HG10009561 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10009561
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	ubiquitin-conjugating enzyme E2 variant 1A-like
Location	Chr06: 7486703 .. 7490327 (-)
RNA-Seq Expression	HG10009561
Synteny	HG10009561

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGACGAGGCCGCGAAGGTAGTTGGTAAGTCTTTCAAACCCTAGCAATTCCAATTCCACAATCCGACATTTCCAGTCTTGTTAGGTTTTTTGTTCTTTTTTCATGGCAATTCTGCTTCTGACAATGATTTCTTCTTCTTCTTTGGGATGTTGGAGTTTGTTCTGTTTGGTAATCAACTTCTATTTTGATTTTTTTCCTCCTACAAGGGAGTGTGATGTGTTTTGCGTACTTGGAAAATGGAAGTGGAAACTCCCTTAGTTAATTCAGATTTTGTTTTATTTAGTTGGGTCGCAACTGTCGCGCACAGGAGATGTTTGGGTATACTTTTTTTGTTGGTTTACTCCGAATTGAAAATAGTGTGTGTGGGTTCTGCGGGATGGGTTGTACTAACTGTTGGCTTAATCCTTGACGTTTTACTTTGGGCTATATATTATGTTATCTGGGTTACAAATACAATAGATGGACAGACAGTTTGAAGGATAATCTGATTGTTTAATTTCCTTTACCTTGGTTTCTAATTAAATATATATGTGTGTGTGTGTGTTTGTGTTATTTCTTCGCCAATCTGTAATTTATTGAAGAAATGGCAATTAACCTACGAAAGATTGTCATGGTTGGAGGACAGTAAATAAGGGTGGATATGAGGACTGCTGTTTAAGTAGCAGAGACTCGTGGAGATGTTGTTTAATTGTGATAGTGAACTTCTGCTTACGTTTTCAATCATACAACTTTACTTCTTCGAGTGATGGTGTGCAACTTCATAGTTACAATGTCTGAAATTCCTTGGGTTCATGCATTTGCTGGAGCTCTGACTTCTGCGCTGACGCTCCTACGATTTTTTAAATCTCATTTTGTTCTGGATTCCTTACTTGTTCGATAAGATGTAGTTTCTGAAGTAGTCTCATAAGAAATTGTGAAGGAAGGTACATGCTGTTATATAAATAAGTTAGATTGATTTAGCTAAGTGGCTTGGTTTGATCTGACAGGGAACAATCAAATCAACAGGCTTTAATATGTTGTACTTGTCATAATAATTAATAGATTGGTGACAGGCAACAGCCTTGCTGTTGACTACATTCACAAAATGAAAAGGTTTGTATTTGTTACTCTGATGATGGTGGCATATGAAGCATATAGAAAAGGTCCGCTTGTTCTGCCTGAGAACTAAGGGCTTAAACAATTCTTTATGACTTATGAAACCTTTATCCTCTTTCTTTCAAGAGTTGGTTTTATTTTTAAGAACATTATAGCCATATTCAAAATGTTGTTTTCTTATGTTCCAAGACTCAGACAACCGTGTTTTATTGCTTAGTTATTGACTTATTGCTACTATCGTAATGAAAAATTTTCACTTTGTTCAAAAAGTTTATACTCGTTGCACTATGAGCTCTAATTTTAACAATATTATCGTTTTTGCAGTTCCTCGAAGCTTCAGATTACTGGAAGAACTTGAAAGAGGTGAAAAAGGAATCGGGGATGGAACTGTGAGTTATGGAATGGATGATGCTGATGATATCTATATGGCGTCTTGGACAGGAACTATTATTGGGCCACCTAACGTAAGTTTAATTTTCATCCTTTTTACGCCTTTTCTTATGGTGTCTCTGATGGCATTTGGATCTGCCTTTATATACATTGATATGGATAGTTACAAACAATGCTGGAAATACAAATACATACACAGCATCAAAGCATTTCACAGAATTGTTAACAAAAATTTTGAAAAATGAAAAATGCTGGTTGTTTTCTCAAATATTTTTTCTCTGTAATTCCCTTTTTGTAATTTTCTTGTGTTTTTCCTGTTTTCTGTTGTTCTTTTGGTTCCCTTTGGTTCAGGCCCCTTTTTCTGTATGGCCCTTTTTGTTTTGCCCTCTATTTTTTTATTTGCTCTGAAAAGAAGCGTTTCTCTTCAGTAAGAAAATGTCAATGACAGACTACTAGGAACATCATTTGAGCATAAGCAAACAGTGAGATAATCTAACTTATGTGATTAGACTACAGAAGGACCGCAAGTTAAGAAAAGCTTCATGCCGTGTTTAACATCTTAAATTTGAATATGATTGTTACTTCACCACACGAAGGTTTTAGCATGTAGTTAGCTCATTCCTGCTAGTTTCATGCTAAAGGAGTGAAATTTTGGAGTTGAGTATAGATGATCCTGTTCGACTTGATTTATGTCCATGGAATTTTTTAAATGATCTGAATTGAGTTTCTCCAGAGTACATTATTCTCTGATCTTGTGTTTCCTCTGTTCTTGTAGTTGGTAAATTTTATCTTCAGTTTCTACCTCCTAAAAACTCCCAATGAGTGCTCAGATTTGATTAGTAATGTAGTTACATTACTAATTTCCTGATTGTCTTTATCTAAAAATTCACGGTCCCTTCGGGGACATCCAATAAAAAATTCACGATTAAAGAAAACTGGAATTTCTGATTACTGCTCTCATGTTCAGCTTTGTAGTGTCATTGCAACGATGGAAATTGATGTATTCTTCTTTATTGTTGTTATTGGGAGGGGATGAATGAAATTGTTAATTGAATCGTTACCTTCTTGCTTTGCAGACTGTTCATGAGGGACGCATCTATCAACTCAAGTTATTCTGTGGACAGGATTATCCTGATAATCCTCCAAACGTTAGATTTCAAACTCGGATTAATATGACCTGTGTCAATCCAGAAACTGGGGTGGTATGTGATGATTTTTTGAAGCACTTTTACCATAAATGTGACTGAAAATAAATTGACGGCTCATCTGTAGGTGGAACCAAGCCTTTTCCCCATGCTTGCTAATTGGCAAAGGGAGCATACAATGGAGGACATATTAATGCAATTGAAGAAAGAAATGACTTCTCCACAGAACAGGAGATTAAGTCAGCCTTCTGAAGGTGAGTTTATTCATCTCTCATTGTGGAGAGCACATCCCTCTCGTTAGAATATAAAGCATATTGAATATATTTGCATGCTTCTTTTATGATAAACTCTCTCTCATTAAAAAAAAATGTATTTGAGGAAAGATGAGATATATTATGTCCAGTCAAGAAGATTACAATTCACAACTAGTAAGGCTATCCACTCAAGGAGGTTCCAAGATGACTCTCCAGTTGTCTAAAACAAAAAAGATCTGTATGCAAAAATGATTGGAGCTAGTACGCGAATTTGGTGCTAGAAATCTAGCTATATCCCAAAACATCTAGGTGTCCTCAAAACTGTTTGAATATTTTTTGCTCACGTCTCCTACAAGATCACTTTCATGGCATTATCTTTTAACCATCAATTTAATCTTTGAAATTATGGCTTCAAAGGAGTTGGAAAACAGCTTATCTGCCATTCTGAGGAAACACCATTGCAATCCAGAGCTATCCAGCAATCTAAAGGTGGATGAATTGGAAGTGCAAGAAAAGAAATTGTGGTCTTGGTCTCCCAAACATCTATGAATAATGCATCAGTTAACAGATACGGCAAAGCTCGGGAACTCCATCCTAATTCTGTCTCTAGTGTAAATATTCCCGGGCACCTAAGTGAAAAGGAGAACTTGTCTTTCTTAGGGGTTTTGACATTCAGTTTGCAATTGAGAGGGTCTGGTTCATTTATGTTGTCAGGATCAAATGTGAAAGCTGATTGA

