sativus])
HSP 1 Score: 1982.6 bits (5135), Expect = 0.0e+00
Identity = 978/1114 (87.79%), Postives = 1029/1114 (92.37%), Query Frame = 0
Query: 13 MGKTIEIYGFRLEVTVDEVKEFLENHTGDGTVSTVRISKPKDEKARFTFATVRFGSKLAA 72
MGKTIEIYGFR +VT DEVKEFLENHTGDGTVSTVRISKPKDEKARFT TV F SKLAA
Sbjct: 1 MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60
Query: 73 EYIVAKATAAEKQLWFGSSYLKAREVERAVVA-PVRGGGEMERMEDVKGHLGSLISKEKM 132
EYIVAK+T E++LWF SSYLKARE+E+AVVA +G EMERMEDVKGHLGS+IS KM
Sbjct: 61 EYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLEMERMEDVKGHLGSMISNGKM 120
Query: 133 RVIWEGENWNVEFGIGVRKLCFYLSYEVDDYKMELSFENILSVELRCPLNQPSKFFLIQL 192
RVIWEGE W+VEFG G RKL FYLSYEVD+YKMEL FENILSVE RCPLN+PSKFFLIQL
Sbjct: 121 RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL 180
Query: 193 QGAPRIFKKTLSSSSSRCYSKESTGFHWIRDVDFTPSSCIGQSFALCLELSPEHHLPTFF 252
QGAPRIF+KT SSSSS YS +ST F WIRDVDFTPSSCIGQSF +CL+LSP HHLP FF
Sbjct: 181 QGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF 240
Query: 253 QTLVGYKETYAPFILQTGSSFSSISNLVPIITPPQAFDISYKILFKINALVQHGYLPGPT 312
QTLVGYK TYAPFIL GSS S SNLVPIITPPQAFDISYKILFKINAL+QHGYL GPT
Sbjct: 241 QTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT 300
Query: 313 LDDEFFRLVDPSRFRPDFIEHALEKLFNMKECCYEPQKWLKHQYLSFYTSNQLPWKHNIS 372
LDDEFFRLVD SRF D+IEHALEKLFN+KECCY+PQKWLK QYLS+YTSNQLPWK NIS
Sbjct: 301 LDDEFFRLVDSSRFHSDYIEHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNIS 360
Query: 373 LDDGLVYVHRVQITPSKVYFRGPEANLSNRVVRRFIDDIDNFIRVSFVDEELDKLHSIDL 432
LDDGLVYVHRVQITP KVYF GPEANLSNRVVRRFI DIDNF+RVSFVDEELDKLHSIDL
Sbjct: 361 LDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDL 420
Query: 433 SPRSSSAESSARTRVYDRVLSVLRNGILIGDKKFEFLAFSASQLRENSFWMFASREGLSA 492
+PRSSS E+S RTRVYDRV+S+L+NGI+IG+KKFEFLAFSASQLRENSFWMFASREGLSA
Sbjct: 421 APRSSSPENSQRTRVYDRVISILKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSA 480
Query: 493 ADIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKKIMYCFSD 552
ADIREWMGDF IRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERK IMYCFSD
Sbjct: 481 ADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIMYCFSD 540
Query: 553 GIGKISKTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRKSMLKYMSL 612
GIGKISKTLA+KVAEKCGL SHTPSAFQIRYAGYKGVVAIDPTS+KKLSLRKSMLKYMSL
Sbjct: 541 GIGKISKTLAKKVAEKCGLTSHTPSAFQIRYAGYKGVVAIDPTSEKKLSLRKSMLKYMSL 600
Query: 613 DTQLDVLLWSKYQPCFLNRQVINLLSTLGIKDRVFEKKQKEAIEQLDSILDDPSRALEVL 672
DTQLDVLLWSKYQPCFLNRQVINLLSTLGI+D VF KKQKEAI+QLDSIL+DPSRALEVL
Sbjct: 601 DTQLDVLLWSKYQPCFLNRQVINLLSTLGIRDDVFVKKQKEAIDQLDSILEDPSRALEVL 660
Query: 673 ELMSPGEMTSILKELLLFYKPNEEPFLNMMLRTLRADKLLDLRTKSRIFVPKGRTMMGCL 732
ELMSPGEMTSILKELL FY PN+EPFLNMMLRT RADKLLDLRTKSRIFVPKGRTMMGCL
Sbjct: 661 ELMSPGEMTSILKELLSFYMPNQEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMGCL 720
Query: 733 DETRTLEYGQVFVHCSVPGRSSESNFIVKGKVVVAKNPCLHPGDVRVLDAVDVKALHHMV 792
DET+TLEYGQVFVHCS+PGRSSE NF+VKGKVVVAKNPCLHPGDVR+LDA+DVKALHHMV
Sbjct: 721 DETQTLEYGQVFVHCSIPGRSSEGNFVVKGKVVVAKNPCLHPGDVRLLDAIDVKALHHMV 780
Query: 793 DCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIKPVKPMSYEPAPTMQLDHDVTI 852
DCVVFPQKGKRPHPNECSGSDLDGDLYFVCWD ELTCIK VKPMSY+PAPT+QLDHDVTI
Sbjct: 781 DCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDTELTCIKQVKPMSYKPAPTIQLDHDVTI 840
Query: 853 EEVQEYLANYMVNDGLGAIANAHTVFADKKPKKAMSAECIKLAKLFSIAVDFPKTGVPAN 912
EEVQEY ANYMVNDGLGAIANAHTVFADK KKAMSAECIKLAKLFSIAVDFPKTGVPAN
Sbjct: 841 EEVQEYFANYMVNDGLGAIANAHTVFADKNSKKAMSAECIKLAKLFSIAVDFPKTGVPAN 900
Query: 913 LPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTLEIFTREVATKCYDPD 972
LPRNLRVHEYPDFMDKPNK TYVSNGVLGKLFRGVKDVSSDV+ EIFTREVATKCYDPD
Sbjct: 901 LPRNLRVHEYPDFMDKPNKATYVSNGVLGKLFRGVKDVSSDVSAFEIFTREVATKCYDPD 960
Query: 973 MEVDGFAKYLREAFDYKTRYDFKLGNLMDYYGIKTEPELVSGNILRMAKSFDKRNDLEQI 1032
MEVDGF KYLREAFDYKT+YDFKLGNLMDYYGIKTEPELVSGNIL+MAKSFDKR DLEQI
Sbjct: 961 MEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNILKMAKSFDKRKDLEQI 1020
Query: 1033 VFAMKSLRKEARAWFNEKGNKFTYNDNKDEGQEYAKASAWYHVTYHPDYWGRYNEGMQRD 1092
FAMKSLRKE R WFNE +K TY+D +D EYA+ASAWY VTYHPDYWG YNEG +RD
Sbjct: 1021 AFAMKSLRKEVRFWFNENESKSTYDDIQD---EYARASAWYCVTYHPDYWGCYNEGTKRD 1080
Query: 1093 HFLSFPWCVADKLIQIKREKTSLMNFSPMSSLIH 1126
HFLSFPWCVADKLIQIKREK S+ N SP SSL+H
Sbjct: 1081 HFLSFPWCVADKLIQIKREKMSMRNSSPKSSLLH 1111
BLAST of HG10009574 vs. NCBI nr
Match:
XP_031740912.1 (probable RNA-dependent RNA polymerase 1 [Cucumis sativus] >KGN52010.2 hypothetical protein Csa_008596 [Cucumis sativus])
HSP 1 Score: 1982.6 bits (5135), Expect = 0.0e+00
Identity = 978/1114 (87.79%), Postives = 1029/1114 (92.37%), Query Frame = 0
Query: 13 MGKTIEIYGFRLEVTVDEVKEFLENHTGDGTVSTVRISKPKDEKARFTFATVRFGSKLAA 72
MGKTIEIYGFR +VT DEVKEFLENHTGDGTVSTVRISKPKDEKARFT TV F SKLAA
Sbjct: 1 MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60
Query: 73 EYIVAKATAAEKQLWFGSSYLKAREVERAVVA-PVRGGGEMERMEDVKGHLGSLISKEKM 132
EYIVAK+T E++LWF SSYLKARE+E+AVVA +G EMERMEDVKGHLGS+IS KM
Sbjct: 61 EYIVAKSTTEERKLWFESSYLKARELEKAVVAKETKGVLEMERMEDVKGHLGSMISNGKM 120
Query: 133 RVIWEGENWNVEFGIGVRKLCFYLSYEVDDYKMELSFENILSVELRCPLNQPSKFFLIQL 192
RVIWEGE W+VEFG G RKL FYLSYEVD+YKMEL FENILSVE RCPLN+PSKFFLIQL
Sbjct: 121 RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL 180
Query: 193 QGAPRIFKKTLSSSSSRCYSKESTGFHWIRDVDFTPSSCIGQSFALCLELSPEHHLPTFF 252
QGAPRIF+KT SSSSS YS +ST F WIRDVDFTPSSCIGQSF +CL+LSP HHLP FF
Sbjct: 181 QGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF 240
Query: 253 QTLVGYKETYAPFILQTGSSFSSISNLVPIITPPQAFDISYKILFKINALVQHGYLPGPT 312
QTLVGYK TYAPFIL GSS S SNLVPIITPPQAFDISYKILFKINAL+QHGYL GPT
Sbjct: 241 QTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT 300
Query: 313 LDDEFFRLVDPSRFRPDFIEHALEKLFNMKECCYEPQKWLKHQYLSFYTSNQLPWKHNIS 372
LDDEFFRLVD SRF D+IEHALEKLFN+KECCY+PQKWLK QYLS+YTSNQLPWK NIS
Sbjct: 301 LDDEFFRLVDSSRFHSDYIEHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNIS 360
Query: 373 LDDGLVYVHRVQITPSKVYFRGPEANLSNRVVRRFIDDIDNFIRVSFVDEELDKLHSIDL 432
LDDGLVYVHRVQITP KVYF GPEANLSNRVVRRFI DIDNF+RVSFVDEELDKLHSIDL
Sbjct: 361 LDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDL 420
Query: 433 SPRSSSAESSARTRVYDRVLSVLRNGILIGDKKFEFLAFSASQLRENSFWMFASREGLSA 492
+PRSSS E+S RTRVYDRV+S+L+NGI+IG+KKFEFLAFSASQLRENSFWMFASREGLSA
Sbjct: 421 APRSSSPENSQRTRVYDRVISILKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSA 480
Query: 493 ADIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKKIMYCFSD 552
ADIREWMGDF IRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERK IMYCFSD
Sbjct: 481 ADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIMYCFSD 540
Query: 553 GIGKISKTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRKSMLKYMSL 612
GIGKISKTLA+KVAEKCGL SHTPSAFQIRYAGYKGVVAIDPTS+KKLSLRKSMLKYMSL
Sbjct: 541 GIGKISKTLAKKVAEKCGLTSHTPSAFQIRYAGYKGVVAIDPTSEKKLSLRKSMLKYMSL 600
Query: 613 DTQLDVLLWSKYQPCFLNRQVINLLSTLGIKDRVFEKKQKEAIEQLDSILDDPSRALEVL 672
DTQLDVLLWSKYQPCFLNRQVINLLSTLGI+D VF KKQKEAI+QLDSIL+DPSRALEVL
Sbjct: 601 DTQLDVLLWSKYQPCFLNRQVINLLSTLGIRDDVFVKKQKEAIDQLDSILEDPSRALEVL 660
Query: 673 ELMSPGEMTSILKELLLFYKPNEEPFLNMMLRTLRADKLLDLRTKSRIFVPKGRTMMGCL 732
ELMSPGEMTSILKELL FY PN+EPFLNMMLRT RADKLLDLRTKSRIFVPKGRTMMGCL
Sbjct: 661 ELMSPGEMTSILKELLSFYMPNQEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMGCL 720
Query: 733 DETRTLEYGQVFVHCSVPGRSSESNFIVKGKVVVAKNPCLHPGDVRVLDAVDVKALHHMV 792
DET+TLEYGQVFVHCS+PGRSSE NF+VKGKVVVAKNPCLHPGDVR+LDA+DVKALHHMV
Sbjct: 721 DETQTLEYGQVFVHCSIPGRSSEGNFVVKGKVVVAKNPCLHPGDVRLLDAIDVKALHHMV 780
Query: 793 DCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIKPVKPMSYEPAPTMQLDHDVTI 852
DCVVFPQKGKRPHPNECSGSDLDGDLYFVCWD ELTCIK VKPMSY+PAPT+QLDHDVTI
Sbjct: 781 DCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDTELTCIKQVKPMSYKPAPTIQLDHDVTI 840
Query: 853 EEVQEYLANYMVNDGLGAIANAHTVFADKKPKKAMSAECIKLAKLFSIAVDFPKTGVPAN 912
EEVQEY ANYMVNDGLGAIANAHTVFADK KKAMSAECIKLAKLFSIAVDFPKTGVPAN
Sbjct: 841 EEVQEYFANYMVNDGLGAIANAHTVFADKNSKKAMSAECIKLAKLFSIAVDFPKTGVPAN 900
Query: 913 LPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTLEIFTREVATKCYDPD 972
LPRNLRVHEYPDFMDKPNK TYVSNGVLGKLFRGVKDVSSDV+ EIFTREVATKCYDPD
Sbjct: 901 LPRNLRVHEYPDFMDKPNKATYVSNGVLGKLFRGVKDVSSDVSAFEIFTREVATKCYDPD 960
Query: 973 MEVDGFAKYLREAFDYKTRYDFKLGNLMDYYGIKTEPELVSGNILRMAKSFDKRNDLEQI 1032
MEVDGF KYLREAFDYKT+YDFKLGNLMDYYGIKTEPELVSGNIL+MAKSFDKR DLEQI
Sbjct: 961 MEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNILKMAKSFDKRKDLEQI 1020
Query: 1033 VFAMKSLRKEARAWFNEKGNKFTYNDNKDEGQEYAKASAWYHVTYHPDYWGRYNEGMQRD 1092
FAMKSLRKE R WFNE +K TY+D +D EYA+ASAWY VTYHPDYWG YNEG +RD
Sbjct: 1021 AFAMKSLRKEVRFWFNENESKSTYDDIQD---EYARASAWYCVTYHPDYWGCYNEGTKRD 1080
Query: 1093 HFLSFPWCVADKLIQIKREKTSLMNFSPMSSLIH 1126
HFLSFPWCVADKLIQIKREK S+ N SP SSL+H
Sbjct: 1081 HFLSFPWCVADKLIQIKREKMSMRNSSPKSSLLH 1111
BLAST of HG10009574 vs. NCBI nr
Match:
ADN33705.1 (RNA-dependent RNA polymerase [Cucumis melo subsp. melo])
HSP 1 Score: 1981.8 bits (5133), Expect = 0.0e+00
Identity = 983/1142 (86.08%), Postives = 1035/1142 (90.63%), Query Frame = 0
Query: 13 MGKTIEIYGFRLEVTVDEVKEFLENHTGDGTVSTVRISKPKDEKARFTFATVRFGSKLAA 72
M KTIEIYGF +VTVDEVKEFLENHTGDGTVSTVRISKPKD+K RFT TVRF SKLAA
Sbjct: 1 MEKTIEIYGFGPKVTVDEVKEFLENHTGDGTVSTVRISKPKDDKTRFTSVTVRFKSKLAA 60
Query: 73 EYIVAKATAAEKQLWFGSSYLKAREVERAVVAPVRGGGEMERMEDVKGHLGSLISKEKMR 132
EYIVAKAT EK+LWF SSYLKAREVE+ + GG EMERMEDVKG LGS+ISK+KMR
Sbjct: 61 EYIVAKATTEEKKLWFESSYLKAREVEKKATS---GGPEMERMEDVKGQLGSMISKDKMR 120
Query: 133 VIWEGENWNVEFGIGVRKLCFYLSYEVDDYKMELSFENILSVELRCPLNQPSKFFLIQLQ 192
VIWEGE WNVEFG GVRKL FYLSYEVDDYKMEL FENILSVE RCPLNQPSKFFLIQ+
