HG10009566 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10009566
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Ankyrin repeat-containing protein
Location	Chr06: 7534109 .. 7534531 (+)
RNA-Seq Expression	HG10009566
Synteny	HG10009566

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAAATGGGAGGGCGAAAAACACCATAACAAGCAATTCAATCTCAGATACACAACTCTCCATACAAACAAAGCAAAAAACGCGGCTCAATTGAGGTATTTCAGATAAAAGACGAATAATACCAGGAACTTGGCGAGCCAAATTGGCAAGAACGGAGTCAGCCTCATCAGAATCGCCGGCTTCCGGGGACTCAAAGCGCAAGGGAAGATTGTGAGGAAGGACAATGAGTTCAGAACCTTTGGGAATGTGGTCAGAAGCGAGGAGTCCAAGGCCAGTATGGGCATCGGGAGCGGGTGCTATGTTCAGAGCGTGGTGGACAAATCCACCTTCTCTGCAGACCCACTTGATGAGGTCCGGGGGATGAGGAACCAGCCTGGAGGAGAAAGAAGGAGAAAGAGAGGGCATGGAGGCGGAGGATAA

mRNA sequence

ATGAAAAAATGGGAGGGCGAAAAACACCATAACAAGCAATTCAATCTCAGATACACAACTCTCCATACAAACAAAGCAAAAAACGCGGCTCAATTGAGGAACTTGGCGAGCCAAATTGGCAAGAACGGAGTCAGCCTCATCAGAATCGCCGGCTTCCGGGGACTCAAAGCGCAAGGGAAGATTGTGAGGAAGGACAATGAGTTCAGAACCTTTGGGAATGTGGTCAGAAGCGAGGAGTCCAAGGCCAGTATGGGCATCGGGAGCGGGTGCTATGTTCAGAGCGTGGTGGACAAATCCACCTTCTCTGCAGACCCACTTGATGAGGTCCGGGGGATGAGGAACCAGCCTGGAGGAGAAAGAAGGAGAAAGAGAGGGCATGGAGGCGGAGGATAA

Coding sequence (CDS)

ATGAAAAAATGGGAGGGCGAAAAACACCATAACAAGCAATTCAATCTCAGATACACAACTCTCCATACAAACAAAGCAAAAAACGCGGCTCAATTGAGGAACTTGGCGAGCCAAATTGGCAAGAACGGAGTCAGCCTCATCAGAATCGCCGGCTTCCGGGGACTCAAAGCGCAAGGGAAGATTGTGAGGAAGGACAATGAGTTCAGAACCTTTGGGAATGTGGTCAGAAGCGAGGAGTCCAAGGCCAGTATGGGCATCGGGAGCGGGTGCTATGTTCAGAGCGTGGTGGACAAATCCACCTTCTCTGCAGACCCACTTGATGAGGTCCGGGGGATGAGGAACCAGCCTGGAGGAGAAAGAAGGAGAAAGAGAGGGCATGGAGGCGGAGGATAA

Protein sequence

MKKWEGEKHHNKQFNLRYTTLHTNKAKNAAQLRNLASQIGKNGVSLIRIAGFRGLKAQGKIVRKDNEFRTFGNVVRSEESKASMGIGSGCYVQSVVDKSTFSADPLDEVRGMRNQPGGERRRKRGHGGGG

Homology

[Close]

BLAST of HG10009566 vs. NCBI nr
Match: RVX12475.1 (Ankyrin repeat-containing protein [Vitis vinifera])

HSP 1 Score: 71.2 bits (173), Expect = 7.2e-09
Identity = 40/103 (38.83%), Postives = 63/103 (61.17%), Query Frame = 0


Query: 27  KNAAQLRNLASQIGKNGVSLIRIAGFRGLKAQGKIVRKDNEFRTFGNVVRSEESKASMGI 86
           K+  + RNL  QI +NGV+ I   GF+  K QG +VR+ N+ R F +++RS +SKA+ G+
Sbjct: 4   KDKLRTRNLTGQIHQNGVNSISTLGFKRAKPQGNVVREGNQVRAFRDILRSHQSKAT-GV 63

Query: 87  GSGCYVQSVVDKSTFSADPLDEVRGMRNQPGGERRRKRGHGGG 130
            +  Y   +V+++ FS  P D++R + +QP    R  RG G G
Sbjct: 64  STWSYCHCLVNETPFSPHPFDKIRWVGHQPPRMARGGRGRGSG 105

[Close]

BLAST of HG10009566 vs. ExPASy TrEMBL
Match: A0A438JU61 (Ankyrin repeat-containing protein OS=Vitis vinifera OX=29760 GN=VvCHDp000427_1 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 3.5e-09
Identity = 40/103 (38.83%), Postives = 63/103 (61.17%), Query Frame = 0


Query: 27  KNAAQLRNLASQIGKNGVSLIRIAGFRGLKAQGKIVRKDNEFRTFGNVVRSEESKASMGI 86
           K+  + RNL  QI +NGV+ I   GF+  K QG +VR+ N+ R F +++RS +SKA+ G+
Sbjct: 4   KDKLRTRNLTGQIHQNGVNSISTLGFKRAKPQGNVVREGNQVRAFRDILRSHQSKAT-GV 63

Query: 87  GSGCYVQSVVDKSTFSADPLDEVRGMRNQPGGERRRKRGHGGG 130
            +  Y   +V+++ FS  P D++R + +QP    R  RG G G
Sbjct: 64  STWSYCHCLVNETPFSPHPFDKIRWVGHQPPRMARGGRGRGSG 105

The following BLAST results are available for this feature:

BLAST of HG10009566 vs. NCBI nr


Match Name	E-value	Identity	Description
RVX12475.1	7.2e-09	38.83	Ankyrin repeat-containing protein [Vitis vinifera]	[more]

BLAST of HG10009566 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10009566 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438JU61	3.5e-09	38.83	Ankyrin repeat-containing protein OS=Vitis vinifera OX=29760 GN=VvCHDp000427_1 P...	[more]

BLAST of HG10009566 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..130
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10009566.1	HG10009566.1	mRNA