HG10009552 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10009552
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Dynein light chain
Location	Chr06: 7409096 .. 7411164 (+)
RNA-Seq Expression	HG10009552
Synteny	HG10009552

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTAGCGGAAATGGAGCTTGAGCGACGGAGCAAGTTTCTGAGTGGGCTTATTTTGAAGAAGAAGGCGGGGGAGCAGCAAGAGCAGCGTGATCATCTCAATGTTCGCGTTAGAGCCTCCGATATGCCGTTTCCTCTGCAGAATCGCGCTTTTAGTTGCGCTCGTGAACTGCTCGATTCGATGCCTGGGAAGCTCGATAGCCAACGTCTTGCTCTTGTCCTTAAAAAGGTTAGAAGAAGGAAAAAAAAAAATCTAACCTTGAACTAACTTTTGGTTCTGAAATGCATTTTCGTGGTTGCGACTTTCTGTGAATTGCTGCTTCGTCACCCAGTTTTTGTTTTGGATTTTGAGTTAATGAAAGTTTTTTTGGGTATGGTTATTGGCCTGCTTTGAGTATTGTCTGGAATGTGTTTGATGAAATGCCTCTTTGGTATGAGCTGAATTTATTTTCGGGATTTTATGTCTGAGATTTATGGGATCTCTACAAATTTAGGTAGAAAATTGATGGGTTGTGTATTTCATTGCACTTGCTTCTCTTTTGGGTTTTTACAACATTCGATTTCTGAATCATGAAAGTACTCTGCAGTTGAAGGGGTCTCTGAATTAATTAACTAGCTCTGTAAACTGTTCATGTTTTTCCTGATTTGATTACTTCCCAACTTTAGGATTAGCTTTTTAATTATAATCGTAGTTAGCAAATTAAATGTTCTTTATTGCTCTTGGGTCCTCCCTAGGCTTGTACTTCGGTAGAGAGGGGATGCCATGAACAAAAAGTTGTGGACATGGCAATTCCAGTGGGAATTTGTTGCCCACCATTAATTCCATCATAGCTGATAGCCATCCACTACTGACACTTGCAAGTTGCCTTCTGATTTTTCTCTGGTTCTTCAGAAAACTTGTCGGAACAAGGATTCTTAGCTGAATTTTCCCCTGAATTTGCCATTTTCTACTTCATATGTAGTTATGTCTCTGTGCCATGTGTTTTTATGTAGTCCTTCAAAGTATTAGCTTTATCTATAATGGCTGGTCCCCCATTCTCTACCCTCTCTTCCTAGCTAAGAAAAAGAAAAGCTTTTGAAAATTTGTTTTAAAAATAGTTTTCTGGTTTGAAAATTTTGATGGATTGATTGTAAAAAATATTGTTGTGTATATAGAAACCACTACTCAAACATTCAGAAGTTTAAGAAACGAGCAATGACCTTTTTTTTTTTTTTTTTTGATAAATATGCTATTTGTGATAACATACCTAACAAAATTCTTTTTTTTTTTTTGAACCTCTTTTGTTTACTTGTAATGATAGGCAAAGATAATATTTGGAACCCTTTTTTTGTGAAATATCCAAAGCTCTCACACCATTCTTGTGGAAAACATACCATAAGAAAACATAATCATTATAGTGGTTTGGCCAGAGCTTATATTCATGACAACCAAATAATTGTCTGAAACCATCAAGAGCTGCATATTCTTGTGCTTTGAACAAAATCCACTCATTGTTGAAGTTGAAACCTTTTTTGCTATGAGCTAGGCATTTTCCTCTAGATTAGAGTATATTTGAAAGGTTTATTGTTGTCTTAAATAAAAAGTGTAACAAACCAACCTTAGCATCATCACAAAATATTTTCAAGATAAACGAAACCAAGTAATTCGAGGAACTTGGACCTTCCTTTTCTTGAGATTACTCTAGACTAGACCAACTGAATCGATGTCTAACTTCTCCCCTCATCACCCTTTCAATACACTAACTAATTATTAATATACCCTTAATAACATTCCTATCATGGTAGAAAACCTTCTCTAATCGAATGAAGTTAAGTTTGATGGTGTAATGAGTTTGTAATGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAGGAATTTGATTCCTCCTATGGTCCGGCTTGGCATTGCATTGTGGGAACTAGTTTTGGGTCCTATGTAACACATTCTCTGGGTGGGTTCTTGTATTTTTCAATAGATAAAGTTTATATCCTTCTCTTCAAAACAGCAGTGGAGCCTCTATCTCGTGGAACATCGTTGAAAGATTGA