Sbjct: 121 VIWEGEKWNVEFGNGVRKLWFYLSYEVDDYKMELCFENILSVEFRCPLNQPSKFFLIQVS 180
Query: 193 G---------------------APRIFKKTLSSSSSRCYSKESTGFHWIRDVDFTPSSCI 252
APRIF+KT SSSSS YS ES F WIRDVDFTPSSCI
Sbjct: 181 SFFLSFFSFFLSFLSLLKLQCRAPRIFRKTPSSSSSPLYSNESNSFRWIRDVDFTPSSCI 240
Query: 253 GQSFALCLELSPEHHLPTFFQTLVGYKETYAPFILQTGSSFSSISNLVPIITPPQAFDIS 312
GQSF LCL+ SP HHLP FFQTLVGYK TY PFIL+ GSSF S SNLVPIITPPQAFDIS
Sbjct: 241 GQSFTLCLQFSPSHHLPPFFQTLVGYKVTYDPFILRKGSSFVSNSNLVPIITPPQAFDIS 300
Query: 313 YKILFKINALVQHGYLPGPTLDDEFFRLVDPSRFRPDFIEHALEKLFNMKECCYEPQKWL 372
YKILFKINAL+Q GYL GPTLDDEFFRLVD SRF PD+IEHALEKLFN+KECCY+PQKWL
Sbjct: 301 YKILFKINALLQRGYLSGPTLDDEFFRLVDSSRFHPDYIEHALEKLFNLKECCYKPQKWL 360
Query: 373 KHQYLSFYTSNQLPWKHNISLDDGLVYVHRVQITPSKVYFRGPEANLSNRVVRRFIDDID 432
K QYLS+Y SNQLPWK N+SLDDGLVYVHRVQITP KVYF GPEANLSNRVVRRFIDDID
Sbjct: 361 KDQYLSYYVSNQLPWKPNVSLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIDDID 420
Query: 433 NFIRVSFVDEELDKLHSIDLSPRSSSAESSARTRVYDRVLSVLRNGILIGDKKFEFLAFS 492
NF+RVSFVDEELDKLHSIDL+PRSSS E++ RTRVYDRV+SVL+NGI+IGDKKFEFLAFS
Sbjct: 421 NFLRVSFVDEELDKLHSIDLAPRSSSPENNTRTRVYDRVVSVLKNGIVIGDKKFEFLAFS 480
Query: 493 ASQLRENSFWMFASREGLSAADIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVEEHE 552
ASQLRENSFWMFASR+GLSAADIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCV+EHE
Sbjct: 481 ASQLRENSFWMFASRKGLSAADIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVKEHE 540
Query: 553 IEVIPDVEVERKKIMYCFSDGIGKISKTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAI 612
IEVIPDVEVERK IMYCFSDGIGKISKTLA+KVA+KCGL HTPSAFQIRYAGYKGVVAI
Sbjct: 541 IEVIPDVEVERKNIMYCFSDGIGKISKTLAKKVAKKCGLTGHTPSAFQIRYAGYKGVVAI 600
Query: 613 DPTSKKKLSLRKSMLKYMSLDTQLDVLLWSKYQPCFLNRQVINLLSTLGIKDRVFEKKQK 672
DPTS+KKLSLRKSMLKYMSLDTQLDVLLWSKYQPCFLNRQVINLLSTLGI D VF KKQK
Sbjct: 601 DPTSEKKLSLRKSMLKYMSLDTQLDVLLWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQK 660
Query: 673 EAIEQLDSILDDPSRALEVLELMSPGEMTSILKELLLFYKPNEEPFLNMMLRTLRADKLL 732
EAI+QLDSIL+DPSRALEVLELMSPGEMTSILKELL FY PNEEPFLNMML T RA+KLL
Sbjct: 661 EAIDQLDSILEDPSRALEVLELMSPGEMTSILKELLSFYMPNEEPFLNMMLWTFRANKLL 720
Query: 733 DLRTKSRIFVPKGRTMMGCLDETRTLEYGQVFVHCSVPGRSSESNFIVKGKVVVAKNPCL 792
DL+TKSRIFVP+GRTMMGCLDETRTLEYGQVFVHCSVPGRSSE NF+VKGKVVVAKNPCL
Sbjct: 721 DLKTKSRIFVPRGRTMMGCLDETRTLEYGQVFVHCSVPGRSSEGNFVVKGKVVVAKNPCL 780
Query: 793 HPGDVRVLDAVDVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIKP 852
HPGDVR+LDA+DVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWD ELTCIK
Sbjct: 781 HPGDVRLLDAIDVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDSELTCIKQ 840
Query: 853 VKPMSYEPAPTMQLDHDVTIEEVQEYLANYMVNDGLGAIANAHTVFADKKPKKAMSAECI 912
VKPMSYEPAP++QLDHDVTIEEVQ+Y ANYMVNDGLGAIANAHTVFADK KKAMSAECI
Sbjct: 841 VKPMSYEPAPSIQLDHDVTIEEVQKYFANYMVNDGLGAIANAHTVFADKNSKKAMSAECI 900
Query: 913 KLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSS 972
KLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKP+KPTYVSNGVLGKLFRGVKDVSS
Sbjct: 901 KLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPDKPTYVSNGVLGKLFRGVKDVSS 960
Query: 973 DVNTLEIFTREVATKCYDPDMEVDGFAKYLREAFDYKTRYDFKLGNLMDYYGIKTEPELV 1032
DVNT EIFT+EVATKCYDPDMEVDGF KYLREAFDYKT+YDFKLGNLMDYYGIKTEPELV
Sbjct: 961 DVNTFEIFTKEVATKCYDPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELV 1020
Query: 1033 SGNILRMAKSFDKRNDLEQIVFAMKSLRKEARAWFNEKGNKFTYNDNKDEGQEYAKASAW 1092
SGNIL+MAKSFDKRNDLEQI FAMKSLRKE R+WFNE +K+TY D +D+ EYA+ASAW
Sbjct: 1021 SGNILKMAKSFDKRNDLEQIAFAMKSLRKEVRSWFNENESKYTYEDIEDD--EYARASAW 1080
Query: 1093 YHVTYHPDYWGRYNEGMQRDHFLSFPWCVADKLIQIKREKTSLMNFSPMSSLIHKFGGLS 1134
Y VTYHPDYWGRYNEG QRDHFLSFPWCVADKLIQIKREK SL N SPMSSL + F G+S
Sbjct: 1081 YCVTYHPDYWGRYNEGTQRDHFLSFPWCVADKLIQIKREKMSLRNSSPMSSLQYNFDGMS 1137
BLAST of HG10009574 vs. NCBI nr
Match:
XP_031741021.1 (probable RNA-dependent RNA polymerase 1 [Cucumis sativus])
HSP 1 Score: 1980.7 bits (5130), Expect = 0.0e+00
Identity = 976/1118 (87.30%), Postives = 1031/1118 (92.22%), Query Frame = 0
Query: 13 MGKTIEIYGFRLEVTVDEVKEFLENHTGDGTVSTVRISKPKDEKARFTFATVRFGSKLAA 72
MGKTIEIYGFR +VT DEVKEFLENHTGDGTVSTVRISKPKDEKARFT TV F SKLAA
Sbjct: 1 MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60
Query: 73 EYIVAKATAAEKQLWFGSSYLKAREVERAVVA-PVRGGGEMERMEDVKGHLGSLISKEKM 132
EYIVAK+T E++LWF SSYLKARE+E+AVVA +G EMERMEDVKGHLGS+IS KM
Sbjct: 61 EYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLEMERMEDVKGHLGSMISNGKM 120
Query: 133 RVIWEGENWNVEFGIGVRKLCFYLSYEVDDYKMELSFENILSVELRCPLNQPSKFFLIQL 192
RVIWEGE W+VEFG G RKL FYLSYEVD+YKMEL FENILSVE RCPLN+PSKFFLIQL
Sbjct: 121 RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL 180
Query: 193 QGAPRIFKKTLSSSSSRCYSKESTGFHWIRDVDFTPSSCIGQSFALCLELSPEHHLPTFF 252
QGAPRIF+KT SSSSS YS +ST F WIRDVDFTPSSCIGQSF +CL+LSP HHLP FF
Sbjct: 181 QGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF 240
Query: 253 QTLVGYKETYAPFILQTGSSFSSISNLVPIITPPQAFDISYKILFKINALVQHGYLPGPT 312
QTLVGYK TYAPFIL GSS S SNLVPIITPPQAFDISYKILFKINAL+QHGYL GPT
Sbjct: 241 QTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT 300
Query: 313 LDDEFFRLVDPSRFRPDFIEHALEKLFNMKECCYEPQKWLKHQYLSFYTSNQLPWKHNIS 372
LDDEFFRLVD SRF D+I+HALEKLFN+KECCY+PQKWLK QYLS+YTSNQLPWK NIS
Sbjct: 301 LDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNIS 360
Query: 373 LDDGLVYVHRVQITPSKVYFRGPEANLSNRVVRRFIDDIDNFIRVSFVDEELDKLHSIDL 432
LDDGLVYVHRVQITP KVYF GPEANLSNRVVRRFI DIDNF+RVSFVDEELDKLHSIDL
Sbjct: 361 LDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDL 420
Query: 433 SPRSSSAESSARTRVYDRVLSVLRNGILIGDKKFEFLAFSASQLRENSFWMFASREGLSA 492
+PRSSS E+S RTRVYDRV+SVL+NGI+IG+KKFEFLAFSASQLRENSFWMFASREGLSA
Sbjct: 421 APRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSA 480
Query: 493 ADIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKKIMYCFSD 552
ADIREWMGDF IRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERK I+YCFSD
Sbjct: 481 ADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIIYCFSD 540
Query: 553 GIGKISKTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRKSMLKYMSL 612
GIGKISKTLA+KVAEKCGLI+HTPSAFQIRYAGYKGVVAIDPTSKKKLSLR SMLKYMSL
Sbjct: 541 GIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNSMLKYMSL 600
Query: 613 DTQLDVLLWSKYQPCFLNRQVINLLSTLGIKDRVFEKKQKEAIEQLDSILDDPSRALEVL 672
DTQLDVL WSKYQPCFLNRQVINLLSTLGI D VF KKQKEAI+QLDSIL+DPSRALEVL
Sbjct: 601 DTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVL 660
Query: 673 ELMSPGEMTSILKELLLFYKPNEEPFLNMMLRTLRADKLLDLRTKSRIFVPKGRTMMGCL 732
ELMSPGEMTSILKELL FY PNEEPFLNMMLRT RA+KLLDL+TKSRIFVP+GRTM+GCL
Sbjct: 661 ELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTMIGCL 720
Query: 733 DETRTLEYGQVFVHCSVPGRSSESNFIVKGKVVVAKNPCLHPGDVRVLDAVDVKALHHMV 792
DETRTLEYGQVFVHCSVP RSSE NF+VKGK+VVAKNPCLHPGDVRVLDAVDVKALHHMV
Sbjct: 721 DETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVDVKALHHMV 780
Query: 793 DCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIKPVKPMSYEPAPTMQLDHDVTI 852
DCVVFPQKGKRPHPNECSGSDLDGDLYF CWD ELTCIK VKPM+YEPAPT+QL+HDVTI
Sbjct: 781 DCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIKQVKPMNYEPAPTIQLNHDVTI 840
Query: 853 EEVQEYLANYMVNDGLGAIANAHTVFADKKPKKAMSAECIKLAKLFSIAVDFPKTGVPAN 912
EE+QEY ANYMVNDG+GAIANAHTVFADK KKAMS ECIKLAKLFSIAVDFPKTGVPAN
Sbjct: 841 EEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKLFSIAVDFPKTGVPAN 900
Query: 913 LPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTLEIFTREVATKCYDPD 972
LPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNT EIFTREVATK YDPD
Sbjct: 901 LPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTREVATKYYDPD 960
Query: 973 MEVDGFAKYLREAFDYKTRYDFKLGNLMDYYGIKTEPELVSGNILRMAKSFDKRNDLEQI 1032
MEVDGF KYLREAFDYKT+YDFKLGNLMDYYGIKTEPELVSGN+L+MAKSFDKRNDLEQI
Sbjct: 961 MEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVLKMAKSFDKRNDLEQI 1020
Query: 1033 VFAMKSLRKEARAWFNEKGNKFTYNDNKDEGQEYAKASAWYHVTYHPDYWGRYNEGMQRD 1092
FAMKSLRKE R+WFNE +KFTY+D +D EYAKASAWY+VTYHPDYWG YNEGMQRD
Sbjct: 1021 TFAMKSLRKEVRSWFNENESKFTYDDIED---EYAKASAWYYVTYHPDYWGCYNEGMQRD 1080
Query: 1093 HFLSFPWCVADKLIQIKREKTSLMNFSPMSSLIHKFGG 1130
HFLSFPWCVADKLIQIKR+K +L N P+SSL H F G
Sbjct: 1081 HFLSFPWCVADKLIQIKRDKMTLKNSYPVSSLFHNFDG 1115
BLAST of HG10009574 vs. ExPASy Swiss-Prot
Match:
Q9LQV2 (RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1)
HSP 1 Score: 1252.3 bits (3239), Expect = 0.0e+00
Identity = 644/1105 (58.28%), Postives = 807/1105 (73.03%), Query Frame = 0
Query: 13 MGKTIEIYGFRLEVTVDEVKEFLENHTGDGTVSTVRISKPKDEKARFTFATVRFGSKLAA 72
MGKTI+++GF V+ +EVK+FLE TG GTV +++ +PK R +A V+F S+
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPR-VYAIVQFTSERHT 60
Query: 73 EYIVAKATAAEKQLWFGSSYLKAREVERAVVAPVRGGGEMERMEDVKGHLGSLISKEKMR 132
I+ TAA ++L++G SYLKA EVE+ +V R + + +K G +S +K
Sbjct: 61 RLII---TAAAERLYYGRSYLKAFEVEQDIVPKPR--ASLHTISGLKMFFGCQVSTKKFL 120
Query: 133 VIWEGENWNVEFGIGVRKLCFYLSYEVDDYKMELSFENILSVELRCPLNQPSKFFLIQLQ 192
+W ++ V FGIG+RKL F S+ DY++ELS+ENI ++L P + SKF +IQ+
Sbjct: 121 TLWSAQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVI 180
Query: 193 GAPRIFKK-----TLSSSSSRCYSKESTGFHWIRDVDFTPSSCIGQSFALCLELSPEHHL 252
GAP+IF+K L YS + + WIR DFT SSCIGQS A CLEL ++
Sbjct: 181 GAPKIFEKEDQPINLLFGIMDFYS-DGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNV 240
Query: 253 PTFFQTLVGYKETYA-PFILQTGSSFSSISN-LVPIITPPQAFDISYKILFKINALVQHG 312
P F + Y E A F++++GSS+SS +N LVP++ PP F + ++ILFK+N LVQ+
Sbjct: 241 PDFRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNA 300
Query: 313 YLPGPTLDDEFFRLVDPSRFRPDFIEHALEKLFNMKECCYEPQKWLKHQYLSFYTSNQLP 372
L GP LD +F+RL++ ++ I+H LEKLF++ ECCYEP WL+ +Y + + +LP