mRNA sequence

ATGGGTGACGAGGCCGCGAAGGTAGTTGTTCCTCGAAGCTTCAGATTACTGGAAGAACTTGAAAGAGGTGAAAAAGGAATCGGGGATGGAACTGTGAGTTATGGAATGGATGATGCTGATGATATCTATATGGCGTCTTGGACAGGAACTATTATTGGGCCACCTAACACTGTTCATGAGGGACGCATCTATCAACTCAAGTTATTCTGTGGACAGGATTATCCTGATAATCCTCCAAACGTTAGATTTCAAACTCGGATTAATATGACCTGTGTCAATCCAGAAACTGGGGTGGTGGAACCAAGCCTTTTCCCCATGCTTGCTAATTGGCAAAGGGAGCATACAATGGAGGACATATTAATGCAATTGAAGAAAGAAATGACTTCTCCACAGAACAGGAGATTAAGTCAGCCTTCTGAAGTTAACAGATACGGCAAAGCTCGGGAACTCCATCCTAATTCTGTCTCTAGTGTAAATATTCCCGGGCACCTAAGTGAAAAGGAGAACTTGTCTTTCTTAGGGGTTTTGACATTCAGTTTGCAATTGAGAGGGTCTGGTTCATTTATGTTGTCAGGATCAAATGTGAAAGCTGATTGA

Coding sequence (CDS)