mRNA sequence

ATGGATGTAGCGGAAATGGAGCTTGAGCGACGGAGCAAGTTTCTGAGTGGGCTTATTTTGAAGAAGAAGGCGGGGGAGCAGCAAGAGCAGCGTGATCATCTCAATGTTCGCGTTAGAGCCTCCGATATGCCGTTTCCTCTGCAGAATCGCGCTTTTAGTTGCGCTCGTGAACTGCTCGATTCGATGCCTGGGAAGCTCGATAGCCAACGTCTTGCTCTTGTCCTTAAAAAGGAATTTGATTCCTCCTATGGTCCGGCTTGGCATTGCATTGTGGGAACTAGTTTTGGGTCCTATGTAACACATTCTCTGGGTGGGTTCTTGTATTTTTCAATAGATAAAGTTTATATCCTTCTCTTCAAAACAGCAGTGGAGCCTCTATCTCGTGGAACATCGTTGAAAGATTGA

Coding sequence (CDS)

ATGGATGTAGCGGAAATGGAGCTTGAGCGACGGAGCAAGTTTCTGAGTGGGCTTATTTTGAAGAAGAAGGCGGGGGAGCAGCAAGAGCAGCGTGATCATCTCAATGTTCGCGTTAGAGCCTCCGATATGCCGTTTCCTCTGCAGAATCGCGCTTTTAGTTGCGCTCGTGAACTGCTCGATTCGATGCCTGGGAAGCTCGATAGCCAACGTCTTGCTCTTGTCCTTAAAAAGGAATTTGATTCCTCCTATGGTCCGGCTTGGCATTGCATTGTGGGAACTAGTTTTGGGTCCTATGTAACACATTCTCTGGGTGGGTTCTTGTATTTTTCAATAGATAAAGTTTATATCCTTCTCTTCAAAACAGCAGTGGAGCCTCTATCTCGTGGAACATCGTTGAAAGATTGA

Protein sequence

MDVAEMELERRSKFLSGLILKKKAGEQQEQRDHLNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSQRLALVLKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLSRGTSLKD

Homology

[Close]

BLAST of HG10009552 vs. NCBI nr
Match: XP_038906759.1 (dynein light chain LC6, flagellar outer arm [Benincasa hispida])

HSP 1 Score: 259.2 bits (661), Expect = 1.9e-65
Identity = 130/134 (97.01%), Postives = 131/134 (97.76%), Query Frame = 0


Query: 1   MDVAEMELERRSKFLSGLILKKKAGEQQEQRDHLNVRVRASDMPFPLQNRAFSCARELLD 60
           MD AEMELERRSKFLSGLILKKKAGEQQEQRD LNVRVRASDMPFPLQNRAFSCARELLD
Sbjct: 1   MDGAEMELERRSKFLSGLILKKKAGEQQEQRDRLNVRVRASDMPFPLQNRAFSCARELLD 60

Query: 61  SMPGKLDSQRLALVLKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
           SMPGKLDS+RLAL LKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK
Sbjct: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120

Query: 121 TAVEPLSRGTSLKD 135
           TAVEPLSRGTSLKD
Sbjct: 121 TAVEPLSRGTSLKD 134

[Close]

BLAST of HG10009552 vs. NCBI nr
Match: XP_004150121.1 (dynein light chain 1, cytoplasmic [Cucumis sativus] >XP_008467114.1 PREDICTED: dynein light chain 1, cytoplasmic [Cucumis melo] >KGN51478.1 hypothetical protein Csa_008341 [Cucumis sativus])

HSP 1 Score: 253.1 bits (645), Expect = 1.4e-63
Identity = 127/134 (94.78%), Postives = 129/134 (96.27%), Query Frame = 0


Query: 1   MDVAEMELERRSKFLSGLILKKKAGEQQEQRDHLNVRVRASDMPFPLQNRAFSCARELLD 60
           MD AEMELERRSKFL+GLILKKKAGEQQEQRD LNVRVRASDM FPLQNRAFSCARELLD
Sbjct: 1   MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLD 60

Query: 61  SMPGKLDSQRLALVLKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
           SMPGKLDS+RLAL LKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK
Sbjct: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120

Query: 121 TAVEPLSRGTSLKD 135
           TAVEPLSRG SLKD
Sbjct: 121 TAVEPLSRGASLKD 134

[Close]

BLAST of HG10009552 vs. NCBI nr
Match: XP_023551552.1 (dynein light chain LC6, flagellar outer arm [Cucurbita pepo subsp. pepo])

HSP 1 Score: 250.4 bits (638), Expect = 8.9e-63
Identity = 125/134 (93.28%), Postives = 128/134 (95.52%), Query Frame = 0


Query: 1   MDVAEMELERRSKFLSGLILKKKAGEQQEQRDHLNVRVRASDMPFPLQNRAFSCARELLD 60
           M+ AEMELERRSKFL+GLILKKKAGE QE RD LNVRVRASDMPFPLQNRAFSCARELLD
Sbjct: 1   MEGAEMELERRSKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLD 60

Query: 61  SMPGKLDSQRLALVLKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
           SMPGKLDS+RLAL LKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK
Sbjct: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120

Query: 121 TAVEPLSRGTSLKD 135
           TAVEPLSRG SLKD
Sbjct: 121 TAVEPLSRGKSLKD 134

[Close]

BLAST of HG10009552 vs. NCBI nr
Match: XP_022973572.1 (dynein light chain LC6, flagellar outer arm [Cucurbita maxima])

HSP 1 Score: 250.0 bits (637), Expect = 1.2e-62
Identity = 124/134 (92.54%), Postives = 128/134 (95.52%), Query Frame = 0


Query: 1   MDVAEMELERRSKFLSGLILKKKAGEQQEQRDHLNVRVRASDMPFPLQNRAFSCARELLD 60
           M+ AEMELERRSKFL+GLILKKKAGE QE RD LN+RVRASDMPFPLQNRAFSCARELLD
Sbjct: 1   MEGAEMELERRSKFLNGLILKKKAGEHQEHRDRLNIRVRASDMPFPLQNRAFSCARELLD 60

Query: 61  SMPGKLDSQRLALVLKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
           SMPGKLDS+RLAL LKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK
Sbjct: 61  SMPGKLDSKRLALTLKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120

Query: 121 TAVEPLSRGTSLKD 135
           TAVEPLSRG SLKD
Sbjct: 121 TAVEPLSRGKSLKD 134

[Close]

BLAST of HG10009552 vs. NCBI nr
Match: XP_022939677.1 (dynein light chain LC6, flagellar outer arm [Cucurbita moschata] >KAG6579264.1 hypothetical protein SDJN03_23712, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016780.1 hypothetical protein SDJN02_21890 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 249.2 bits (635), Expect = 2.0e-62
Identity = 124/134 (92.54%), Postives = 128/134 (95.52%), Query Frame = 0


Query: 1   MDVAEMELERRSKFLSGLILKKKAGEQQEQRDHLNVRVRASDMPFPLQNRAFSCARELLD 60
           M+ AEMELERR+KFL+GLILKKKAGE QE RD LNVRVRASDMPFPLQNRAFSCARELLD
Sbjct: 1   MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLD 60

Query: 61  SMPGKLDSQRLALVLKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
           SMPGKLDS+RLAL LKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK
Sbjct: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120

Query: 121 TAVEPLSRGTSLKD 135
           TAVEPLSRG SLKD
Sbjct: 121 TAVEPLSRGKSLKD 134

[Close]

BLAST of HG10009552 vs. ExPASy Swiss-Prot
Match: O02414 (Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=1043166 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 9.4e-15
Identity = 38/84 (45.24%), Postives = 53/84 (63.10%), Query Frame = 0


Query: 38  VRASDMPFPLQNRAFSCARELLDSMPGKLDSQRLALVLKKEFDSSYGPAWHCIVGTSFGS 97
           ++ +DMP  +Q  A  CA + L+    + D   +A  +KKEFD  Y P WHCIVG +FGS
Sbjct: 8   IKNADMPEDMQQDAVDCATQALEKFNIEKD---IAAYIKKEFDKKYNPTWHCIVGRNFGS 67