Sbjct: 301 CLSGPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLP 360
Query: 373 WKHNISLDDGLVYVHRVQITPSKVYFRGPEANLSNRVVRRFIDDIDNFIRVSFVDEELDK 432
ISLDDGLVY++RVQ+TP++VYF GPE N+SNRV+R + I+NF+RVSFVDE+L+K
Sbjct: 361 LSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEK 420
Query: 433 LHSIDLSPRSSSAESSARTRVYDRVLSVLRNGILIGDKKFEFLAFSASQLRENSFWMFAS 492
+ S+DLSPRSS + RT++YDR+ SVLR+GI+IGDKKFEFLAFS+SQLRENS WMFA
Sbjct: 421 VRSMDLSPRSS---TQRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAP 480
Query: 493 REGLSAADIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKKI 552
+ ++AA IR WMGDF IRNVAKYAARLGQSF SSR+TL V EIEVIPDVE+
Sbjct: 481 IDRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGT 540
Query: 553 MYCFSDGIGKISKTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRKSM 612
Y FSDGIGKIS A KVA KCGL +PSAFQIRY GYKGVVA+DP S KKLSLRKSM
Sbjct: 541 RYVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSM 600
Query: 613 LKYMSLDTQLDVLLWSKYQPCFLNRQVINLLSTLGIKDRVFEKKQKEAIEQLDSILDDPS 672
K+ S +T+LDVL WSKYQPC++NRQ+I LLSTLG+ D VFEKKQ+E +++LD+IL P
Sbjct: 601 SKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPL 660
Query: 673 RALEVLELMSPGEMTSILKELLLF-YKPNEEPFLNMMLRTLRADKLLDLRTKSRIFVPKG 732
A E L LM+PGE T+ILK L+L YKP+ EPFL+MML+ RA KLL+LRTK+RIF+ G
Sbjct: 661 EAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGG 720
Query: 733 RTMMGCLDETRTLEYGQVFVHCSVPGRSSESNFIVKGKVVVAKNPCLHPGDVRVLDAVDV 792
R+MMGCLDETRTLEYGQV V S P R FI+ G VVVAKNPCLHPGDVRVL AV+V
Sbjct: 721 RSMMGCLDETRTLEYGQVVVQYSDPMRPGR-RFIITGPVVVAKNPCLHPGDVRVLQAVNV 780
Query: 793 KALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIKPVKPMSYEPAPTMQ 852
AL+HMVDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD EL + +PM Y P PT
Sbjct: 781 PALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMDYTPEPTQI 840
Query: 853 LDHDVTIEEVQEYLANYMVNDGLGAIANAHTVFADKKPKKAMSAECIKLAKLFSIAVDFP 912
LDHDVTIEEV+EY ANY+VND LG IANAHT FADK+P KA S CI+LAK FS AVDFP
Sbjct: 841 LDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAKKFSTAVDFP 900
Query: 913 KTGVPANLPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTLEIFTREVA 972
KTGV A +P++L V EYPDFM+KP+KPTY S V+GKLFR VK+ + + +++ FT +VA
Sbjct: 901 KTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTLDVA 960
Query: 973 TKCYDPDMEVDGFAKYLREAFDYKTRYDFKLGNLMDYYGIKTEPELVSGNILRMAKSFDK 1032
+K YD DMEVDGF +Y+ EAF K YDFKLGNLMDYYGIKTE E++SG I+RM+KSF K
Sbjct: 961 SKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFTK 1020
Query: 1033 RNDLEQIVFAMKSLRKEARAWFNEKGNKFTYNDNKDEGQEYAKASAWYHVTYHPDYWGRY 1092
R D E I A+++LRKE + FN +++E E AKASAWYHVTYH YWG Y
Sbjct: 1021 RRDAESIGRAVRALRKETLSLFNA---------SEEEENESAKASAWYHVTYHSSYWGLY 1080
Query: 1093 NEGMQRDHFLSFPWCVADKLIQIKR 1110
NEG+ RDHFLSF WCV DKL++IK+
Sbjct: 1081 NEGLNRDHFLSFAWCVYDKLVRIKK 1085
BLAST of HG10009574 vs. ExPASy Swiss-Prot
Match:
Q0DXS3 (Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR1 PE=2 SV=2)
HSP 1 Score: 916.4 bits (2367), Expect = 3.2e-265
Identity = 457/741 (61.67%), Postives = 568/741 (76.65%), Query Frame = 0
Query: 387 SKVYFRGPEANLSNRVVRRFIDDIDNFIRVSFVDEELDKLHSIDLSPRSSSAESSARTRV 446
S VYF GPE N+SNRVVR F DI+NF+R+SFVDE+ +KL + DLSPRS+S + RT +
Sbjct: 7 STVYFYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRATDLSPRSASGHDANRTAL 66
Query: 447 YDRVLSVLRNGILIGDKKFEFLAFSASQLRENSFWMFASREGLSAADIREWMGDFRQIRN 506
Y RVLSVL +GI IG K FEFLAFS+SQLR+NS WMFASR+GL+A+DIR WMGDFR IRN
Sbjct: 67 YKRVLSVLSDGITIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMGDFRNIRN 126
Query: 507 VAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKKIMYCFSDGIGKISKTLAEKVAE 566
VAKYAARLGQSF SS +TL V+++E+E I D+ + + FSDGIGKIS A +VA
Sbjct: 127 VAKYAARLGQSFSSSTETLKVQKYEVEEISDI---KNGTQHVFSDGIGKISSAFANEVAM 186
Query: 567 KCGLISHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRKSMLKYMSLDTQLDVLLWSKYQPC 626
KC L PSAFQIRY GYKGVVA+DPTS+ KLSLRKSMLK+ S + +DVL +SKYQP
Sbjct: 187 KCNLKRFAPSAFQIRYGGYKGVVAVDPTSRWKLSLRKSMLKFQSDNITVDVLAYSKYQPG 246
Query: 627 FLNRQVINLLSTLGIKDRVFEKKQKEAIEQLDSILDDPSRALEVLELMSPGEMTSILKEL 686
FLNRQ+I LLSTLG++D VFE+KQ+EA+ QL+ ++ DP A+E +ELM GE+T+ +KEL
Sbjct: 247 FLNRQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMGEITNAVKEL 306
Query: 687 LLF-YKPNEEPFLNMMLRTLRADKLLDLRTKSRIFVPKGRTMMGCLDETRTLEYGQVFVH 746
LL Y+P++EP+L+M+L+T RA KLL+L+TKSRI +PKGR MMGCLDETRTL+YGQVF+
Sbjct: 307 LLCGYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDETRTLKYGQVFIR 366
Query: 747 CSVPGRSSESNFIVKGKVVVAKNPCLHPGDVRVLDAVDVKALHHMVDCVVFPQKGKRPHP 806
+ G + F V GKVV+AKNPCLHPGD+R+L AVDV LHHM +CVVFPQ+G RPHP
Sbjct: 367 -ATSGVNDNDRFTVTGKVVIAKNPCLHPGDIRILHAVDVPVLHHMFNCVVFPQQGPRPHP 426
Query: 807 NECSGSDLDGDLYFVCWDPELTCIKPVKPMSYEPAPTMQLDHDVTIEEVQEYLANYMVND 866
NECSGSDLDGD+YFV WDP L + V PM Y PAPT LDHDVTIEEV+EY NY+VN+
Sbjct: 427 NECSGSDLDGDIYFVSWDPSLIPPRMVTPMDYTPAPTETLDHDVTIEEVEEYFTNYIVNE 486
Query: 867 GLGAIANAHTVFADKKPKKAMSAECIKLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFM 926
LG IANAH VFADK+ KA S+ CI+LAKLFSIAVDFPKTGVPA +P L V EYPDFM
Sbjct: 487 SLGMIANAHVVFADKEDLKAESSPCIELAKLFSIAVDFPKTGVPALIPPELHVKEYPDFM 546
Query: 927 DKPNKPTYVSNGVLGKLFRGVKDVSSDVNTLEIFTREVATKCYDPDMEVDGFAKYLREAF 986
+K +K TY S GV+GKL+R +K + + + FTREVA + YD DM VDG+ Y+ EA
Sbjct: 547 EKLDKVTYESKGVIGKLYREIKKHTPHI---KHFTREVARRSYDTDMIVDGYEDYITEAM 606
Query: 987 DYKTRYDFKLGNLMDYYGIKTEPELVSGNILRMAKSFDKRNDLEQIVFAMKSLRKEARAW 1046
K YDFKLGNLMD+YGIK+E E++SG IL+MAK+F K++D + I A++SLRKEAR+
Sbjct: 607 ALKDEYDFKLGNLMDHYGIKSEAEIISGCILKMAKNFTKKSDADAIRLAVRSLRKEARSR 666
Query: 1047 FNEKGNKFTYNDN-KDEGQEYAKASAWYHVTYHPDYWGRYNEGMQRDHFLSFPWCVADKL 1106
F+E + +DN AKASAWYHVTYHP++WG YNEG +R HF+SFPWC+ +KL
Sbjct: 667 FSE----MSLDDNGHGHDASEAKASAWYHVTYHPEFWGCYNEGYERPHFISFPWCIYEKL 726
Query: 1107 IQIKREKTSLMNFSPMSSLIH 1126
++IK+ + + P +H
Sbjct: 727 LRIKQRRKFVRKMQPELFSLH 736
BLAST of HG10009574 vs. ExPASy Swiss-Prot
Match:
O82504 (RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana OX=3702 GN=RDR2 PE=1 SV=1)
HSP 1 Score: 747.7 bits (1929), Expect = 2.0e-214
Identity = 448/1149 (38.99%), Postives = 650/1149 (56.57%), Query Frame = 0
Query: 16 TIEIYGFRLEVTVDEVKEFLENHTGDGTVSTVRISKPKDEKARFTFATVRFGSKLAAEYI 75
T++I + DE+ FLE H G+ TV + I +D FA V+F +
Sbjct: 11 TVKISNVPQTIVADELLRFLELHLGEDTVFALEIPTTRDNWKPRDFARVQFTTLEVKSR- 70
Query: 76 VAKATAAEKQLWFGSSYLKAREVERAVVAPVRGGGEMERMEDVKGHLGSLISKEKMRVI- 135
A+ +++ +L F + L+ E ++ R +R++D+ +G S EK
Sbjct: 71 -AQLLSSQSKLLFKTHNLRLSEAYDDIIP--RPVDPRKRLDDIVLTVGFPESDEKRFCAL 130
Query: 136 --WEGEN-WNVEFGIGVRKLCFYLSYEVDDYKMELSFENILSVELRCPLNQPSKF--FLI 195
W+G W + R++ F++ D YK+E+ FE+I+ C S+ FL+
Sbjct: 131 EKWDGVRCWIL---TEKRRVEFWVWESGDCYKIEVRFEDIIETLSCCVNGDASEIDAFLL 190
Query: 196 QLQGAPRIFKK------TLSSSSSRCYSKESTGFHWIRDVDFTPSSCIGQSFALCLELSP 255
+L+ P++FK+ T S + KE F WIR DF+ S IG S CLE+
Sbjct: 191 KLKYGPKVFKRVTVHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCLEVHN 250
Query: 256 EHHLPTFFQTLVGYKETYAPFILQTGSSFSSISNLVPIITPP-QAFDISYKILFKINALV 315
+ F L Y+E G +F+S + +VP++ + Y+ILF++NALV
Sbjct: 251 GSTMLDIFSGLPYYREDTLSLTYVDGKTFASAAQIVPLLNAAILGLEFPYEILFQLNALV 310
Query: 316 QHGYLP-GPTLDDEFFRLVDPSRFRPDFIEHALEKLFNMKECCYEPQKWLKHQYLSFYTS 375
+ D E +++ + L+KL CY+P ++K Q S
Sbjct: 311 HAQKISLFAASDMELIKILRGMSLETALV--ILKKLHQQSSICYDPVFFVKTQMQSVVKK 370
Query: 376 NQLPWKHNIS------LDDGLVYVHRVQITPSKVYFRGPEANLSNRVVRRFIDDIDNFIR 435
KH+ + + ++ R +TPSK+Y GPE +N VV+ F + + +F+R
Sbjct: 371 ----MKHSPASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMR 430
Query: 436 VSFVDEELDKLHSIDLSPRSSSA--ESSARTRVYDRVLSVLRNGILIGDKKFEFLAFSAS 495
V+FV+E+ KL + LS S +RT +Y+RVLS+L GI +G K+FEFLAFSAS
Sbjct: 431 VTFVEEDWSKLPANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAFSAS 490
Query: 496 QLRENSFWMFASREGLSAADIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVEEHEIE 555
QLR NS WMFAS E + A DIREWMG FR+IR+++K AAR+GQ F +SR+TL V ++E
Sbjct: 491 QLRGNSVWMFASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVE 550
Query: 556 VIPDVEVERKKIMYCFSDGIGKISKTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAIDP 615
IPD+EV YCFSDGIGKIS A++VA+KCGL SH PSAFQIRY GYKGV+A+D
Sbjct: 551 QIPDIEVTTDGADYCFSDGIGKISLAFAKQVAQKCGL-SHVPSAFQIRYGGYKGVIAVDR 610
Query: 616 TSKKKLSLRKSMLKYMSLDTQLDVLLWSKYQPCFLNRQVINLLSTLGIKDRVFEKKQKEA 675
+S +KLSLR SMLK+ S + L+V W++ PCFLNR++I LLSTLGI+D +FE Q
Sbjct: 611 SSFRKLSLRDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVH 670
Query: 676 IEQLDSILDDPSRALEVLELMSPGEMTSIL-KELLLFYKPNEEPFLNMMLRTLRADKLLD 735
+ L ++L+D AL VL+ +S ++L K LL Y P+ EP+L+MMLR +L +
Sbjct: 671 LSMLGNMLEDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSE 730
Query: 736 LRTKSRIFVPKGRTMMGCLDETRTLEYGQVFVHCSVP------------GRSSESNFIVK 795
L+++ RI VPKGR ++GC+DE LEYGQV+V ++ + E +V
Sbjct: 731 LKSRCRILVPKGRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEETSVVI 790
Query: 796 GKVVVAKNPCLHPGDVRVLDAVDVKALHH--MVDCVVFPQKGKRPHPNECSGSDLDGDLY 855
GKVVV KNPCLHPGD+RVLDA+ +DC++FPQKG+RPHPNECSG DLDGD +
Sbjct: 791 GKVVVTKNPCLHPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLDGDQF 850
Query: 856 FVCWDPELTCIKPVKPMSYEPAPTMQLDHDVTIEEVQEYLANYMVNDGLGAIANAHTVFA 915
FV WD ++ + PM Y + +DHDVT+EE+ ++ +YM++D LG I+ AH V A
Sbjct: 851 FVSWDEKIIPSEMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVHA 910
Query: 916 DKKPKKAMSAECIKLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPNKPTYVSNGV 975
D+ P+KA S +C++LA L S AVDF KTG PA +P L+ E+PDF+++ KPTY+S V
Sbjct: 911 DRDPEKARSQKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYISESV 970
Query: 976 LGKLFRGVKDVSSDVNTLEIFTREVATKCYDPDMEVDGFAKYLREAFDYKTRYDFKLGNL 1035
GKL+R VK S + + T YD +E GF ++ A ++ Y KL +L