ATGGGTGACGAGGCCGCGAAGGTAGTTGTTCCTCGAAGCTTCAGATTACTGGAAGAACTTGAAAGAGGTGAAAAAGGAATCGGGGATGGAACTGTGAGTTATGGAATGGATGATGCTGATGATATCTATATGGCGTCTTGGACAGGAACTATTATTGGGCCACCTAACACTGTTCATGAGGGACGCATCTATCAACTCAAGTTATTCTGTGGACAGGATTATCCTGATAATCCTCCAAACGTTAGATTTCAAACTCGGATTAATATGACCTGTGTCAATCCAGAAACTGGGGTGGTGGAACCAAGCCTTTTCCCCATGCTTGCTAATTGGCAAAGGGAGCATACAATGGAGGACATATTAATGCAATTGAAGAAAGAAATGACTTCTCCACAGAACAGGAGATTAAGTCAGCCTTCTGAAGTTAACAGATACGGCAAAGCTCGGGAACTCCATCCTAATTCTGTCTCTAGTGTAAATATTCCCGGGCACCTAAGTGAAAAGGAGAACTTGTCTTTCTTAGGGGTTTTGACATTCAGTTTGCAATTGAGAGGGTCTGGTTCATTTATGTTGTCAGGATCAAATGTGAAAGCTGATTGA

Protein sequence

MGDEAAKVVVPRSFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHEGRIYQLKLFCGQDYPDNPPNVRFQTRINMTCVNPETGVVEPSLFPMLANWQREHTMEDILMQLKKEMTSPQNRRLSQPSEVNRYGKARELHPNSVSSVNIPGHLSEKENLSFLGVLTFSLQLRGSGSFMLSGSNVKAD

Homology

[Close]

BLAST of HG10009561 vs. NCBI nr
Match: XP_016903717.1 (PREDICTED: uncharacterized protein LOC103483035 [Cucumis melo])

HSP 1 Score: 296.6 bits (758), Expect = 1.6e-76
Identity = 140/146 (95.89%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 1   MGDEAAKVVVPRSFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 60
           MGDEAAKVVVPR+FRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE
Sbjct: 565 MGDEAAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 624

Query: 61  GRIYQLKLFCGQDYPDNPPNVRFQTRINMTCVNPETGVVEPSLFPMLANWQREHTMEDIL 120
           GRIYQLKLFCGQDYPDNPPNVRFQTR+NMTCVNPETGVVEPSLFPMLANWQREHTMEDIL
Sbjct: 625 GRIYQLKLFCGQDYPDNPPNVRFQTRVNMTCVNPETGVVEPSLFPMLANWQREHTMEDIL 684

Query: 121 MQLKKEMTSPQNRRLSQPSEVNRYGK 147
           MQLKKEMTSPQNRRLSQPSE N  G+
Sbjct: 685 MQLKKEMTSPQNRRLSQPSEGNEDGR 710

[Close]

BLAST of HG10009561 vs. NCBI nr
Match: KAA0046368.1 (zinc finger protein VAR3 [Cucumis melo var. makuwa])

HSP 1 Score: 295.8 bits (756), Expect = 2.7e-76
Identity = 139/143 (97.20%), Postives = 142/143 (99.30%), Query Frame = 0


Query: 1   MGDEAAKVVVPRSFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 60
           MGDEAAKVVVPR+FRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE
Sbjct: 1   MGDEAAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 60

Query: 61  GRIYQLKLFCGQDYPDNPPNVRFQTRINMTCVNPETGVVEPSLFPMLANWQREHTMEDIL 120
           GRIYQLKLFCGQDYPDNPPNVRFQTR+NMTCVNPETGVVEPSLFPMLANWQREHTMEDIL
Sbjct: 61  GRIYQLKLFCGQDYPDNPPNVRFQTRVNMTCVNPETGVVEPSLFPMLANWQREHTMEDIL 120

Query: 121 MQLKKEMTSPQNRRLSQPSEVNR 144
           MQLKKEMTSPQNRRLSQPSEV +
Sbjct: 121 MQLKKEMTSPQNRRLSQPSEVKK 143

[Close]

BLAST of HG10009561 vs. NCBI nr
Match: XP_038874959.1 (uncharacterized protein LOC120067474 [Benincasa hispida])

HSP 1 Score: 294.3 bits (752), Expect = 8.0e-76
Identity = 139/146 (95.21%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MGDEAAKVVVPRSFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 60
           MGDEA KVVVPR+FRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE
Sbjct: 554 MGDEATKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 613

Query: 61  GRIYQLKLFCGQDYPDNPPNVRFQTRINMTCVNPETGVVEPSLFPMLANWQREHTMEDIL 120
           GRIYQLKLFCGQDYPDNPPNVRFQTRINMTCVNPETGVVEPSLFPMLANWQREHTMEDIL
Sbjct: 614 GRIYQLKLFCGQDYPDNPPNVRFQTRINMTCVNPETGVVEPSLFPMLANWQREHTMEDIL 673

Query: 121 MQLKKEMTSPQNRRLSQPSEVNRYGK 147
           MQLKKEMTSPQNRRL+QPSE N  G+
Sbjct: 674 MQLKKEMTSPQNRRLTQPSEGNEDGR 699

[Close]

BLAST of HG10009561 vs. NCBI nr
Match: KGN51442.1 (hypothetical protein Csa_008754 [Cucumis sativus])