Query: 98  YVTHSLGGFLYFSIDKVYILLFKT 122
           YVTH    F+YF + +V +LLFK+
Sbjct: 68  YVTHETKHFIYFYLGQVAVLLFKS 88

[Close]

BLAST of HG10009552 vs. ExPASy Swiss-Prot
Match: Q86A88 (Dynein light chain, cytoplasmic OS=Dictyostelium discoideum OX=44689 GN=dlcB PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.2e-14
Identity = 38/85 (44.71%), Postives = 54/85 (63.53%), Query Frame = 0


Query: 36  VRVRASDMPFPLQNRAFSCARELLDSMPGKLDSQRLALVLKKEFDSSYGPAWHCIVGTSF 95
           + V+ +DMP  +Q  A  C  +  +    + D   +A+++KKEFD  Y P WHCIVG SF
Sbjct: 8   INVKNADMPDFMQQDATECTIKAFEETNIERD---IAMIIKKEFDKKYSPTWHCIVGKSF 67

Query: 96  GSYVTHSLGGFLYFSIDKVYILLFK 121
           GS+VTH    F+YF+I+K  +LLFK
Sbjct: 68  GSFVTHETKNFIYFNINKHSVLLFK 89

[Close]

BLAST of HG10009552 vs. ExPASy Swiss-Prot
Match: Q22799 (Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 6.1e-14
Identity = 38/84 (45.24%), Postives = 52/84 (61.90%), Query Frame = 0


Query: 38  VRASDMPFPLQNRAFSCARELLDSMPGKLDSQRLALVLKKEFDSSYGPAWHCIVGTSFGS 97
           ++ +DM   +Q  A  CA + L+    + D   +A  +KKEFD  Y P WHCIVG +FGS
Sbjct: 8   IKNADMSDDMQQDAIDCATQALEKYNIEKD---IAAYIKKEFDKKYNPTWHCIVGRNFGS 67

Query: 98  YVTHSLGGFLYFSIDKVYILLFKT 122
           YVTH    F+YF + +V ILLFK+
Sbjct: 68  YVTHETKHFIYFYLGQVAILLFKS 88

[Close]

BLAST of HG10009552 vs. ExPASy Swiss-Prot
Match: Q24117 (Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=ctp PE=1 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 8.0e-14
Identity = 38/84 (45.24%), Postives = 52/84 (61.90%), Query Frame = 0


Query: 38  VRASDMPFPLQNRAFSCARELLDSMPGKLDSQRLALVLKKEFDSSYGPAWHCIVGTSFGS 97
           ++ +DM   +Q  A  CA + L+    + D   +A  +KKEFD  Y P WHCIVG +FGS
Sbjct: 8   IKNADMSEEMQQDAVDCATQALEKYNIEKD---IAAYIKKEFDKKYNPTWHCIVGRNFGS 67

Query: 98  YVTHSLGGFLYFSIDKVYILLFKT 122
           YVTH    F+YF + +V ILLFK+
Sbjct: 68  YVTHETRHFIYFYLGQVAILLFKS 88

[Close]

BLAST of HG10009552 vs. ExPASy Swiss-Prot
Match: O96860 (Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=Cdlc2 PE=1 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 8.0e-14
Identity = 38/84 (45.24%), Postives = 52/84 (61.90%), Query Frame = 0


Query: 38  VRASDMPFPLQNRAFSCARELLDSMPGKLDSQRLALVLKKEFDSSYGPAWHCIVGTSFGS 97
           ++ +DM   +Q  A  CA + L+    + D   +A  +KKEFD  Y P WHCIVG +FGS
Sbjct: 8   IKNADMSEEMQQDAVDCATQALEKYNIEKD---IAAFIKKEFDKKYNPTWHCIVGRNFGS 67

Query: 98  YVTHSLGGFLYFSIDKVYILLFKT 122
           YVTH    F+YF + +V ILLFK+
Sbjct: 68  YVTHETRHFIYFYLGQVAILLFKS 88

[Close]

BLAST of HG10009552 vs. ExPASy TrEMBL
Match: A0A0A0KPF8 (Dynein light chain OS=Cucumis sativus OX=3659 GN=Csa_5G567290 PE=3 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 6.7e-64
Identity = 127/134 (94.78%), Postives = 129/134 (96.27%), Query Frame = 0