Sbjct: 971 FGKLYRAVK---SSLAQRKPEAESEDTVAYDVTLEEAGFESFIETAKAHRDMYGEKLTSL 1030
Query: 1036 MDYYGIKTEPELVSGNI----LRMAKSFDKRNDL-EQIVFAMKSLRKEARAWFNEKGNKF 1095
M YYG E E+++G + + +A+ + D+ ++I ++K L KEA WF +
Sbjct: 1031 MIYYGAANEEEILTGILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWFEK----- 1090
Query: 1096 TYNDNKDEGQEYAKASAWYHVTYHPDYWGRYNEGMQRDHFLSFPWCVADKLIQIKREKTS 1123
+DE Q+ ASAWY+VTY+P N ++ FLSFPW V D L+ IK E
Sbjct: 1091 ---SCEDEQQKKKLASAWYYVTYNP------NHRDEKLTFLSFPWIVGDVLLDIKAENAQ 1128
BLAST of HG10009574 vs. ExPASy Swiss-Prot
Match:
Q7XM31 (Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=RDR2 PE=2 SV=1)
HSP 1 Score: 726.5 bits (1874), Expect = 4.7e-208
Identity = 415/1013 (40.97%), Postives = 594/1013 (58.64%), Query Frame = 0
Query: 135 WEGENWNVEFGIGVRKLCFYLSYEVDDYKMELSFENILSVELRCPLNQPSKFFLIQLQGA 194
W+G E G R++ YL ++ YK+E+ FE++ L C L+ L+QL A
Sbjct: 130 WDGV--RAEVIPGKRRVDLYLEHDSQRYKLEVLFEDMKDC-LGCTLDGMGA-ILLQLNYA 189
Query: 195 PRIFKKTLSSSSSRCY-------SKESTGFHWIRDVDFTPSSCIGQSFALCLELSPEHHL 254
PRI + + + KE F W+R +DFTP+ G+ L L+L +
Sbjct: 190 PRIHTAISGPAVNSRFMDDRFHACKEDAKFSWVRALDFTPNYSFGRCSTLVLKLGKSALV 249
Query: 255 PTFFQTLVGYKETYAPFILQTGSSFSSISNLVPIITPPQAFDISYKILFKINALVQHGYL 314
++L + + + + SN+VP++ P+ + + Y++LF++N+L+ G +
Sbjct: 250 SDILKSL-PFSGNLGELTMNSMDGVGASSNVVPLVHCPRDYSVPYEVLFRLNSLMHMGKI 309
Query: 315 PGPTLDDEFFRLVDPSRFRPDFIEHALEKLFNMKECCYEPQKWLKHQYLSFYTSNQLPWK 374
++ + F+ + D EK+ ++ CY P ++++ + S S
Sbjct: 310 VAKHVNADLFKAL--QELPVDVSRRIFEKMHKLESTCYGPLQFIQQEAYSMKRS------ 369
Query: 375 HNISLDD--------GLVYVHRVQITPSKVYFRGPEANLSNRVVRRFIDDIDNFIRVSFV 434
HN+ L + L+ +RV ITPSK++ GPE ++N VV+ +F+RV+FV
Sbjct: 370 HNVLLSNEGEGEGERKLMKCYRVNITPSKIFCFGPEEEVTNYVVKHHSAYASDFVRVTFV 429
Query: 435 DEELDKLHSIDLSPRSSSAESSA--RTRVYDRVLSVLRNGILIGDKKFEFLAFSASQLRE 494
DE+ KL S +S R S +T +Y R+LS+L+ G IG K FEFLAFSASQLR
Sbjct: 430 DEDWSKLSSNAISARIEQGFFSKPFKTGLYYRILSILKKGFSIGPKNFEFLAFSASQLRG 489
Query: 495 NSFWMFASREGLSAADIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPD 554
NS WMFAS L+A IR WMG F IR+V+K AAR+GQ F SSR+T V ++EVIPD
Sbjct: 490 NSVWMFASNASLNAGGIRRWMGHFENIRSVSKCAARMGQLFSSSRQTFEVLRWDVEVIPD 549
Query: 555 VEVERKKIMYCFSDGIGKISKTLAEKVAEKCGL-ISHTPSAFQIRYAGYKGVVAIDPTSK 614
+E+ Y FSDGIGKIS A++VA GL ++ PSAFQIRY GYKGV+AIDP S
Sbjct: 550 IEITTDGSKYIFSDGIGKISLRFAKRVAHHVGLDPTNLPSAFQIRYGGYKGVIAIDPMSS 609
Query: 615 KKLSLRKSMLKYMSLDTQLDVLLWSKYQPCFLNRQVINLLSTLGIKDRVFEKKQKEAIEQ 674
LSLR SM K+ S L++ WSK QPC++NR++I+LLSTLGI+D +F Q++ + +
Sbjct: 610 IDLSLRPSMKKFESESRMLNITSWSKSQPCYVNREIISLLSTLGIRDEIFVAMQQDEMRE 669
Query: 675 LDSILDDPSRALEVLELMSPGEMTSILKELLLFYKPNEEPFLNMMLRTLRADKLLDLRTK 734
+ +L + AL VL + E + +K LL Y+P+ EP+L+M+L+ + ++L D+RT+
Sbjct: 670 TEEMLTNKEVALSVLGKLGGSETKTAVKMLLQGYEPSSEPYLSMILKAHQENRLTDIRTR 729
Query: 735 SRIFVPKGRTMMGCLDETRTLEYGQVFVHCSVPGR----SSESNF--------IVKGKVV 794
+I VPKGR ++GCLDET LEYGQV++ + + S++S F V GKV
Sbjct: 730 CKIHVPKGRVLIGCLDETGVLEYGQVYIRITKNSKEQKDSNQSYFYNDDGKTATVVGKVA 789
Query: 795 VAKNPCLHPGDVRVLDAVDVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDP 854
+ KNPCLHPGD+RVL+A+ L MVDC+VFPQ+G+RPHPNECSG DLDGDLYF+ WD
Sbjct: 790 ITKNPCLHPGDIRVLEAIYDPDLVGMVDCLVFPQRGERPHPNECSGGDLDGDLYFITWDD 849
Query: 855 ELTCIKPVKPMSYEPAPTMQLDHDVTIEEVQEYLANYMVNDGLGAIANAHTVFADKKPKK 914
+L K PM Y +DH VT+EE+Q++ +YM+ND LGAI+ AH + AD+ P K
Sbjct: 850 KLIPEKVDTPMDYTATRPRIMDHVVTLEEIQKHFVDYMINDSLGAISTAHLIHADRSPLK 909
Query: 915 AMSAECIKLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFR 974
A S EC++LA L S+AVDF KTG PA +PR LR EYPDFM++ KP Y+SNGVLGKL+R
Sbjct: 910 ARSPECLQLATLHSMAVDFAKTGAPAEMPRTLRPREYPDFMERWEKPMYISNGVLGKLYR 969
Query: 975 ---GVKDVSSDVNTLEIFTREVATKCYDPDMEVDGFAKYLREAFDYKTRYDFKLGNLMDY 1034
G + S D L + + + YDPD+EV G ++L+ A +Y Y+ KL LM+Y
Sbjct: 970 SAMGHMEKSGDSGALSSSSAQ-PSPTYDPDLEVPGSDEFLQAAEEYYELYEEKLTTLMNY 1029
Query: 1035 YGIKTEPELVSGNILRMAKSFDKRND------LEQIVFAMKSLRKEARAWFNEKGNKFTY 1094
Y + E E+++GNI R + KR++ ++IV A+ +L +EAR W
Sbjct: 1030 YRAELEDEILTGNI-RNKMLYLKRDNKRYFEMKDRIVAAVDALHREARGWL--------- 1089
Query: 1095 NDNKDEGQEYAKASAWYHVTYHPDYWGRYNEGMQRDHFLSFPWCVADKLIQIK 1109
++ E ASAWY VTYHPD + F SFPW D L+ IK
Sbjct: 1090 LSSRKEEDASRMASAWYRVTYHPD-------RRRGKRFWSFPWIACDNLLAIK 1111
BLAST of HG10009574 vs. ExPASy Swiss-Prot
Match:
Q9SG02 (RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana OX=3702 GN=RDR6 PE=1 SV=1)
HSP 1 Score: 587.4 bits (1513), Expect = 3.4e-166
Identity = 397/1069 (37.14%), Postives = 573/1069 (53.60%), Query Frame = 0
Query: 122 LGSLISKEKMRVIW--EGENWNVEFGIGVRKLCFYLSYEVD------------DYKMELS 181
+G+L+S++ V W EG ++ V+ K CF S DYK+EL
Sbjct: 139 IGTLVSRDDFFVSWRAEGVDFLVDPFDNTCKFCFRKSTAFSFKDAVMHAVINCDYKLELL 198
Query: 182 FENILSVELRCPLNQPSKFFLIQLQGAPRIFKKTLSSSSSRCYSKE--STGFHWIRDVDF 241
+I +V L+ ++QL +PR++ +T + WIR DF
Sbjct: 199 VRDIQTVRQYKTLH--GFVLILQLASSPRVWYRTADDDIYDTVPGDLLDDDDPWIRTTDF 258
Query: 242 TPSSCIGQSFALCLELSPEHH------LPTFFQTLVGYKETYAPFILQTGSSFSS-ISNL 301
T IG+ + + +SP + L F V + P ++ F +S+
Sbjct: 259 TQVGAIGRCHSYRVLISPRYENKLRTALDYFRMRRVQEERVRWPPRIRNEPCFGEPVSDH 318
Query: 302 VPIITPPQAFDISYKILFKINALVQHGYLPGPTLDDEFFRLVDPSRFRPDFIEHA-LEKL 361
I + IS++I+F +N+++ G L + FF L+ R +P + A L+ L
Sbjct: 319 FFCIHHKEG--ISFEIMFLVNSVLHRGVFNQFQLTERFFDLL---RNQPKDVNIASLKHL 378
Query: 362 FNMKECCYEPQKWLKHQYLSFYTSNQLPWKHNISLDDGLVYVHRVQITPSKVYFRGPEAN 421
K ++ K LK + +L H S D + + R+ ITP++ Y PE
Sbjct: 379 CTYKRPVFDAYKRLKLVQEWIQKNPKLLGSHEQSED--ISEIRRLVITPTRAYCLPPEVE 438
Query: 422 LSNRVVRRFIDDIDNFIRVSFVDEELDKLHSIDLS-------PRSSSAESSARTRVYDRV 481
LSNRV+RR+ + F+RV+F+DE + ++S LS +S+ S +T V+ RV
Sbjct: 439 LSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKDLTSSSFSQKTYVFKRV 498
Query: 482 LSVLRNGILIGDKKFEFLAFSASQLRENSFWMFASREGLSAADIREWMGDFRQIRNVAKY 541
S+L +G + +K+ FLAFSA+QLR+ S W FA +DI+ WMG F+ +NVAK
Sbjct: 499 KSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRVSDIKTWMGKFKD-KNVAKC 558
Query: 542 AARLGQSFGSSRKTLCVEEHEIEV-IPDVEVERKKIMYCFSDGIGKISKTLAEKVAEKCG 601
AAR+G F S+ T+ V HE++ +PD+E + Y FSDGIG I+ LA++V EK
Sbjct: 559 AARMGLCFSSTYATVDVMPHEVDTEVPDIE----RNGYVFSDGIGTITPDLADEVMEKLK 618
Query: 602 L-ISHTPSAFQIRYAGYKGVVAIDPTSKK--KLSLRKSMLKYMSLDTQLDVLLWSKYQPC 661
L + ++P A+QIRYAG+KGVVA P+ +L+LR SM K+ S T L++ W+++QP
Sbjct: 619 LDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKKFFSKHTILEICSWTRFQPG 678
Query: 662 FLNRQVINLLSTLGIKDRVFEKKQKEAIEQLDSILDDPSRALEVLELMSPGEMTSILKEL 721
FLNRQ+I LLS LG+ D +F Q+ + +L+ ILDD A EVL + + L
Sbjct: 679 FLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVAFEVLTASCAEQGNTAAIML 738
Query: 722 LLFYKPNEEPFLNMMLRTLRADKLLDLRTKSRIFVPKGRTMMGCLDETRTLEYGQVFVHC 781
+KP EP L ML ++R +L LR KSRIFV GR +MGCLDE LE+GQ F+
Sbjct: 739 SAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGCLDEAGILEHGQCFIQV 798
Query: 782 SVP----------GRSSESNF---IVKGKVVVAKNPCLHPGDVRVLDAVDVKALHHMVDC 841
S P R E+ +VKG V +AKNPCLHPGDVR+L+AVDV LHHM DC
Sbjct: 799 SKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLHPGDVRILEAVDVPQLHHMYDC 858
Query: 842 VVFPQKGKRPHPNECSGSDLDGDLYFVCWDPEL--TCIKPVKPMSYEPAPTMQLDHDVTI 901
++FPQKG RPH NE SGSDLDGDLYFV WD +L K M Y+ A L V
Sbjct: 859 LIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRKSYPAMHYDAAEEKSLGRAVNH 918
Query: 902 EEVQEYLANYMVNDGLGAIANAHTVFADKKPKKAMSAECIKLAKLFSIAVDFPKTGVPAN 961
+++ ++ A + N+ LG I NAH V AD+ AM EC+ LA+L + AVDFPKTG +
Sbjct: 919 QDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEECLLLAELAATAVDFPKTGKIVS 978
Query: 962 LPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDV-SSDVNTLEIFTREVATKCYDP 1021
+P +L+ YPDFM K + TY SN +LG+L+R VK+V D + + + YD
Sbjct: 979 MPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKEVYDEDAEASSEESTDPSAIPYDA 1038
Query: 1022 DMEVDGFAKYLREAFDYKTRYDFKLGNLMDYYGIKTEPELVSGNILRMAKSFDKRND--L 1081
+E+ GF + EA+ +K YD +L L+ Y ++ E E+V+G+I M K K+
Sbjct: 1039 VLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKEEEIVTGHIWSMPKYTSKKQGELK 1098
Query: 1082 EQIVFAMKSLRKEARAWFNEKGNKFTYNDNKDEGQE------YAKASAWYHVTYHPDYWG 1124
E++ + SL+KE R F E T D+++ +E KASAWYHVTYHP++
Sbjct: 1099 ERLKHSYNSLKKEFRKVFEE-----TIPDHENLSEEEKNILYEKKASAWYHVTYHPEWVK 1158
BLAST of HG10009574 vs. ExPASy TrEMBL
Match:
A0A0S1YCZ4 (RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=RDR1c PE=2 SV=1)
HSP 1 Score: 1982.6 bits (5135), Expect = 0.0e+00
Identity = 978/1114 (87.79%), Postives = 1029/1114 (92.37%), Query Frame = 0
Query: 13 MGKTIEIYGFRLEVTVDEVKEFLENHTGDGTVSTVRISKPKDEKARFTFATVRFGSKLAA 72
MGKTIEIYGFR +VT DEVKEFLENHTGDGTVSTVRISKPKDEKARFT TV F SKLAA
Sbjct: 1 MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60
Query: 73 EYIVAKATAAEKQLWFGSSYLKAREVERAVVA-PVRGGGEMERMEDVKGHLGSLISKEKM 132
EYIVAK+T E++LWF SSYLKARE+E+AVVA +G EMERMEDVKGHLGS+IS KM
Sbjct: 61 EYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLEMERMEDVKGHLGSMISNGKM 120
Query: 133 RVIWEGENWNVEFGIGVRKLCFYLSYEVDDYKMELSFENILSVELRCPLNQPSKFFLIQL 192
RVIWEGE W+VEFG G RKL FYLSYEVD+YKMEL FENILSVE RCPLN+PSKFFLIQL
Sbjct: 121 RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL 180
Query: 193 QGAPRIFKKTLSSSSSRCYSKESTGFHWIRDVDFTPSSCIGQSFALCLELSPEHHLPTFF 252
QGAPRIF+KT SSSSS YS +ST F WIRDVDFTPSSCIGQSF +CL+LSP HHLP FF
Sbjct: 181 QGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF 240
Query: 253 QTLVGYKETYAPFILQTGSSFSSISNLVPIITPPQAFDISYKILFKINALVQHGYLPGPT 312
QTLVGYK TYAPFIL GSS S SNLVPIITPPQAFDISYKILFKINAL+QHGYL GPT
Sbjct: 241 QTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT 300
Query: 313 LDDEFFRLVDPSRFRPDFIEHALEKLFNMKECCYEPQKWLKHQYLSFYTSNQLPWKHNIS 372
LDDEFFRLVD SRF D+IEHALEKLFN+KECCY+PQKWLK QYLS+YTSNQLPWK NIS