HSP 1 Score: 293.9 bits (751), Expect = 1.0e-75
Identity = 140/146 (95.89%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MGDEAAKVVVPRSFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 60
           MGDEAAKVVVPR+FRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE
Sbjct: 1   MGDEAAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 60

Query: 61  GRIYQLKLFCGQDYPDNPPNVRFQTRINMTCVNPETGVVEPSLFPMLANWQREHTMEDIL 120
           GRIYQLKLFCGQDYPDNPPNVRFQTRINMTCVN ETGVVEPSLFPMLANWQREHTMEDIL
Sbjct: 61  GRIYQLKLFCGQDYPDNPPNVRFQTRINMTCVNSETGVVEPSLFPMLANWQREHTMEDIL 120

Query: 121 MQLKKEMTSPQNRRLSQPSEVNRYGK 147
           MQLKKEMTSPQNRRLSQPSE N  G+
Sbjct: 121 MQLKKEMTSPQNRRLSQPSEGNEDGR 146

[Close]

BLAST of HG10009561 vs. NCBI nr
Match: XP_022990021.1 (ubiquitin-conjugating enzyme E2 variant 1B-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 293.9 bits (751), Expect = 1.0e-75
Identity = 139/146 (95.21%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 1   MGDEAAKVVVPRSFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 60
           MGDEAAKVVVPR+FRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE
Sbjct: 1   MGDEAAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 60

Query: 61  GRIYQLKLFCGQDYPDNPPNVRFQTRINMTCVNPETGVVEPSLFPMLANWQREHTMEDIL 120
           GRIYQLKLFCGQDYPDNPP+VRFQTRINMTCVNPETGVVEPSLFPML+NWQREHTMEDIL
Sbjct: 61  GRIYQLKLFCGQDYPDNPPSVRFQTRINMTCVNPETGVVEPSLFPMLSNWQREHTMEDIL 120

Query: 121 MQLKKEMTSPQNRRLSQPSEVNRYGK 147
           MQLKKEMTSPQNRRLSQPSE N  G+
Sbjct: 121 MQLKKEMTSPQNRRLSQPSEGNEDGR 146

[Close]

BLAST of HG10009561 vs. ExPASy Swiss-Prot
Match: Q93YP0 (Ubiquitin-conjugating enzyme E2 variant 1A OS=Arabidopsis thaliana OX=3702 GN=UEV1A PE=1 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 5.0e-65
Identity = 114/147 (77.55%), Postives = 131/147 (89.12%), Query Frame = 0


Query: 1   MGDEAAKVVVPRSFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 60
           M  E AKVVVPR+FRLLEELERGEKGIGDGTVSYGMDDADDIYM SWTGTI+GPPNT +E
Sbjct: 1   MSSEEAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMQSWTGTILGPPNTAYE 60

Query: 61  GRIYQLKLFCGQDYPDNPPNVRFQTRINMTCVNPETGVVEPSLFPMLANWQREHTMEDIL 120
           G+I+QLKLFCG++YP++PP VRFQTRINM CVNPETGVVEPSLFPML NW+RE+TMEDIL
Sbjct: 61  GKIFQLKLFCGKEYPESPPTVRFQTRINMACVNPETGVVEPSLFPMLTNWRREYTMEDIL 120

Query: 121 MQLKKEMTSPQNRRLSQPSEVNRYGKA 148
           ++LKKEM +  NR+L+QP E N   +A
Sbjct: 121 VKLKKEMMTSHNRKLAQPPEGNEEARA 147

[Close]

BLAST of HG10009561 vs. ExPASy Swiss-Prot
Match: Q9CAB6 (Ubiquitin-conjugating enzyme E2 variant 1B OS=Arabidopsis thaliana OX=3702 GN=UEV1B PE=1 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.8e-62
Identity = 111/146 (76.03%), Postives = 128/146 (87.67%), Query Frame = 0


Query: 1   MGDEAAKVVVPRSFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 60
           MG E  KVVVPR+FRLLEELERGEKGIGDGTVSYGMDDADDI M SWTGTI+GP NT +E
Sbjct: 1   MGSEEEKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDILMQSWTGTILGPHNTAYE 60

Query: 61  GRIYQLKLFCGQDYPDNPPNVRFQTRINMTCVNPETGVVEPSLFPMLANWQREHTMEDIL 120
           G+I+QLKLFCG+DYP++PP VRFQ+RINM CVNPE GVV+PS FPML+NW+RE TMED+L
Sbjct: 61  GKIFQLKLFCGKDYPESPPTVRFQSRINMACVNPENGVVDPSHFPMLSNWRREFTMEDLL 120

Query: 121 MQLKKEMTSPQNRRLSQPSEVNRYGK 147
           +QLKKEM S QNR+L+QP E N  G+
Sbjct: 121 IQLKKEMMSSQNRKLAQPLEGNEEGR 146

[Close]