Sbjct: 301 LDDEFFRLVDSSRFHSDYIEHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNIS 360
Query: 373 LDDGLVYVHRVQITPSKVYFRGPEANLSNRVVRRFIDDIDNFIRVSFVDEELDKLHSIDL 432
LDDGLVYVHRVQITP KVYF GPEANLSNRVVRRFI DIDNF+RVSFVDEELDKLHSIDL
Sbjct: 361 LDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDL 420
Query: 433 SPRSSSAESSARTRVYDRVLSVLRNGILIGDKKFEFLAFSASQLRENSFWMFASREGLSA 492
+PRSSS E+S RTRVYDRV+S+L+NGI+IG+KKFEFLAFSASQLRENSFWMFASREGLSA
Sbjct: 421 APRSSSPENSQRTRVYDRVISILKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSA 480
Query: 493 ADIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKKIMYCFSD 552
ADIREWMGDF IRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERK IMYCFSD
Sbjct: 481 ADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIMYCFSD 540
Query: 553 GIGKISKTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRKSMLKYMSL 612
GIGKISKTLA+KVAEKCGL SHTPSAFQIRYAGYKGVVAIDPTS+KKLSLRKSMLKYMSL
Sbjct: 541 GIGKISKTLAKKVAEKCGLTSHTPSAFQIRYAGYKGVVAIDPTSEKKLSLRKSMLKYMSL 600
Query: 613 DTQLDVLLWSKYQPCFLNRQVINLLSTLGIKDRVFEKKQKEAIEQLDSILDDPSRALEVL 672
DTQLDVLLWSKYQPCFLNRQVINLLSTLGI+D VF KKQKEAI+QLDSIL+DPSRALEVL
Sbjct: 601 DTQLDVLLWSKYQPCFLNRQVINLLSTLGIRDDVFVKKQKEAIDQLDSILEDPSRALEVL 660
Query: 673 ELMSPGEMTSILKELLLFYKPNEEPFLNMMLRTLRADKLLDLRTKSRIFVPKGRTMMGCL 732
ELMSPGEMTSILKELL FY PN+EPFLNMMLRT RADKLLDLRTKSRIFVPKGRTMMGCL
Sbjct: 661 ELMSPGEMTSILKELLSFYMPNQEPFLNMMLRTFRADKLLDLRTKSRIFVPKGRTMMGCL 720
Query: 733 DETRTLEYGQVFVHCSVPGRSSESNFIVKGKVVVAKNPCLHPGDVRVLDAVDVKALHHMV 792
DET+TLEYGQVFVHCS+PGRSSE NF+VKGKVVVAKNPCLHPGDVR+LDA+DVKALHHMV
Sbjct: 721 DETQTLEYGQVFVHCSIPGRSSEGNFVVKGKVVVAKNPCLHPGDVRLLDAIDVKALHHMV 780
Query: 793 DCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIKPVKPMSYEPAPTMQLDHDVTI 852
DCVVFPQKGKRPHPNECSGSDLDGDLYFVCWD ELTCIK VKPMSY+PAPT+QLDHDVTI
Sbjct: 781 DCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDTELTCIKQVKPMSYKPAPTIQLDHDVTI 840
Query: 853 EEVQEYLANYMVNDGLGAIANAHTVFADKKPKKAMSAECIKLAKLFSIAVDFPKTGVPAN 912
EEVQEY ANYMVNDGLGAIANAHTVFADK KKAMSAECIKLAKLFSIAVDFPKTGVPAN
Sbjct: 841 EEVQEYFANYMVNDGLGAIANAHTVFADKNSKKAMSAECIKLAKLFSIAVDFPKTGVPAN 900
Query: 913 LPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTLEIFTREVATKCYDPD 972
LPRNLRVHEYPDFMDKPNK TYVSNGVLGKLFRGVKDVSSDV+ EIFTREVATKCYDPD
Sbjct: 901 LPRNLRVHEYPDFMDKPNKATYVSNGVLGKLFRGVKDVSSDVSAFEIFTREVATKCYDPD 960
Query: 973 MEVDGFAKYLREAFDYKTRYDFKLGNLMDYYGIKTEPELVSGNILRMAKSFDKRNDLEQI 1032
MEVDGF KYLREAFDYKT+YDFKLGNLMDYYGIKTEPELVSGNIL+MAKSFDKR DLEQI
Sbjct: 961 MEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNILKMAKSFDKRKDLEQI 1020
Query: 1033 VFAMKSLRKEARAWFNEKGNKFTYNDNKDEGQEYAKASAWYHVTYHPDYWGRYNEGMQRD 1092
FAMKSLRKE R WFNE +K TY+D +D EYA+ASAWY VTYHPDYWG YNEG +RD
Sbjct: 1021 AFAMKSLRKEVRFWFNENESKSTYDDIQD---EYARASAWYCVTYHPDYWGCYNEGTKRD 1080
Query: 1093 HFLSFPWCVADKLIQIKREKTSLMNFSPMSSLIH 1126
HFLSFPWCVADKLIQIKREK S+ N SP SSL+H
Sbjct: 1081 HFLSFPWCVADKLIQIKREKMSMRNSSPKSSLLH 1111
BLAST of HG10009574 vs. ExPASy TrEMBL
Match:
A0A0A0KRH3 (RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_5G564290 PE=3 SV=1)
HSP 1 Score: 1982.2 bits (5134), Expect = 0.0e+00
Identity = 977/1118 (87.39%), Postives = 1031/1118 (92.22%), Query Frame = 0
Query: 13 MGKTIEIYGFRLEVTVDEVKEFLENHTGDGTVSTVRISKPKDEKARFTFATVRFGSKLAA 72
MGKTIEIYGFR +VT DEVKEFLENHTGDGTVSTVRISKPKDEKARFT TV F SKLAA
Sbjct: 1 MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60
Query: 73 EYIVAKATAAEKQLWFGSSYLKAREVERAVVA-PVRGGGEMERMEDVKGHLGSLISKEKM 132
EYIVAK+T E++LWF SSYLKARE+E+AVVA +G EMERMEDVKGHLGS+IS KM
Sbjct: 61 EYIVAKSTTEERKLWFESSYLKARELEKAVVAKETKGVLEMERMEDVKGHLGSMISNGKM 120
Query: 133 RVIWEGENWNVEFGIGVRKLCFYLSYEVDDYKMELSFENILSVELRCPLNQPSKFFLIQL 192
RVIWEGE W+VEFG G RKL FYLSYEVD+YKMEL FENILSVE RCPLN+PSKFFLIQL
Sbjct: 121 RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL 180
Query: 193 QGAPRIFKKTLSSSSSRCYSKESTGFHWIRDVDFTPSSCIGQSFALCLELSPEHHLPTFF 252
QGAPRIF+KT SSSSS YS +ST F WIRDVDFTPSSCIGQSF +CL+LSP HHLP FF
Sbjct: 181 QGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF 240
Query: 253 QTLVGYKETYAPFILQTGSSFSSISNLVPIITPPQAFDISYKILFKINALVQHGYLPGPT 312
QTLVGYK TYAPFIL GSS S SNLVPIITPPQAFDISYKILFKINAL+QHGYL GPT
Sbjct: 241 QTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT 300
Query: 313 LDDEFFRLVDPSRFRPDFIEHALEKLFNMKECCYEPQKWLKHQYLSFYTSNQLPWKHNIS 372
LDDEFFRLVD SRF D+I+HALEKLFN+KECCY+PQKWLK QYLS+YTSNQLPWK NIS
Sbjct: 301 LDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNIS 360
Query: 373 LDDGLVYVHRVQITPSKVYFRGPEANLSNRVVRRFIDDIDNFIRVSFVDEELDKLHSIDL 432
LDDGLVYVHRVQITP KVYF GPEANLSNRVVRRFI DIDNF+RVSFVDEELDKLHSIDL
Sbjct: 361 LDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDL 420
Query: 433 SPRSSSAESSARTRVYDRVLSVLRNGILIGDKKFEFLAFSASQLRENSFWMFASREGLSA 492
+PRSSS E+S RTRVYDRV+SVL+NGI+IG+KKFEFLAFSASQLRENSFWMFASREGLSA
Sbjct: 421 APRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLRENSFWMFASREGLSA 480
Query: 493 ADIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKKIMYCFSD 552
ADIREWMGDF IRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERK IMYCFSD
Sbjct: 481 ADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIMYCFSD 540
Query: 553 GIGKISKTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRKSMLKYMSL 612
GIGKISKTLA+KVAEKCGLI+HTPSAFQIRYAGYKGVVAIDPTSKKKLSLR SMLKYMSL
Sbjct: 541 GIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNSMLKYMSL 600
Query: 613 DTQLDVLLWSKYQPCFLNRQVINLLSTLGIKDRVFEKKQKEAIEQLDSILDDPSRALEVL 672
DTQLDVL WSKYQPCFLNRQVINLLSTLGI D VF KKQKEAI+QLDSIL+DPSRALEVL
Sbjct: 601 DTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVL 660
Query: 673 ELMSPGEMTSILKELLLFYKPNEEPFLNMMLRTLRADKLLDLRTKSRIFVPKGRTMMGCL 732
ELMSPGEMTSILKELL FY PNEEPFLNMMLRT RA+KLLDL+TKSRIFVP+GRTM+GCL
Sbjct: 661 ELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTMIGCL 720
Query: 733 DETRTLEYGQVFVHCSVPGRSSESNFIVKGKVVVAKNPCLHPGDVRVLDAVDVKALHHMV 792
DETRTLEYGQVFVHCSVP RSSE NF+VKGK+VVAKNPCLHPGDVRVLDAVDVKALHHMV
Sbjct: 721 DETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVDVKALHHMV 780
Query: 793 DCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIKPVKPMSYEPAPTMQLDHDVTI 852
DCVVFPQKGKRPHPNECSGSDLDGDLYF CWD ELTCIK VKPM+YEPAPT+QL+HDVTI
Sbjct: 781 DCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIKQVKPMNYEPAPTIQLNHDVTI 840
Query: 853 EEVQEYLANYMVNDGLGAIANAHTVFADKKPKKAMSAECIKLAKLFSIAVDFPKTGVPAN 912
EE+QEY ANYMVNDG+GAIANAHTVFADK KKAMS ECIKLAKLFSIAVDFPKTGVPAN
Sbjct: 841 EEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKLFSIAVDFPKTGVPAN 900
Query: 913 LPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTLEIFTREVATKCYDPD 972
LPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNT EIFTREVATK YDPD
Sbjct: 901 LPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTREVATKYYDPD 960
Query: 973 MEVDGFAKYLREAFDYKTRYDFKLGNLMDYYGIKTEPELVSGNILRMAKSFDKRNDLEQI 1032
MEVDGF KYLREAFDYKT+YDFKLGNLMDYYGIKTEPELVSGN+L+MAKSFDKRNDLEQI
Sbjct: 961 MEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVLKMAKSFDKRNDLEQI 1020
Query: 1033 VFAMKSLRKEARAWFNEKGNKFTYNDNKDEGQEYAKASAWYHVTYHPDYWGRYNEGMQRD 1092
FAMKSLRKE R+WFNE +KFTY+D +D EYAKASAWY+VTYHPDYWG YNEGMQRD
Sbjct: 1021 TFAMKSLRKEVRSWFNENESKFTYDDIED---EYAKASAWYYVTYHPDYWGCYNEGMQRD 1080
Query: 1093 HFLSFPWCVADKLIQIKREKTSLMNFSPMSSLIHKFGG 1130
HFLSFPWCVADKLIQIKR+K +L N P+SSL H F G
Sbjct: 1081 HFLSFPWCVADKLIQIKRDKMTLKNSYPVSSLFHNFDG 1115
BLAST of HG10009574 vs. ExPASy TrEMBL
Match:
E5GB63 (RNA-dependent RNA polymerase OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)
HSP 1 Score: 1981.8 bits (5133), Expect = 0.0e+00
Identity = 983/1142 (86.08%), Postives = 1035/1142 (90.63%), Query Frame = 0
Query: 13 MGKTIEIYGFRLEVTVDEVKEFLENHTGDGTVSTVRISKPKDEKARFTFATVRFGSKLAA 72
M KTIEIYGF +VTVDEVKEFLENHTGDGTVSTVRISKPKD+K RFT TVRF SKLAA
Sbjct: 1 MEKTIEIYGFGPKVTVDEVKEFLENHTGDGTVSTVRISKPKDDKTRFTSVTVRFKSKLAA 60
Query: 73 EYIVAKATAAEKQLWFGSSYLKAREVERAVVAPVRGGGEMERMEDVKGHLGSLISKEKMR 132
EYIVAKAT EK+LWF SSYLKAREVE+ + GG EMERMEDVKG LGS+ISK+KMR
Sbjct: 61 EYIVAKATTEEKKLWFESSYLKAREVEKKATS---GGPEMERMEDVKGQLGSMISKDKMR 120
Query: 133 VIWEGENWNVEFGIGVRKLCFYLSYEVDDYKMELSFENILSVELRCPLNQPSKFFLIQLQ 192
VIWEGE WNVEFG GVRKL FYLSYEVDDYKMEL FENILSVE RCPLNQPSKFFLIQ+
Sbjct: 121 VIWEGEKWNVEFGNGVRKLWFYLSYEVDDYKMELCFENILSVEFRCPLNQPSKFFLIQVS 180
Query: 193 G---------------------APRIFKKTLSSSSSRCYSKESTGFHWIRDVDFTPSSCI 252
APRIF+KT SSSSS YS ES F WIRDVDFTPSSCI
Sbjct: 181 SFFLSFFSFFLSFLSLLKLQCRAPRIFRKTPSSSSSPLYSNESNSFRWIRDVDFTPSSCI 240
Query: 253 GQSFALCLELSPEHHLPTFFQTLVGYKETYAPFILQTGSSFSSISNLVPIITPPQAFDIS 312
GQSF LCL+ SP HHLP FFQTLVGYK TY PFIL+ GSSF S SNLVPIITPPQAFDIS
Sbjct: 241 GQSFTLCLQFSPSHHLPPFFQTLVGYKVTYDPFILRKGSSFVSNSNLVPIITPPQAFDIS 300
Query: 313 YKILFKINALVQHGYLPGPTLDDEFFRLVDPSRFRPDFIEHALEKLFNMKECCYEPQKWL 372
YKILFKINAL+Q GYL GPTLDDEFFRLVD SRF PD+IEHALEKLFN+KECCY+PQKWL
Sbjct: 301 YKILFKINALLQRGYLSGPTLDDEFFRLVDSSRFHPDYIEHALEKLFNLKECCYKPQKWL 360
Query: 373 KHQYLSFYTSNQLPWKHNISLDDGLVYVHRVQITPSKVYFRGPEANLSNRVVRRFIDDID 432
K QYLS+Y SNQLPWK N+SLDDGLVYVHRVQITP KVYF GPEANLSNRVVRRFIDDID
Sbjct: 361 KDQYLSYYVSNQLPWKPNVSLDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIDDID 420
Query: 433 NFIRVSFVDEELDKLHSIDLSPRSSSAESSARTRVYDRVLSVLRNGILIGDKKFEFLAFS 492
NF+RVSFVDEELDKLHSIDL+PRSSS E++ RTRVYDRV+SVL+NGI+IGDKKFEFLAFS
Sbjct: 421 NFLRVSFVDEELDKLHSIDLAPRSSSPENNTRTRVYDRVVSVLKNGIVIGDKKFEFLAFS 480
Query: 493 ASQLRENSFWMFASREGLSAADIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVEEHE 552
ASQLRENSFWMFASR+GLSAADIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCV+EHE
Sbjct: 481 ASQLRENSFWMFASRKGLSAADIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVKEHE 540
Query: 553 IEVIPDVEVERKKIMYCFSDGIGKISKTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAI 612
IEVIPDVEVERK IMYCFSDGIGKISKTLA+KVA+KCGL HTPSAFQIRYAGYKGVVAI
Sbjct: 541 IEVIPDVEVERKNIMYCFSDGIGKISKTLAKKVAKKCGLTGHTPSAFQIRYAGYKGVVAI 600
Query: 613 DPTSKKKLSLRKSMLKYMSLDTQLDVLLWSKYQPCFLNRQVINLLSTLGIKDRVFEKKQK 672
DPTS+KKLSLRKSMLKYMSLDTQLDVLLWSKYQPCFLNRQVINLLSTLGI D VF KKQK
Sbjct: 601 DPTSEKKLSLRKSMLKYMSLDTQLDVLLWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQK 660
Query: 673 EAIEQLDSILDDPSRALEVLELMSPGEMTSILKELLLFYKPNEEPFLNMMLRTLRADKLL 732
EAI+QLDSIL+DPSRALEVLELMSPGEMTSILKELL FY PNEEPFLNMML T RA+KLL
Sbjct: 661 EAIDQLDSILEDPSRALEVLELMSPGEMTSILKELLSFYMPNEEPFLNMMLWTFRANKLL 720
Query: 733 DLRTKSRIFVPKGRTMMGCLDETRTLEYGQVFVHCSVPGRSSESNFIVKGKVVVAKNPCL 792
DL+TKSRIFVP+GRTMMGCLDETRTLEYGQVFVHCSVPGRSSE NF+VKGKVVVAKNPCL
Sbjct: 721 DLKTKSRIFVPRGRTMMGCLDETRTLEYGQVFVHCSVPGRSSEGNFVVKGKVVVAKNPCL 780
Query: 793 HPGDVRVLDAVDVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIKP 852
HPGDVR+LDA+DVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWD ELTCIK
Sbjct: 781 HPGDVRLLDAIDVKALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDSELTCIKQ 840
Query: 853 VKPMSYEPAPTMQLDHDVTIEEVQEYLANYMVNDGLGAIANAHTVFADKKPKKAMSAECI 912
VKPMSYEPAP++QLDHDVTIEEVQ+Y ANYMVNDGLGAIANAHTVFADK KKAMSAECI
Sbjct: 841 VKPMSYEPAPSIQLDHDVTIEEVQKYFANYMVNDGLGAIANAHTVFADKNSKKAMSAECI 900
Query: 913 KLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSS 972
KLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKP+KPTYVSNGVLGKLFRGVKDVSS
Sbjct: 901 KLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPDKPTYVSNGVLGKLFRGVKDVSS 960
Query: 973 DVNTLEIFTREVATKCYDPDMEVDGFAKYLREAFDYKTRYDFKLGNLMDYYGIKTEPELV 1032
DVNT EIFT+EVATKCYDPDMEVDGF KYLREAFDYKT+YDFKLGNLMDYYGIKTEPELV
Sbjct: 961 DVNTFEIFTKEVATKCYDPDMEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELV 1020
Query: 1033 SGNILRMAKSFDKRNDLEQIVFAMKSLRKEARAWFNEKGNKFTYNDNKDEGQEYAKASAW 1092
SGNIL+MAKSFDKRNDLEQI FAMKSLRKE R+WFNE +K+TY D +D+ EYA+ASAW
Sbjct: 1021 SGNILKMAKSFDKRNDLEQIAFAMKSLRKEVRSWFNENESKYTYEDIEDD--EYARASAW 1080
Query: 1093 YHVTYHPDYWGRYNEGMQRDHFLSFPWCVADKLIQIKREKTSLMNFSPMSSLIHKFGGLS 1134
Y VTYHPDYWGRYNEG QRDHFLSFPWCVADKLIQIKREK SL N SPMSSL + F G+S
Sbjct: 1081 YCVTYHPDYWGRYNEGTQRDHFLSFPWCVADKLIQIKREKMSLRNSSPMSSLQYNFDGMS 1137
BLAST of HG10009574 vs. ExPASy TrEMBL
Match:
A0A1D8RK46 (RNA-dependent RNA polymerase (Fragment) OS=Cucumis sativus OX=3659 GN=RDR1c2 PE=2 SV=1)
HSP 1 Score: 1979.5 bits (5127), Expect = 0.0e+00
Identity = 975/1118 (87.21%), Postives = 1031/1118 (92.22%), Query Frame = 0
Query: 13 MGKTIEIYGFRLEVTVDEVKEFLENHTGDGTVSTVRISKPKDEKARFTFATVRFGSKLAA 72
MGKTIEIYGFR +VT DEVKEFLENHTGDGTVSTVRISKPKDEKARFT TV F SKLAA
Sbjct: 1 MGKTIEIYGFRPQVTADEVKEFLENHTGDGTVSTVRISKPKDEKARFTSVTVLFKSKLAA 60
Query: 73 EYIVAKATAAEKQLWFGSSYLKAREVERAVVA-PVRGGGEMERMEDVKGHLGSLISKEKM 132
EYIVAK+T E++LWF SSYLKARE+E+AVVA +G EMERMEDVKGHLGS+IS KM
Sbjct: 61 EYIVAKSTTEERKLWFESSYLKARELEKAVVANETKGVLEMERMEDVKGHLGSMISNGKM 120
Query: 133 RVIWEGENWNVEFGIGVRKLCFYLSYEVDDYKMELSFENILSVELRCPLNQPSKFFLIQL 192
RVIWEGE W+VEFG G RKL FYLSYEVD+YKMEL FENILSVE RCPLN+PSKFFLIQL
Sbjct: 121 RVIWEGEKWSVEFGNGFRKLWFYLSYEVDEYKMELCFENILSVEFRCPLNEPSKFFLIQL 180
Query: 193 QGAPRIFKKTLSSSSSRCYSKESTGFHWIRDVDFTPSSCIGQSFALCLELSPEHHLPTFF 252
QGAPRIF+KT SSSSS YS +ST F WIRDVDFTPSSCIGQSF +CL+LSP HHLP FF
Sbjct: 181 QGAPRIFRKTPSSSSSPLYSNKSTSFRWIRDVDFTPSSCIGQSFTICLQLSPSHHLPPFF 240
Query: 253 QTLVGYKETYAPFILQTGSSFSSISNLVPIITPPQAFDISYKILFKINALVQHGYLPGPT 312
QTLVGYK TYAPFIL GSS S SNLVPIITPPQAFDISYKILFKINAL+QHGYL GPT
Sbjct: 241 QTLVGYKVTYAPFILHKGSSLVSNSNLVPIITPPQAFDISYKILFKINALLQHGYLSGPT 300
Query: 313 LDDEFFRLVDPSRFRPDFIEHALEKLFNMKECCYEPQKWLKHQYLSFYTSNQLPWKHNIS 372
LDDEFFRLVD SRF D+I+HALEKLFN+KECCY+PQKWLK QYLS+YTSNQLPWK NIS
Sbjct: 301 LDDEFFRLVDSSRFHSDYIDHALEKLFNLKECCYKPQKWLKDQYLSYYTSNQLPWKSNIS 360
Query: 373 LDDGLVYVHRVQITPSKVYFRGPEANLSNRVVRRFIDDIDNFIRVSFVDEELDKLHSIDL 432
LDDGLVYVHRVQITP KVYF GPEANLSNRVVRRFI DIDNF+RVSFVDEELDKLHSIDL
Sbjct: 361 LDDGLVYVHRVQITPLKVYFCGPEANLSNRVVRRFIGDIDNFLRVSFVDEELDKLHSIDL 420
Query: 433 SPRSSSAESSARTRVYDRVLSVLRNGILIGDKKFEFLAFSASQLRENSFWMFASREGLSA 492
+PRSSS E+S RTRVYDRV+SVL+NGI+IG+KKFEFLAFSASQL+ENSFWMFASREGLSA
Sbjct: 421 APRSSSHENSQRTRVYDRVVSVLKNGIVIGNKKFEFLAFSASQLKENSFWMFASREGLSA 480
Query: 493 ADIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKKIMYCFSD 552
ADIREWMGDF IRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERK I+YCFSD
Sbjct: 481 ADIREWMGDFHHIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKNIIYCFSD 540
Query: 553 GIGKISKTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRKSMLKYMSL 612
GIGKISKTLA+KVAEKCGLI+HTPSAFQIRYAGYKGVVAIDPTSKKKLSLR SMLKYMSL
Sbjct: 541 GIGKISKTLAKKVAEKCGLINHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRNSMLKYMSL 600
Query: 613 DTQLDVLLWSKYQPCFLNRQVINLLSTLGIKDRVFEKKQKEAIEQLDSILDDPSRALEVL 672
DTQLDVL WSKYQPCFLNRQVINLLSTLGI D VF KKQKEAI+QLDSIL+DPSRALEVL
Sbjct: 601 DTQLDVLSWSKYQPCFLNRQVINLLSTLGIGDDVFVKKQKEAIDQLDSILEDPSRALEVL 660
Query: 673 ELMSPGEMTSILKELLLFYKPNEEPFLNMMLRTLRADKLLDLRTKSRIFVPKGRTMMGCL 732
ELMSPGEMTSILKELL FY PNEEPFLNMMLRT RA+KLLDL+TKSRIFVP+GRTM+GCL
Sbjct: 661 ELMSPGEMTSILKELLSFYMPNEEPFLNMMLRTFRANKLLDLKTKSRIFVPEGRTMIGCL 720
Query: 733 DETRTLEYGQVFVHCSVPGRSSESNFIVKGKVVVAKNPCLHPGDVRVLDAVDVKALHHMV 792
DETRTLEYGQVFVHCSVP RSSE NF+VKGK+VVAKNPCLHPGDVRVLDAVDVKALHHMV
Sbjct: 721 DETRTLEYGQVFVHCSVPRRSSEGNFVVKGKIVVAKNPCLHPGDVRVLDAVDVKALHHMV 780
Query: 793 DCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIKPVKPMSYEPAPTMQLDHDVTI 852
DCVVFPQKGKRPHPNECSGSDLDGDLYF CWD ELTCIK VKPM+YEPAPT+QL+HDVTI
Sbjct: 781 DCVVFPQKGKRPHPNECSGSDLDGDLYFACWDLELTCIKQVKPMNYEPAPTIQLNHDVTI 840
Query: 853 EEVQEYLANYMVNDGLGAIANAHTVFADKKPKKAMSAECIKLAKLFSIAVDFPKTGVPAN 912
EE+QEY ANYMVNDG+GAIANAHTVFADK KKAMS ECIKLAKLFSIAVDFPKTGVPAN
Sbjct: 841 EEIQEYFANYMVNDGIGAIANAHTVFADKNSKKAMSVECIKLAKLFSIAVDFPKTGVPAN 900
Query: 913 LPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTLEIFTREVATKCYDPD 972
LPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNT EIFTREVATK YDPD
Sbjct: 901 LPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTFEIFTREVATKYYDPD 960
Query: 973 MEVDGFAKYLREAFDYKTRYDFKLGNLMDYYGIKTEPELVSGNILRMAKSFDKRNDLEQI 1032
MEVDGF KYLREAFDYKT+YDFKLGNLMDYYGIKTEPELVSGN+L+MAKSFDKRNDLEQI
Sbjct: 961 MEVDGFEKYLREAFDYKTKYDFKLGNLMDYYGIKTEPELVSGNVLKMAKSFDKRNDLEQI 1020
Query: 1033 VFAMKSLRKEARAWFNEKGNKFTYNDNKDEGQEYAKASAWYHVTYHPDYWGRYNEGMQRD 1092
FAMKSLRKE R+WFNE +KFTY+D +D EYAKASAWY+VTYHPDYWG YNEGMQRD
Sbjct: 1021 TFAMKSLRKEVRSWFNENESKFTYDDIED---EYAKASAWYYVTYHPDYWGCYNEGMQRD 1080
Query: 1093 HFLSFPWCVADKLIQIKREKTSLMNFSPMSSLIHKFGG 1130
HFLSFPWCVADKLIQIKR+K +L N P+SSL H F G
Sbjct: 1081 HFLSFPWCVADKLIQIKRDKMTLKNSYPVSSLFHNFDG 1115
BLAST of HG10009574 vs. ExPASy TrEMBL
Match:
A0A6J1FF44 (RNA-dependent RNA polymerase OS=Cucurbita moschata OX=3662 GN=LOC111444909 PE=3 SV=1)
HSP 1 Score: 1935.6 bits (5013), Expect = 0.0e+00
Identity = 954/1110 (85.95%), Postives = 1021/1110 (91.98%), Query Frame = 0
Query: 11 NDMGKTIEIYGFRLEVTVDEVKEFLENHTGDGTVSTVRISKPKDEKARFTFATVRFGSKL 70
NDMGKTIEIYGF +VT DEVKEF+ENHTGDGTV TVRISK DEKARFTFATV+F SKL
Sbjct: 5 NDMGKTIEIYGFPTQVTADEVKEFIENHTGDGTVLTVRISKLNDEKARFTFATVQFTSKL 64
Query: 71 AAEYIVAKATAAEKQLWFGSSYLKAREVERAVVAPVRGGGEMERMEDVKGHLGSLISKEK 130
EY+VA+A AAEK+LWFGSSYLKAR+VER + R GE+ERME+V GSL+SKE+
Sbjct: 65 GGEYVVAQA-AAEKRLWFGSSYLKARKVEREIKTAARVHGELERMENVNVQWGSLVSKEE 124
Query: 131 MRVIWEGENWNVEFGIGVRKLCFYLSYEVDDYKMELSFENILSVELRCPLNQPSKFFLIQ 190
M+VIW+G W+VE+GIGVRKL FYLSYE +YKMEL FENIL V+LRC +++ SK FLIQ
Sbjct: 125 MKVIWKGGKWSVEYGIGVRKLGFYLSYEGVEYKMELCFENILGVQLRCSVDRGSKLFLIQ 184
Query: 191 LQGAPRIFKKTLSSSSSRCYSKESTGFHWIRDVDFTPSSCIGQSFALCLELSPEHHLPTF 250
LQGAPRIFKK SSSSR S+ESTGF WIRDVDFTPSSCIGQSFALCLELS LP+F
Sbjct: 185 LQGAPRIFKKAPLSSSSRLSSEESTGFRWIRDVDFTPSSCIGQSFALCLELSHGDQLPSF 244
Query: 251 FQTLVGYKETYAPFILQTGSSFSSISNLVPIITPPQAFDISYKILFKINALVQHGYLPGP 310
FQTLVGYKE+YAPFILQTGSS SSISNLVPIITPPQ FDI YKILFKINAL+QHGYLPGP
Sbjct: 245 FQTLVGYKESYAPFILQTGSSLSSISNLVPIITPPQGFDIPYKILFKINALLQHGYLPGP 304
Query: 311 TLDDEFFRLVDPSRFRPDFIEHALEKLFNMKECCYEPQKWLKHQYLSFYTSNQLPWKHNI 370
LD+EFFRLVD SRFRPD++E+AL+KLF+ KECCYEPQKWLK QYLSFY+S QLPWK NI
Sbjct: 305 ALDNEFFRLVDSSRFRPDYVEYALDKLFHFKECCYEPQKWLKQQYLSFYSSKQLPWKPNI 364
Query: 371 SLDDGLVYVHRVQITPSKVYFRGPEANLSNRVVRRFIDDIDNFIRVSFVDEELDKLHSID 430
SLDDGLVYVHRVQITP+KVYFRGPEANLSNRVVR FIDD+DNF+RVSFVDEELDKLHSID
Sbjct: 365 SLDDGLVYVHRVQITPTKVYFRGPEANLSNRVVRHFIDDVDNFLRVSFVDEELDKLHSID 424
Query: 431 LSPRSSSAESSARTRVYDRVLSVLRNGILIGDKKFEFLAFSASQLRENSFWMFASREGLS 490
LSPR +SAE+ RTRVYDRVLSVLRNGI+IGDKKFEFLAFSASQLRENS WMFASR+GLS
Sbjct: 425 LSPR-TSAENDLRTRVYDRVLSVLRNGIVIGDKKFEFLAFSASQLRENSCWMFASRKGLS 484
Query: 491 AADIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKKIMYCFS 550
AADIREWMGD RQIRNVAKYAARLGQSFGSSR+TLCVE+HEIEVI DVEVE KI YCFS
Sbjct: 485 AADIREWMGDLRQIRNVAKYAARLGQSFGSSRRTLCVEQHEIEVISDVEVETNKITYCFS 544
Query: 551 DGIGKISKTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRKSMLKYMS 610
DGIGKIS TLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAIDPTS KKLSLRKSMLKY S
Sbjct: 545 DGIGKISGTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAIDPTSTKKLSLRKSMLKYTS 604
Query: 611 LDTQLDVLLWSKYQPCFLNRQVINLLSTLGIKDRVFEKKQKEAIEQLDSILDDPSRALEV 670
LDTQ+DVL WSKYQPCFLNRQVINLLSTLGIKDRVF KKQKEAI+QLDSIL+DPSRALEV
Sbjct: 605 LDTQVDVLSWSKYQPCFLNRQVINLLSTLGIKDRVFVKKQKEAIDQLDSILEDPSRALEV 664
Query: 671 LELMSPGEMTSILKELLLFYKPNEEPFLNMMLRTLRADKLLDLRTKSRIFVPKGRTMMGC 730