BLAST of HG10009561 vs. ExPASy Swiss-Prot
Match: Q9SVD7 (Ubiquitin-conjugating enzyme E2 variant 1D OS=Arabidopsis thaliana OX=3702 GN=UEV1D PE=1 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 1.9e-59
Identity = 106/140 (75.71%), Postives = 120/140 (85.71%), Query Frame = 0


Query: 1   MGDEAAKVVVPRSFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 60
           +G   + VVVPR+FRLLEELERGEKGIGDGTVSYGMDD DDIYM SWTGTIIGP NTVHE
Sbjct: 3   LGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHE 62

Query: 61  GRIYQLKLFCGQDYPDNPPNVRFQTRINMTCVNPETGVVEPSLFPMLANWQREHTMEDIL 120
           GRIYQLKLFC +DYP+ PP VRF +R+NM CVN ETGVV+P  F +LANWQRE+TMEDIL
Sbjct: 63  GRIYQLKLFCDKDYPEKPPTVRFHSRVNMACVNHETGVVDPKKFGLLANWQREYTMEDIL 122

Query: 121 MQLKKEMTSPQNRRLSQPSE 141
           +QLKKEM++  NR+L QP E
Sbjct: 123 VQLKKEMSTSHNRKLVQPPE 142

[Close]

BLAST of HG10009561 vs. ExPASy Swiss-Prot
Match: Q9SJ44 (Ubiquitin-conjugating enzyme E2 variant 1C OS=Arabidopsis thaliana OX=3702 GN=UEV1C PE=1 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 3.0e-57
Identity = 104/135 (77.04%), Postives = 116/135 (85.93%), Query Frame = 0


Query: 6   AKVVVPRSFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHEGRIYQ 65
           + VVVPR+FRLLEELERGEKGIGDGTVSYGMDD DDIYM SWTGTIIGP NTVHEGRIYQ
Sbjct: 7   SSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQ 66

Query: 66  LKLFCGQDYPDNPPNVRFQTRINMTCVNPETGVVEPSLFPMLANWQREHTMEDILMQLKK 125
           LKLFC +DYP+ PP VRF +RINMTCVN +TGVV+   F +LANWQR++TMEDIL QLKK
Sbjct: 67  LKLFCDKDYPEKPPTVRFHSRINMTCVNHDTGVVDSKKFGVLANWQRQYTMEDILTQLKK 126

Query: 126 EMTSPQNRRLSQPSE 141
           EM +  NR+L QP E
Sbjct: 127 EMAASHNRKLVQPPE 141

[Close]

BLAST of HG10009561 vs. ExPASy Swiss-Prot
Match: Q54D06 (Probable ubiquitin-conjugating enzyme E2 variant OS=Dictyostelium discoideum OX=44689 GN=ube2v PE=3 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 5.6e-40
Identity = 71/131 (54.20%), Postives = 99/131 (75.57%), Query Frame = 0


Query: 10  VPRSFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHEGRIYQLKLF 69
           +PR+F LLEELE GEK  GDGT+SYG++  DDI ++SW GTIIGP NT  + R Y LKL+
Sbjct: 4   IPRNFVLLEELESGEKSTGDGTISYGLESPDDILLSSWIGTIIGPQNTPFDNRFYSLKLY 63

Query: 70  CGQDYPDNPPNVRFQTRINMTCVNPETGVVEPSLFPMLANWQREHTMEDILMQLKKEMTS 129
           C +DYP+ PP VRF T+IN+ CVN + GVV+P   P+L+NW  ++ +++IL +L++EM+S
Sbjct: 64  CDKDYPNKPPTVRFTTKINIGCVNQQNGVVDPKNLPILSNWTSKNRIQNILSELRREMSS 123

Query: 130 PQNRRLSQPSE 141
             N++L QP E
Sbjct: 124 SSNKKLVQPPE 134

[Close]

BLAST of HG10009561 vs. ExPASy TrEMBL
Match: A0A1S4E671 (uncharacterized protein LOC103483035 OS=Cucumis melo OX=3656 GN=LOC103483035 PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 7.8e-77
Identity = 140/146 (95.89%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 1   MGDEAAKVVVPRSFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 60
           MGDEAAKVVVPR+FRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE
Sbjct: 565 MGDEAAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 624

Query: 61  GRIYQLKLFCGQDYPDNPPNVRFQTRINMTCVNPETGVVEPSLFPMLANWQREHTMEDIL 120
           GRIYQLKLFCGQDYPDNPPNVRFQTR+NMTCVNPETGVVEPSLFPMLANWQREHTMEDIL
Sbjct: 625 GRIYQLKLFCGQDYPDNPPNVRFQTRVNMTCVNPETGVVEPSLFPMLANWQREHTMEDIL 684

Query: 121 MQLKKEMTSPQNRRLSQPSEVNRYGK 147
           MQLKKEMTSPQNRRLSQPSE N  G+
Sbjct: 685 MQLKKEMTSPQNRRLSQPSEGNEDGR 710

[Close]

BLAST of HG10009561 vs. ExPASy TrEMBL
Match: A0A5A7TU26 (Zinc finger protein VAR3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G00820 PE=4 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 1.3e-76
Identity = 139/143 (97.20%), Postives = 142/143 (99.30%), Query Frame = 0


Query: 1   MGDEAAKVVVPRSFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 60
           MGDEAAKVVVPR+FRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE
Sbjct: 1   MGDEAAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 60

Query: 61  GRIYQLKLFCGQDYPDNPPNVRFQTRINMTCVNPETGVVEPSLFPMLANWQREHTMEDIL 120
           GRIYQLKLFCGQDYPDNPPNVRFQTR+NMTCVNPETGVVEPSLFPMLANWQREHTMEDIL
Sbjct: 61  GRIYQLKLFCGQDYPDNPPNVRFQTRVNMTCVNPETGVVEPSLFPMLANWQREHTMEDIL 120

Query: 121 MQLKKEMTSPQNRRLSQPSEVNR 144
           MQLKKEMTSPQNRRLSQPSEV +
Sbjct: 121 MQLKKEMTSPQNRRLSQPSEVKK 143

[Close]

BLAST of HG10009561 vs. ExPASy TrEMBL
Match: A0A6J1JLS9 (ubiquitin-conjugating enzyme E2 variant 1B-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111487038 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 5.0e-76
Identity = 139/146 (95.21%), Postives = 143/146 (97.95%), Query Frame = 0


Query: 1   MGDEAAKVVVPRSFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 60
           MGDEAAKVVVPR+FRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE
Sbjct: 1   MGDEAAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 60

Query: 61  GRIYQLKLFCGQDYPDNPPNVRFQTRINMTCVNPETGVVEPSLFPMLANWQREHTMEDIL 120
           GRIYQLKLFCGQDYPDNPP+VRFQTRINMTCVNPETGVVEPSLFPML+NWQREHTMEDIL
Sbjct: 61  GRIYQLKLFCGQDYPDNPPSVRFQTRINMTCVNPETGVVEPSLFPMLSNWQREHTMEDIL 120

Query: 121 MQLKKEMTSPQNRRLSQPSEVNRYGK 147
           MQLKKEMTSPQNRRLSQPSE N  G+
Sbjct: 121 MQLKKEMTSPQNRRLSQPSEGNEDGR 146

[Close]

BLAST of HG10009561 vs. ExPASy TrEMBL
Match: A0A5D3C2X2 (Zinc finger protein VAR3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3042G00070 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 5.0e-76
Identity = 138/140 (98.57%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MGDEAAKVVVPRSFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 60
           MGDEAAKVVVPR+FRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE
Sbjct: 1   MGDEAAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 60

Query: 61  GRIYQLKLFCGQDYPDNPPNVRFQTRINMTCVNPETGVVEPSLFPMLANWQREHTMEDIL 120
           GRIYQLKLFCGQDYPDNPPNVRFQTR+NMTCVNPETGVVEPSLFPMLANWQREHTMEDIL
Sbjct: 61  GRIYQLKLFCGQDYPDNPPNVRFQTRVNMTCVNPETGVVEPSLFPMLANWQREHTMEDIL 120

Query: 121 MQLKKEMTSPQNRRLSQPSE 141
           MQLKKEMTSPQNRRLSQPSE
Sbjct: 121 MQLKKEMTSPQNRRLSQPSE 140

[Close]

BLAST of HG10009561 vs. ExPASy TrEMBL
Match: A0A0A0KSP5 (UBC core domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G547590 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 5.0e-76
Identity = 140/146 (95.89%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MGDEAAKVVVPRSFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 60
           MGDEAAKVVVPR+FRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE
Sbjct: 1   MGDEAAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 60

Query: 61  GRIYQLKLFCGQDYPDNPPNVRFQTRINMTCVNPETGVVEPSLFPMLANWQREHTMEDIL 120
           GRIYQLKLFCGQDYPDNPPNVRFQTRINMTCVN ETGVVEPSLFPMLANWQREHTMEDIL
Sbjct: 61  GRIYQLKLFCGQDYPDNPPNVRFQTRINMTCVNSETGVVEPSLFPMLANWQREHTMEDIL 120

Query: 121 MQLKKEMTSPQNRRLSQPSEVNRYGK 147
           MQLKKEMTSPQNRRLSQPSE N  G+
Sbjct: 121 MQLKKEMTSPQNRRLSQPSEGNEDGR 146

[Close]

BLAST of HG10009561 vs. TAIR 10
Match: AT1G23260.1 (MMS ZWEI homologue 1 )

HSP 1 Score: 248.8 bits (634), Expect = 3.6e-66
Identity = 114/147 (77.55%), Postives = 131/147 (89.12%), Query Frame = 0


Query: 1   MGDEAAKVVVPRSFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 60
           M  E AKVVVPR+FRLLEELERGEKGIGDGTVSYGMDDADDIYM SWTGTI+GPPNT +E
Sbjct: 1   MSSEEAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMQSWTGTILGPPNTAYE 60

Query: 61  GRIYQLKLFCGQDYPDNPPNVRFQTRINMTCVNPETGVVEPSLFPMLANWQREHTMEDIL 120
           G+I+QLKLFCG++YP++PP VRFQTRINM CVNPETGVVEPSLFPML NW+RE+TMEDIL
Sbjct: 61  GKIFQLKLFCGKEYPESPPTVRFQTRINMACVNPETGVVEPSLFPMLTNWRREYTMEDIL 120

Query: 121 MQLKKEMTSPQNRRLSQPSEVNRYGKA 148
           ++LKKEM +  NR+L+QP E N   +A
Sbjct: 121 VKLKKEMMTSHNRKLAQPPEGNEEARA 147

[Close]

BLAST of HG10009561 vs. TAIR 10
Match: AT1G70660.1 (MMS ZWEI homologue 2 )

HSP 1 Score: 240.4 bits (612), Expect = 1.3e-63
Identity = 111/146 (76.03%), Postives = 128/146 (87.67%), Query Frame = 0


Query: 1   MGDEAAKVVVPRSFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 60
           MG E  KVVVPR+FRLLEELERGEKGIGDGTVSYGMDDADDI M SWTGTI+GP NT +E
Sbjct: 1   MGSEEEKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDILMQSWTGTILGPHNTAYE 60

Query: 61  GRIYQLKLFCGQDYPDNPPNVRFQTRINMTCVNPETGVVEPSLFPMLANWQREHTMEDIL 120
           G+I+QLKLFCG+DYP++PP VRFQ+RINM CVNPE GVV+PS FPML+NW+RE TMED+L
Sbjct: 61  GKIFQLKLFCGKDYPESPPTVRFQSRINMACVNPENGVVDPSHFPMLSNWRREFTMEDLL 120

Query: 121 MQLKKEMTSPQNRRLSQPSEVNRYGK 147
           +QLKKEM S QNR+L+QP E N  G+
Sbjct: 121 IQLKKEMMSSQNRKLAQPLEGNEEGR 146

[Close]

BLAST of HG10009561 vs. TAIR 10
Match: AT1G70660.2 (MMS ZWEI homologue 2 )

HSP 1 Score: 238.0 bits (606), Expect = 6.3e-63
Identity = 110/142 (77.46%), Postives = 126/142 (88.73%), Query Frame = 0


Query: 1   MGDEAAKVVVPRSFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 60
           MG E  KVVVPR+FRLLEELERGEKGIGDGTVSYGMDDADDI M SWTGTI+GP NT +E
Sbjct: 1   MGSEEEKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDILMQSWTGTILGPHNTAYE 60

Query: 61  GRIYQLKLFCGQDYPDNPPNVRFQTRINMTCVNPETGVVEPSLFPMLANWQREHTMEDIL 120
           G+I+QLKLFCG+DYP++PP VRFQ+RINM CVNPE GVV+PS FPML+NW+RE TMED+L
Sbjct: 61  GKIFQLKLFCGKDYPESPPTVRFQSRINMACVNPENGVVDPSHFPMLSNWRREFTMEDLL 120

Query: 121 MQLKKEMTSPQNRRLSQPSEVN 143
           +QLKKEM S QNR+L+QP E N
Sbjct: 121 IQLKKEMMSSQNRKLAQPLEGN 142

[Close]

BLAST of HG10009561 vs. TAIR 10
Match: AT1G70650.2 (Ran BP2/NZF zinc finger-like superfamily protein )

HSP 1 Score: 230.7 bits (587), Expect = 1.0e-60
Identity = 105/140 (75.00%), Postives = 125/140 (89.29%), Query Frame = 0


Query: 7   KVVVPRSFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHEGRIYQL 66
           +++VPR+FRLLEELERGEKGIGDGTVSYGMDDADDI M SWTGTI+GP NT +EG+I+QL
Sbjct: 443 ELLVPRNFRLLEELERGEKGIGDGTVSYGMDDADDILMQSWTGTILGPHNTAYEGKIFQL 502

Query: 67  KLFCGQDYPDNPPNVRFQTRINMTCVNPETGVVEPSLFPMLANWQREHTMEDILMQLKKE 126
           KLFCG+DYP++PP VRFQ+RINM CVNPE GVV+PS FPML+NW+RE TMED+L+QLKKE
Sbjct: 503 KLFCGKDYPESPPTVRFQSRINMACVNPENGVVDPSHFPMLSNWRREFTMEDLLIQLKKE 562

Query: 127 MTSPQNRRLSQPSEVNRYGK 147
           M S QNR+L+QP E N  G+
Sbjct: 563 MMSSQNRKLAQPLEGNEEGR 582

[Close]

BLAST of HG10009561 vs. TAIR 10
Match: AT3G52560.1 (ubiquitin E2 variant 1D-4 )

HSP 1 Score: 230.3 bits (586), Expect = 1.3e-60
Identity = 106/140 (75.71%), Postives = 120/140 (85.71%), Query Frame = 0