LELMSPGEMTSILKELLL YKPNEEPFLNMMLRT RA KLLDLRTKSRIFVPKGRTMMGC
Sbjct: 665 LELMSPGEMTSILKELLLLYKPNEEPFLNMMLRTFRAAKLLDLRTKSRIFVPKGRTMMGC 724
Query: 731 LDETRTLEYGQVFVHCSVPGRSSESNFIVKGKVVVAKNPCLHPGDVRVLDAVDVKALHHM 790
LDETRTLEYGQVFVHCS+PGRSSESNF+VKGKVVVAKNPCLHPGDVR+LDAVDVKALHHM
Sbjct: 725 LDETRTLEYGQVFVHCSLPGRSSESNFVVKGKVVVAKNPCLHPGDVRLLDAVDVKALHHM 784
Query: 791 VDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIKPVKPMSYEPAPTMQLDHDVT 850
VDCVVFPQKGKRPHPNECSGSDLDGDLYFV WDPELT IKPVKPMSYEPAPTMQLDHDVT
Sbjct: 785 VDCVVFPQKGKRPHPNECSGSDLDGDLYFVGWDPELTRIKPVKPMSYEPAPTMQLDHDVT 844
Query: 851 IEEVQEYLANYMVNDGLGAIANAHTVFADKKPKKAMSAECIKLAKLFSIAVDFPKTGVPA 910
IEEVQ YL YMVNDGLG IANAHTVFADKKPKKAM+AECIKLAKLFSIAVDFPKTGVPA
Sbjct: 845 IEEVQGYLVKYMVNDGLGGIANAHTVFADKKPKKAMAAECIKLAKLFSIAVDFPKTGVPA 904
Query: 911 NLPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTLEIFTREVATKCYDP 970
N P NLRV EYPDFM+KP+KPTYVSNGVLGKLFRGVKDVSSDVNT+EIF+REVATKCYDP
Sbjct: 905 NFPHNLRVREYPDFMEKPDKPTYVSNGVLGKLFRGVKDVSSDVNTVEIFSREVATKCYDP 964
Query: 971 DMEVDGFAKYLREAFDYKTRYDFKLGNLMDYYGIKTEPELVSGNILRMAKSFDKRNDLEQ 1030
DMEVDGF YL EAF++K RYDFKLGNLMDYYGIKTEPEL+SGNILRMAKSFDKRND+EQ
Sbjct: 965 DMEVDGFEDYLSEAFEFKARYDFKLGNLMDYYGIKTEPELISGNILRMAKSFDKRNDMEQ 1024
Query: 1031 IVFAMKSLRKEARAWFNEKGNKFTYNDNKDEGQEYAKASAWYHVTYHPDYWGRYNEGMQR 1090
I AMKSLRKEAR+WFNEKG+K Y+++ ++ +EYAKASAWY VTYHPDYWGRYNEGMQR
Sbjct: 1025 ISLAMKSLRKEARSWFNEKGSKSAYDEDDNKNEEYAKASAWYRVTYHPDYWGRYNEGMQR 1084
Query: 1091 DHFLSFPWCVADKLIQIKREKTSLMNFSPM 1121
DHFLSFPWCV+DKLIQIKREKT L+NFSP+
Sbjct: 1085 DHFLSFPWCVSDKLIQIKREKTCLVNFSPV 1112
BLAST of HG10009574 vs. TAIR 10
Match:
AT1G14790.1 (RNA-dependent RNA polymerase 1 )
HSP 1 Score: 1252.3 bits (3239), Expect = 0.0e+00
Identity = 644/1105 (58.28%), Postives = 807/1105 (73.03%), Query Frame = 0
Query: 13 MGKTIEIYGFRLEVTVDEVKEFLENHTGDGTVSTVRISKPKDEKARFTFATVRFGSKLAA 72
MGKTI+++GF V+ +EVK+FLE TG GTV +++ +PK R +A V+F S+
Sbjct: 1 MGKTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGGPR-VYAIVQFTSERHT 60
Query: 73 EYIVAKATAAEKQLWFGSSYLKAREVERAVVAPVRGGGEMERMEDVKGHLGSLISKEKMR 132
I+ TAA ++L++G SYLKA EVE+ +V R + + +K G +S +K
Sbjct: 61 RLII---TAAAERLYYGRSYLKAFEVEQDIVPKPR--ASLHTISGLKMFFGCQVSTKKFL 120
Query: 133 VIWEGENWNVEFGIGVRKLCFYLSYEVDDYKMELSFENILSVELRCPLNQPSKFFLIQLQ 192
+W ++ V FGIG+RKL F S+ DY++ELS+ENI ++L P + SKF +IQ+
Sbjct: 121 TLWSAQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVI 180
Query: 193 GAPRIFKK-----TLSSSSSRCYSKESTGFHWIRDVDFTPSSCIGQSFALCLELSPEHHL 252
GAP+IF+K L YS + + WIR DFT SSCIGQS A CLEL ++
Sbjct: 181 GAPKIFEKEDQPINLLFGIMDFYS-DGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLNV 240
Query: 253 PTFFQTLVGYKETYA-PFILQTGSSFSSISN-LVPIITPPQAFDISYKILFKINALVQHG 312
P F + Y E A F++++GSS+SS +N LVP++ PP F + ++ILFK+N LVQ+
Sbjct: 241 PDFRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNTLVQNA 300
Query: 313 YLPGPTLDDEFFRLVDPSRFRPDFIEHALEKLFNMKECCYEPQKWLKHQYLSFYTSNQLP 372
L GP LD +F+RL++ ++ I+H LEKLF++ ECCYEP WL+ +Y + + +LP
Sbjct: 301 CLSGPALDLDFYRLLNQKKYDRALIDHCLEKLFHLGECCYEPAHWLRDEYKKWISKGKLP 360
Query: 373 WKHNISLDDGLVYVHRVQITPSKVYFRGPEANLSNRVVRRFIDDIDNFIRVSFVDEELDK 432
ISLDDGLVY++RVQ+TP++VYF GPE N+SNRV+R + I+NF+RVSFVDE+L+K
Sbjct: 361 LSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDEDLEK 420
Query: 433 LHSIDLSPRSSSAESSARTRVYDRVLSVLRNGILIGDKKFEFLAFSASQLRENSFWMFAS 492
+ S+DLSPRSS + RT++YDR+ SVLR+GI+IGDKKFEFLAFS+SQLRENS WMFA
Sbjct: 421 VRSMDLSPRSS---TQRRTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWMFAP 480
Query: 493 REGLSAADIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVEEHEIEVIPDVEVERKKI 552
+ ++AA IR WMGDF IRNVAKYAARLGQSF SSR+TL V EIEVIPDVE+
Sbjct: 481 IDRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGT 540
Query: 553 MYCFSDGIGKISKTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAIDPTSKKKLSLRKSM 612
Y FSDGIGKIS A KVA KCGL +PSAFQIRY GYKGVVA+DP S KKLSLRKSM
Sbjct: 541 RYVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSM 600
Query: 613 LKYMSLDTQLDVLLWSKYQPCFLNRQVINLLSTLGIKDRVFEKKQKEAIEQLDSILDDPS 672
K+ S +T+LDVL WSKYQPC++NRQ+I LLSTLG+ D VFEKKQ+E +++LD+IL P
Sbjct: 601 SKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPL 660
Query: 673 RALEVLELMSPGEMTSILKELLLF-YKPNEEPFLNMMLRTLRADKLLDLRTKSRIFVPKG 732
A E L LM+PGE T+ILK L+L YKP+ EPFL+MML+ RA KLL+LRTK+RIF+ G
Sbjct: 661 EAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGG 720
Query: 733 RTMMGCLDETRTLEYGQVFVHCSVPGRSSESNFIVKGKVVVAKNPCLHPGDVRVLDAVDV 792
R+MMGCLDETRTLEYGQV V S P R FI+ G VVVAKNPCLHPGDVRVL AV+V
Sbjct: 721 RSMMGCLDETRTLEYGQVVVQYSDPMRPGR-RFIITGPVVVAKNPCLHPGDVRVLQAVNV 780
Query: 793 KALHHMVDCVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPELTCIKPVKPMSYEPAPTMQ 852
AL+HMVDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD EL + +PM Y P PT
Sbjct: 781 PALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWDQELVPPRTSEPMDYTPEPTQI 840
Query: 853 LDHDVTIEEVQEYLANYMVNDGLGAIANAHTVFADKKPKKAMSAECIKLAKLFSIAVDFP 912
LDHDVTIEEV+EY ANY+VND LG IANAHT FADK+P KA S CI+LAK FS AVDFP
Sbjct: 841 LDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELAKKFSTAVDFP 900
Query: 913 KTGVPANLPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDVSSDVNTLEIFTREVA 972
KTGV A +P++L V EYPDFM+KP+KPTY S V+GKLFR VK+ + + +++ FT +VA
Sbjct: 901 KTGVAAVIPQHLYVKEYPDFMEKPDKPTYESKNVIGKLFREVKERAPPLISIKSFTLDVA 960
Query: 973 TKCYDPDMEVDGFAKYLREAFDYKTRYDFKLGNLMDYYGIKTEPELVSGNILRMAKSFDK 1032
+K YD DMEVDGF +Y+ EAF K YDFKLGNLMDYYGIKTE E++SG I+RM+KSF K
Sbjct: 961 SKSYDKDMEVDGFEEYVDEAFYQKANYDFKLGNLMDYYGIKTEAEILSGGIMRMSKSFTK 1020
Query: 1033 RNDLEQIVFAMKSLRKEARAWFNEKGNKFTYNDNKDEGQEYAKASAWYHVTYHPDYWGRY 1092
R D E I A+++LRKE + FN +++E E AKASAWYHVTYH YWG Y
Sbjct: 1021 RRDAESIGRAVRALRKETLSLFNA---------SEEEENESAKASAWYHVTYHSSYWGLY 1080
Query: 1093 NEGMQRDHFLSFPWCVADKLIQIKR 1110
NEG+ RDHFLSF WCV DKL++IK+
Sbjct: 1081 NEGLNRDHFLSFAWCVYDKLVRIKK 1085
BLAST of HG10009574 vs. TAIR 10
Match:
AT4G11130.1 (RNA-dependent RNA polymerase 2 )
HSP 1 Score: 747.7 bits (1929), Expect = 1.4e-215
Identity = 448/1149 (38.99%), Postives = 650/1149 (56.57%), Query Frame = 0
Query: 16 TIEIYGFRLEVTVDEVKEFLENHTGDGTVSTVRISKPKDEKARFTFATVRFGSKLAAEYI 75
T++I + DE+ FLE H G+ TV + I +D FA V+F +
Sbjct: 11 TVKISNVPQTIVADELLRFLELHLGEDTVFALEIPTTRDNWKPRDFARVQFTTLEVKSR- 70
Query: 76 VAKATAAEKQLWFGSSYLKAREVERAVVAPVRGGGEMERMEDVKGHLGSLISKEKMRVI- 135
A+ +++ +L F + L+ E ++ R +R++D+ +G S EK
Sbjct: 71 -AQLLSSQSKLLFKTHNLRLSEAYDDIIP--RPVDPRKRLDDIVLTVGFPESDEKRFCAL 130
Query: 136 --WEGEN-WNVEFGIGVRKLCFYLSYEVDDYKMELSFENILSVELRCPLNQPSKF--FLI 195
W+G W + R++ F++ D YK+E+ FE+I+ C S+ FL+
Sbjct: 131 EKWDGVRCWIL---TEKRRVEFWVWESGDCYKIEVRFEDIIETLSCCVNGDASEIDAFLL 190
Query: 196 QLQGAPRIFKK------TLSSSSSRCYSKESTGFHWIRDVDFTPSSCIGQSFALCLELSP 255
+L+ P++FK+ T S + KE F WIR DF+ S IG S CLE+
Sbjct: 191 KLKYGPKVFKRVTVHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFCLEVHN 250
Query: 256 EHHLPTFFQTLVGYKETYAPFILQTGSSFSSISNLVPIITPP-QAFDISYKILFKINALV 315
+ F L Y+E G +F+S + +VP++ + Y+ILF++NALV
Sbjct: 251 GSTMLDIFSGLPYYREDTLSLTYVDGKTFASAAQIVPLLNAAILGLEFPYEILFQLNALV 310
Query: 316 QHGYLP-GPTLDDEFFRLVDPSRFRPDFIEHALEKLFNMKECCYEPQKWLKHQYLSFYTS 375
+ D E +++ + L+KL CY+P ++K Q S
Sbjct: 311 HAQKISLFAASDMELIKILRGMSLETALV--ILKKLHQQSSICYDPVFFVKTQMQSVVKK 370
Query: 376 NQLPWKHNIS------LDDGLVYVHRVQITPSKVYFRGPEANLSNRVVRRFIDDIDNFIR 435
KH+ + + ++ R +TPSK+Y GPE +N VV+ F + + +F+R
Sbjct: 371 ----MKHSPASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDFMR 430
Query: 436 VSFVDEELDKLHSIDLSPRSSSA--ESSARTRVYDRVLSVLRNGILIGDKKFEFLAFSAS 495
V+FV+E+ KL + LS S +RT +Y+RVLS+L GI +G K+FEFLAFSAS
Sbjct: 431 VTFVEEDWSKLPANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAFSAS 490
Query: 496 QLRENSFWMFASREGLSAADIREWMGDFRQIRNVAKYAARLGQSFGSSRKTLCVEEHEIE 555
QLR NS WMFAS E + A DIREWMG FR+IR+++K AAR+GQ F +SR+TL V ++E
Sbjct: 491 QLRGNSVWMFASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQDVE 550
Query: 556 VIPDVEVERKKIMYCFSDGIGKISKTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAIDP 615
IPD+EV YCFSDGIGKIS A++VA+KCGL SH PSAFQIRY GYKGV+A+D
Sbjct: 551 QIPDIEVTTDGADYCFSDGIGKISLAFAKQVAQKCGL-SHVPSAFQIRYGGYKGVIAVDR 610
Query: 616 TSKKKLSLRKSMLKYMSLDTQLDVLLWSKYQPCFLNRQVINLLSTLGIKDRVFEKKQKEA 675
+S +KLSLR SMLK+ S + L+V W++ PCFLNR++I LLSTLGI+D +FE Q
Sbjct: 611 SSFRKLSLRDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQAVH 670
Query: 676 IEQLDSILDDPSRALEVLELMSPGEMTSIL-KELLLFYKPNEEPFLNMMLRTLRADKLLD 735
+ L ++L+D AL VL+ +S ++L K LL Y P+ EP+L+MMLR +L +
Sbjct: 671 LSMLGNMLEDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQLSE 730
Query: 736 LRTKSRIFVPKGRTMMGCLDETRTLEYGQVFVHCSVP------------GRSSESNFIVK 795
L+++ RI VPKGR ++GC+DE LEYGQV+V ++ + E +V
Sbjct: 731 LKSRCRILVPKGRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKIDEETSVVI 790
Query: 796 GKVVVAKNPCLHPGDVRVLDAVDVKALHH--MVDCVVFPQKGKRPHPNECSGSDLDGDLY 855
GKVVV KNPCLHPGD+RVLDA+ +DC++FPQKG+RPHPNECSG DLDGD +
Sbjct: 791 GKVVVTKNPCLHPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGERPHPNECSGGDLDGDQF 850
Query: 856 FVCWDPELTCIKPVKPMSYEPAPTMQLDHDVTIEEVQEYLANYMVNDGLGAIANAHTVFA 915
FV WD ++ + PM Y + +DHDVT+EE+ ++ +YM++D LG I+ AH V A
Sbjct: 851 FVSWDEKIIPSEMDPPMDYAGSRPRLMDHDVTLEEIHKFFVDYMISDTLGVISTAHLVHA 910
Query: 916 DKKPKKAMSAECIKLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPNKPTYVSNGV 975
D+ P+KA S +C++LA L S AVDF KTG PA +P L+ E+PDF+++ KPTY+S V
Sbjct: 911 DRDPEKARSQKCLELANLHSRAVDFAKTGAPAEMPYALKPREFPDFLERFEKPTYISESV 970
Query: 976 LGKLFRGVKDVSSDVNTLEIFTREVATKCYDPDMEVDGFAKYLREAFDYKTRYDFKLGNL 1035
GKL+R VK S + + T YD +E GF ++ A ++ Y KL +L
Sbjct: 971 FGKLYRAVK---SSLAQRKPEAESEDTVAYDVTLEEAGFESFIETAKAHRDMYGEKLTSL 1030
Query: 1036 MDYYGIKTEPELVSGNI----LRMAKSFDKRNDL-EQIVFAMKSLRKEARAWFNEKGNKF 1095
M YYG E E+++G + + +A+ + D+ ++I ++K L KEA WF +
Sbjct: 1031 MIYYGAANEEEILTGILKTKEMYLARDNRRYGDMKDRITLSVKDLHKEAMGWFEK----- 1090
Query: 1096 TYNDNKDEGQEYAKASAWYHVTYHPDYWGRYNEGMQRDHFLSFPWCVADKLIQIKREKTS 1123
+DE Q+ ASAWY+VTY+P N ++ FLSFPW V D L+ IK E
Sbjct: 1091 ---SCEDEQQKKKLASAWYYVTYNP------NHRDEKLTFLSFPWIVGDVLLDIKAENAQ 1128
BLAST of HG10009574 vs. TAIR 10
Match:
AT3G49500.1 (RNA-dependent RNA polymerase 6 )
HSP 1 Score: 587.4 bits (1513), Expect = 2.4e-167
Identity = 397/1069 (37.14%), Postives = 573/1069 (53.60%), Query Frame = 0
Query: 122 LGSLISKEKMRVIW--EGENWNVEFGIGVRKLCFYLSYEVD------------DYKMELS 181
+G+L+S++ V W EG ++ V+ K CF S DYK+EL
Sbjct: 139 IGTLVSRDDFFVSWRAEGVDFLVDPFDNTCKFCFRKSTAFSFKDAVMHAVINCDYKLELL 198
Query: 182 FENILSVELRCPLNQPSKFFLIQLQGAPRIFKKTLSSSSSRCYSKE--STGFHWIRDVDF 241
+I +V L+ ++QL +PR++ +T + WIR DF
Sbjct: 199 VRDIQTVRQYKTLH--GFVLILQLASSPRVWYRTADDDIYDTVPGDLLDDDDPWIRTTDF 258
Query: 242 TPSSCIGQSFALCLELSPEHH------LPTFFQTLVGYKETYAPFILQTGSSFSS-ISNL 301
T IG+ + + +SP + L F V + P ++ F +S+
Sbjct: 259 TQVGAIGRCHSYRVLISPRYENKLRTALDYFRMRRVQEERVRWPPRIRNEPCFGEPVSDH 318
Query: 302 VPIITPPQAFDISYKILFKINALVQHGYLPGPTLDDEFFRLVDPSRFRPDFIEHA-LEKL 361
I + IS++I+F +N+++ G L + FF L+ R +P + A L+ L
Sbjct: 319 FFCIHHKEG--ISFEIMFLVNSVLHRGVFNQFQLTERFFDLL---RNQPKDVNIASLKHL 378
Query: 362 FNMKECCYEPQKWLKHQYLSFYTSNQLPWKHNISLDDGLVYVHRVQITPSKVYFRGPEAN 421
K ++ K LK + +L H S D + + R+ ITP++ Y PE
Sbjct: 379 CTYKRPVFDAYKRLKLVQEWIQKNPKLLGSHEQSED--ISEIRRLVITPTRAYCLPPEVE 438
Query: 422 LSNRVVRRFIDDIDNFIRVSFVDEELDKLHSIDLS-------PRSSSAESSARTRVYDRV 481
LSNRV+RR+ + F+RV+F+DE + ++S LS +S+ S +T V+ RV
Sbjct: 439 LSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKDLTSSSFSQKTYVFKRV 498
Query: 482 LSVLRNGILIGDKKFEFLAFSASQLRENSFWMFASREGLSAADIREWMGDFRQIRNVAKY 541
S+L +G + +K+ FLAFSA+QLR+ S W FA +DI+ WMG F+ +NVAK
Sbjct: 499 KSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRVSDIKTWMGKFKD-KNVAKC 558
Query: 542 AARLGQSFGSSRKTLCVEEHEIEV-IPDVEVERKKIMYCFSDGIGKISKTLAEKVAEKCG 601
AAR+G F S+ T+ V HE++ +PD+E + Y FSDGIG I+ LA++V EK
Sbjct: 559 AARMGLCFSSTYATVDVMPHEVDTEVPDIE----RNGYVFSDGIGTITPDLADEVMEKLK 618
Query: 602 L-ISHTPSAFQIRYAGYKGVVAIDPTSKK--KLSLRKSMLKYMSLDTQLDVLLWSKYQPC 661
L + ++P A+QIRYAG+KGVVA P+ +L+LR SM K+ S T L++ W+++QP
Sbjct: 619 LDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKKFFSKHTILEICSWTRFQPG 678
Query: 662 FLNRQVINLLSTLGIKDRVFEKKQKEAIEQLDSILDDPSRALEVLELMSPGEMTSILKEL 721
FLNRQ+I LLS LG+ D +F Q+ + +L+ ILDD A EVL + + L
Sbjct: 679 FLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVAFEVLTASCAEQGNTAAIML 738
Query: 722 LLFYKPNEEPFLNMMLRTLRADKLLDLRTKSRIFVPKGRTMMGCLDETRTLEYGQVFVHC 781
+KP EP L ML ++R +L LR KSRIFV GR +MGCLDE LE+GQ F+
Sbjct: 739 SAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGCLDEAGILEHGQCFIQV 798
Query: 782 SVP----------GRSSESNF---IVKGKVVVAKNPCLHPGDVRVLDAVDVKALHHMVDC 841
S P R E+ +VKG V +AKNPCLHPGDVR+L+AVDV LHHM DC
Sbjct: 799 SKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLHPGDVRILEAVDVPQLHHMYDC 858
Query: 842 VVFPQKGKRPHPNECSGSDLDGDLYFVCWDPEL--TCIKPVKPMSYEPAPTMQLDHDVTI 901
++FPQKG RPH NE SGSDLDGDLYFV WD +L K M Y+ A L V
Sbjct: 859 LIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRKSYPAMHYDAAEEKSLGRAVNH 918
Query: 902 EEVQEYLANYMVNDGLGAIANAHTVFADKKPKKAMSAECIKLAKLFSIAVDFPKTGVPAN 961
+++ ++ A + N+ LG I NAH V AD+ AM EC+ LA+L + AVDFPKTG +
Sbjct: 919 QDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEECLLLAELAATAVDFPKTGKIVS 978
Query: 962 LPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVKDV-SSDVNTLEIFTREVATKCYDP 1021
+P +L+ YPDFM K + TY SN +LG+L+R VK+V D + + + YD
Sbjct: 979 MPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKEVYDEDAEASSEESTDPSAIPYDA 1038
Query: 1022 DMEVDGFAKYLREAFDYKTRYDFKLGNLMDYYGIKTEPELVSGNILRMAKSFDKRND--L 1081
+E+ GF + EA+ +K YD +L L+ Y ++ E E+V+G+I M K K+
Sbjct: 1039 VLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKEEEIVTGHIWSMPKYTSKKQGELK 1098
Query: 1082 EQIVFAMKSLRKEARAWFNEKGNKFTYNDNKDEGQE------YAKASAWYHVTYHPDYWG 1124
E++ + SL+KE R F E T D+++ +E KASAWYHVTYHP++
Sbjct: 1099 ERLKHSYNSLKKEFRKVFEE-----TIPDHENLSEEEKNILYEKKASAWYHVTYHPEWVK 1158
BLAST of HG10009574 vs. TAIR 10
Match:
AT2G19930.1 (RNA-dependent RNA polymerase family protein )
HSP 1 Score: 118.2 bits (295), Expect = 4.2e-26
Identity = 132/482 (27.39%), Postives = 213/482 (44.19%), Query Frame = 0
Query: 540 VERKKIMYCFSDGIGKISKTLA---------------EKVAEKCGLISHTPSAFQIRYAG 599
+++ K SDG G IS+ LA E + E C F++ Y G
Sbjct: 389 LDKNKKPCIHSDGTGYISEDLARMCPLNIFKGKCLRSESIQEACYQDPPLLIQFRMFYDG 448
Query: 600 Y--KGVVAID-PTSKKKLSLRKSMLKY--------MSLDTQLDVLLWSK-YQPCFLNRQV 659
Y KG ++ + + +R SM+K S L+V+ S + L++ +
Sbjct: 449 YAVKGTFLLNKKLCPRTVQVRPSMIKVSKDPSLSNFSTFNALEVVTTSNPPKRTKLSKNL 508
Query: 660 INLLSTLGIKDRVFEKKQKEAIEQLDSILDDPSRALEVLELMSPGEM-TSILKELLLFYK 719
+ LLS GI + F +E+ SI + AL ++ GEM +++L
Sbjct: 509 VALLSYGGIPNEFFLDILLNTLEESKSIFYNKRAALNA--ALNYGEMDDQNAAQMILVGI 568
Query: 720 PNEEPFLNMMLRTLRADKLLDLRTKSRIFVPKGRTMMGCLDETRTLEYGQVFVHCSVPGR 779
P +EP L L L + DL+ ++ V + +MG +D T L+ +V V
Sbjct: 569 PLDEPHLKNYLSILLKTEKNDLKA-GKLPVTESYYLMGTVDPTGALKEDEVCV------- 628
Query: 780 SSESNFIVKGKVVVAKNPCLHPGDVRVLDAVDVKALHHMVD----CVVFPQKGKRPHPNE 839
ES I G+V+V +NP LH GD+ +L A VKAL V V FPQKG R +E
Sbjct: 629 ILESGQI-SGEVLVYRNPGLHFGDIHILKATYVKALEEYVGNSKFAVFFPQKGPRSLGDE 688
Query: 840 CSGSDLDGDLYFVCWDPE-LTCIKPVKPMSYEPAPTM----QLDHDVTIEEVQEYL---- 899
+G D DGD+YF+ +PE L KP +P P+ + ++ EE++E L
Sbjct: 689 IAGGDFDGDMYFISRNPELLENFKPSEPWVSLTPPSKSNSGRAPSQLSPEELEEELFEMF 748
Query: 900 --ANYMVNDGLGAIANAHTVFADK---------KPKKAMSAECIKLAKLFSIAVDFPKTG 959
A + ++ +G A++ D+ + K M + ++L ++ A+D PK G
Sbjct: 749 LTAGFHASNVIGIAADSWLTIMDRFLILGDDRAEEKAEMKKKMLELIDIYYDALDAPKKG 808
Query: 960 VPANLPRNLRVHEYPDFMDKPNKPTYVSNGVLGKLFRGVK-------DVSSDVNTLEIFT 963
LP L+ +P +M++ K + S +LG +F VK SS+++ L F
Sbjct: 809 DKVYLPNKLKPDIFPHYMERDKK--FQSTSILGLIFDFVKSQTTEEPSPSSEISKLPCFE 857
BLAST of HG10009574 vs. TAIR 10
Match:
AT2G19910.1 (RNA-dependent RNA polymerase family protein )
HSP 1 Score: 113.6 bits (283), Expect = 1.0e-24
Identity = 115/424 (27.12%), Postives = 187/424 (44.10%), Query Frame = 0
Query: 557 SKTLAEKVAEKCGLISHTPSAFQIRYAGYKGVVAIDPTSKK----KLSLRKSMLKY---- 616
SK L + CG F+I Y GY V T+KK + +R SM+K
Sbjct: 434 SKNLNFEGQGPCGQEPPLLIQFRIFYNGY-AVKGTFLTNKKLPPRTVQVRPSMIKVYEDR 493
Query: 617 ----MSLDTQLDVLLWSK-YQPCFLNRQVINLLSTLGIKDRVFEKKQKEAIEQLDSILDD 676
+S L+V+ S + L+R ++ LLS G+ + F + +E+ +I
Sbjct: 494 TLSNLSTFNSLEVVTTSNPPRKARLSRNLVALLSYGGVPNDFFLNILRNTLEESKTIFYS 553
Query: 677 PSRALEVLELMSPGEMTSILKELLLFYKPNEEPFLNMMLRTLRADKLLDLRTKSRIFVPK 736
A + + T+ +++L P +EP+L L L + L+ R + +
Sbjct: 554 ERAAFKAAINYGDDQYTA---DMILVGIPLDEPYLKDRLSYLLKTERNALKA-GRFPIDE 613
Query: 737 GRTMMGCLDETRTLEYGQVFVHCSVPGRSSESNFIVKGKVVVAKNPCLHPGDVRVLDAVD 796
+MG +D T L+ ++ V S + + G V+V +NP LH GD+ VL A
Sbjct: 614 SYYIMGTVDPTGELKENEICVIL----HSGQ----ISGDVLVYRNPGLHFGDIHVLKATY 673
Query: 797 VKALHHMVD----CVVFPQKGKRPHPNECSGSDLDGDLYFVCWDPE-LTCIKPVKPMSYE 856
VKAL V V FPQKG R +E +G D DGD+YF+ +P+ L KP +P
Sbjct: 674 VKALEDYVGNAKFAVFFPQKGPRSLGDEIAGGDFDGDMYFISRNPKLLEHFKPSEPWVSS 733
Query: 857 PAPTM----QLDHDVTIEEVQEYL------ANYMVNDGLGAIANAHTVFAD--------- 916
P+ + +++ EE++E L A + D +G A+ D
Sbjct: 734 SKPSKIYCGRKPSELSEEELEEELFKMFLKARFCKRDVIGMAADCWLGIMDPFLTLGDES 793
Query: 917 KKPKKAMSAECIKLAKLFSIAVDFPKTGVPANLPRNLRVHEYPDFMDKPNKPTYVSNGVL 944
K K +KL ++ A+D PK G +LP +L + +P +M++ K + S +L
Sbjct: 794 AKEKYERKKNILKLIDIYYDALDAPKKGAKVDLPPDLEIKNFPHYMERDPKRDFRSTSIL 844
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_038875555.1 | 0.0e+00 | 92.33 | probable RNA-dependent RNA polymerase 1 [Benincasa hispida] | [more] |
| ALM88235.1 | 0.0e+00 | 87.79 | RNA-dependent RNA polymerase 1c [Cucumis sativus] | [more] |
| XP_031740912.1 | 0.0e+00 | 87.79 | probable RNA-dependent RNA polymerase 1 [Cucumis sativus] >KGN52010.2 hypothetic... | [more] |
| ADN33705.1 | 0.0e+00 | 86.08 | RNA-dependent RNA polymerase [Cucumis melo subsp. melo] | [more] |
| XP_031741021.1 | 0.0e+00 | 87.30 | probable RNA-dependent RNA polymerase 1 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Q9LQV2 | 0.0e+00 | 58.28 | RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1 | [more] |
| Q0DXS3 | 3.2e-265 | 61.67 | Probable RNA-dependent RNA polymerase 1 OS=Oryza sativa subsp. japonica OX=39947... | [more] |
| O82504 | 2.0e-214 | 38.99 | RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana OX=3702 GN=RDR2 PE=1 SV=1 | [more] |
| Q7XM31 | 4.7e-208 | 40.97 | Probable RNA-dependent RNA polymerase 2 OS=Oryza sativa subsp. japonica OX=39947... | [more] |
| Q9SG02 | 3.4e-166 | 37.14 | RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana OX=3702 GN=RDR6 PE=1 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A0S1YCZ4 | 0.0e+00 | 87.79 | RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=RDR1c PE=2 SV=1 | [more] |
| A0A0A0KRH3 | 0.0e+00 | 87.39 | RNA-dependent RNA polymerase OS=Cucumis sativus OX=3659 GN=Csa_5G564290 PE=3 SV=... | [more] |
| E5GB63 | 0.0e+00 | 86.08 | RNA-dependent RNA polymerase OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1 | [more] |
| A0A1D8RK46 | 0.0e+00 | 87.21 | RNA-dependent RNA polymerase (Fragment) OS=Cucumis sativus OX=3659 GN=RDR1c2 PE=... | [more] |
| A0A6J1FF44 | 0.0e+00 | 85.95 | RNA-dependent RNA polymerase OS=Cucurbita moschata OX=3662 GN=LOC111444909 PE=3 ... | [more] |