Query: 1   MGDEAAKVVVPRSFRLLEELERGEKGIGDGTVSYGMDDADDIYMASWTGTIIGPPNTVHE 60
           +G   + VVVPR+FRLLEELERGEKGIGDGTVSYGMDD DDIYM SWTGTIIGP NTVHE
Sbjct: 3   LGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHE 62

Query: 61  GRIYQLKLFCGQDYPDNPPNVRFQTRINMTCVNPETGVVEPSLFPMLANWQREHTMEDIL 120
           GRIYQLKLFC +DYP+ PP VRF +R+NM CVN ETGVV+P  F +LANWQRE+TMEDIL
Sbjct: 63  GRIYQLKLFCDKDYPEKPPTVRFHSRVNMACVNHETGVVDPKKFGLLANWQREYTMEDIL 122

Query: 121 MQLKKEMTSPQNRRLSQPSE 141
           +QLKKEM++  NR+L QP E
Sbjct: 123 VQLKKEMSTSHNRKLVQPPE 142

The following BLAST results are available for this feature:

BLAST of HG10009561 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016903717.1	1.6e-76	95.89	PREDICTED: uncharacterized protein LOC103483035 [Cucumis melo]	[more]
KAA0046368.1	2.7e-76	97.20	zinc finger protein VAR3 [Cucumis melo var. makuwa]	[more]
XP_038874959.1	8.0e-76	95.21	uncharacterized protein LOC120067474 [Benincasa hispida]	[more]
KGN51442.1	1.0e-75	95.89	hypothetical protein Csa_008754 [Cucumis sativus]	[more]
XP_022990021.1	1.0e-75	95.21	ubiquitin-conjugating enzyme E2 variant 1B-like isoform X2 [Cucurbita maxima]	[more]

BLAST of HG10009561 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93YP0	5.0e-65	77.55	Ubiquitin-conjugating enzyme E2 variant 1A OS=Arabidopsis thaliana OX=3702 GN=UE...	[more]
Q9CAB6	1.8e-62	76.03	Ubiquitin-conjugating enzyme E2 variant 1B OS=Arabidopsis thaliana OX=3702 GN=UE...	[more]
Q9SVD7	1.9e-59	75.71	Ubiquitin-conjugating enzyme E2 variant 1D OS=Arabidopsis thaliana OX=3702 GN=UE...	[more]
Q9SJ44	3.0e-57	77.04	Ubiquitin-conjugating enzyme E2 variant 1C OS=Arabidopsis thaliana OX=3702 GN=UE...	[more]
Q54D06	5.6e-40	54.20	Probable ubiquitin-conjugating enzyme E2 variant OS=Dictyostelium discoideum OX=...	[more]

BLAST of HG10009561 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E671	7.8e-77	95.89	uncharacterized protein LOC103483035 OS=Cucumis melo OX=3656 GN=LOC103483035 PE=...	[more]
A0A5A7TU26	1.3e-76	97.20	Zinc finger protein VAR3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A6J1JLS9	5.0e-76	95.21	ubiquitin-conjugating enzyme E2 variant 1B-like isoform X2 OS=Cucurbita maxima O...	[more]
A0A5D3C2X2	5.0e-76	98.57	Zinc finger protein VAR3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A0A0KSP5	5.0e-76	95.89	UBC core domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G547590 PE...	[more]

BLAST of HG10009561 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G23260.1	3.6e-66	77.55	MMS ZWEI homologue 1	[more]
AT1G70660.1	1.3e-63	76.03	MMS ZWEI homologue 2	[more]
AT1G70660.2	6.3e-63	77.46	MMS ZWEI homologue 2	[more]
AT1G70650.2	1.0e-60	75.00	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT3G52560.1	1.3e-60	75.71	ubiquitin E2 variant 1D-4	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SMART	SM00212	ubc_7	coord: 14..160 e-value: 3.3E-13 score: 59.9
None	No IPR available	PANTHER	PTHR24068:SF344	UBIQUITIN-CONJUGATING ENZYME E2 VARIANT 1A-LIKE	coord: 8..145
None	No IPR available	PANTHER	PTHR24068	UBIQUITIN-CONJUGATING ENZYME E2	coord: 8..145
IPR000608	Ubiquitin-conjugating enzyme E2	PFAM	PF00179	UQ_con	coord: 41..153 e-value: 8.0E-17 score: 61.2
IPR000608	Ubiquitin-conjugating enzyme E2	PROSITE	PS50127	UBC_2	coord: 11..164 score: 33.798794
IPR016135	Ubiquitin-conjugating enzyme/RWD-like	GENE3D	3.10.110.10	Ubiquitin Conjugating Enzyme	coord: 2..146 e-value: 2.1E-43 score: 149.4
IPR016135	Ubiquitin-conjugating enzyme/RWD-like	SUPERFAMILY	54495	UBC-like	coord: 9..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10009561.1	HG10009561.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006301	postreplication repair
biological_process	GO:0070534	protein K63-linked ubiquitination
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046872	metal ion binding