Query: 1   MDVAEMELERRSKFLSGLILKKKAGEQQEQRDHLNVRVRASDMPFPLQNRAFSCARELLD 60
           MD AEMELERRSKFL+GLILKKKAGEQQEQRD LNVRVRASDM FPLQNRAFSCARELLD
Sbjct: 1   MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLD 60

Query: 61  SMPGKLDSQRLALVLKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
           SMPGKLDS+RLAL LKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK
Sbjct: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120

Query: 121 TAVEPLSRGTSLKD 135
           TAVEPLSRG SLKD
Sbjct: 121 TAVEPLSRGASLKD 134

[Close]

BLAST of HG10009552 vs. ExPASy TrEMBL
Match: A0A1S3CSY6 (Dynein light chain OS=Cucumis melo OX=3656 GN=LOC103504546 PE=3 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 6.7e-64
Identity = 127/134 (94.78%), Postives = 129/134 (96.27%), Query Frame = 0


Query: 1   MDVAEMELERRSKFLSGLILKKKAGEQQEQRDHLNVRVRASDMPFPLQNRAFSCARELLD 60
           MD AEMELERRSKFL+GLILKKKAGEQQEQRD LNVRVRASDM FPLQNRAFSCARELLD
Sbjct: 1   MDGAEMELERRSKFLNGLILKKKAGEQQEQRDRLNVRVRASDMAFPLQNRAFSCARELLD 60

Query: 61  SMPGKLDSQRLALVLKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
           SMPGKLDS+RLAL LKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK
Sbjct: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120

Query: 121 TAVEPLSRGTSLKD 135
           TAVEPLSRG SLKD
Sbjct: 121 TAVEPLSRGASLKD 134

[Close]

BLAST of HG10009552 vs. ExPASy TrEMBL
Match: A0A6J1I7W2 (Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111472109 PE=3 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 5.7e-63
Identity = 124/134 (92.54%), Postives = 128/134 (95.52%), Query Frame = 0


Query: 1   MDVAEMELERRSKFLSGLILKKKAGEQQEQRDHLNVRVRASDMPFPLQNRAFSCARELLD 60
           M+ AEMELERRSKFL+GLILKKKAGE QE RD LN+RVRASDMPFPLQNRAFSCARELLD
Sbjct: 1   MEGAEMELERRSKFLNGLILKKKAGEHQEHRDRLNIRVRASDMPFPLQNRAFSCARELLD 60

Query: 61  SMPGKLDSQRLALVLKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
           SMPGKLDS+RLAL LKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK
Sbjct: 61  SMPGKLDSKRLALTLKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120

Query: 121 TAVEPLSRGTSLKD 135
           TAVEPLSRG SLKD
Sbjct: 121 TAVEPLSRGKSLKD 134

[Close]

BLAST of HG10009552 vs. ExPASy TrEMBL
Match: A0A6J1FHG9 (Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111445494 PE=3 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 9.6e-63
Identity = 124/134 (92.54%), Postives = 128/134 (95.52%), Query Frame = 0


Query: 1   MDVAEMELERRSKFLSGLILKKKAGEQQEQRDHLNVRVRASDMPFPLQNRAFSCARELLD 60
           M+ AEMELERR+KFL+GLILKKKAGE QE RD LNVRVRASDMPFPLQNRAFSCARELLD
Sbjct: 1   MEGAEMELERRTKFLNGLILKKKAGEHQEHRDRLNVRVRASDMPFPLQNRAFSCARELLD 60

Query: 61  SMPGKLDSQRLALVLKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
           SMPGKLDS+RLAL LKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK
Sbjct: 61  SMPGKLDSKRLALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120

Query: 121 TAVEPLSRGTSLKD 135
           TAVEPLSRG SLKD
Sbjct: 121 TAVEPLSRGKSLKD 134

[Close]

BLAST of HG10009552 vs. ExPASy TrEMBL
Match: A0A6J1CWZ8 (Dynein light chain OS=Momordica charantia OX=3673 GN=LOC111015562 PE=3 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 2.8e-62
Identity = 123/134 (91.79%), Postives = 128/134 (95.52%), Query Frame = 0


Query: 1   MDVAEMELERRSKFLSGLILKKKAGEQQEQRDHLNVRVRASDMPFPLQNRAFSCARELLD 60
           M+ AEMELERRSKFL+GLI KKKA EQQE+RD LN+RVRASDMPFPLQNRAFSCARELLD
Sbjct: 1   MEGAEMELERRSKFLNGLIQKKKAVEQQEERDRLNIRVRASDMPFPLQNRAFSCARELLD 60

Query: 61  SMPGKLDSQRLALVLKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
           SMPGKLDS+R AL LKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK
Sbjct: 61  SMPGKLDSKRFALALKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120

Query: 121 TAVEPLSRGTSLKD 135
           TAVEPLSRGTSLKD
Sbjct: 121 TAVEPLSRGTSLKD 134

[Close]

BLAST of HG10009552 vs. TAIR 10
Match: AT1G23220.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 199.1 bits (505), Expect = 2.2e-51
Identity = 96/128 (75.00%), Postives = 111/128 (86.72%), Query Frame = 0


Query: 1   MDVAEMELERRSKFLSGLILKKKAGEQQEQRDHLNVRVRASDMPFPLQNRAFSCARELLD 60
           M+  E+ELERRSKFL+ LI KKKA EQQ+Q+D  NVRVRASDMP P QNRAFS +RE+L+
Sbjct: 1   MEGVELELERRSKFLNSLIQKKKAKEQQDQKDEFNVRVRASDMPLPQQNRAFSLSREILN 60

Query: 61  SMPGKLDSQRLALVLKKEFDSSYGPAWHCIVGTSFGSYVTHSLGGFLYFSIDKVYILLFK 120
           + PGK D++RLA  LKK+FDS+YGPAWHCIVGTSFGSYVTHS GGFLYF IDKVY+LLFK
Sbjct: 61  ATPGKADNKRLAHALKKDFDSAYGPAWHCIVGTSFGSYVTHSTGGFLYFQIDKVYVLLFK 120

Query: 121 TAVEPLSR 129
           TAVEPL +
Sbjct: 121 TAVEPLDQ 128

[Close]

BLAST of HG10009552 vs. TAIR 10
Match: AT5G20110.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 121.7 bits (304), Expect = 4.5e-28
Identity = 59/94 (62.77%), Postives = 71/94 (75.53%), Query Frame = 0


Query: 34  LNVRVRASDMPFPLQNRAFSCARELLDSMPGKLDSQRLALVLKKEFDSSYGPAWHCIVGT 93
           L VR+ A+DMP  +Q  AF CAR  LDS+  K  S+ +A  LKKEFD  YGPAWHCIVG+
Sbjct: 115 LTVRILAADMPGFMQAHAFRCARMTLDSLE-KFSSKHMAFNLKKEFDKGYGPAWHCIVGS 174

Query: 94  SFGSYVTHSLGGFLYFSIDKVYILLFKTAVEPLS 128
           SFGS+VTHS G F+YFS+DK+Y+LLFKT V P S
Sbjct: 175 SFGSFVTHSTGCFIYFSMDKLYVLLFKTKVRPAS 207

[Close]

BLAST of HG10009552 vs. TAIR 10
Match: AT1G52240.2 (RHO guanyl-nucleotide exchange factor 11 )

HSP 1 Score: 75.9 bits (185), Expect = 2.8e-14
Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = 0


Query: 38  VRASDMPFPLQNRAFSCARELLDSMPGKLDSQRLALVLKKEFDSSYGPAWHCIVGTSFGS 97
           V  SDMP  +Q +A + A + LD +    D + +A  +KKEFD  YG  W C+VG++FG 
Sbjct: 8   VEDSDMPVKMQMQAMAFASQALD-LFDVFDCKSIAGHIKKEFDERYGSGWQCVVGSNFGC 67

Query: 98  YVTHSLGGFLYFSIDKVYILLFKTAVEP 126
           + THS G F+YF ++ +  L+FK A  P
Sbjct: 68  FFTHSKGTFIYFQLETLKFLIFKGASTP 94

[Close]

BLAST of HG10009552 vs. TAIR 10
Match: AT3G16120.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 75.1 bits (183), Expect = 4.8e-14
Identity = 37/86 (43.02%), Postives = 52/86 (60.47%), Query Frame = 0


Query: 37  RVRASDMPFPLQNRAFSCARELLDSMPGKLDSQRLALVLKKEFDSSYGPAWHCIVGTSFG 96
           +V  +DMP  +Q +A   A + LD +    DS  +A  +KKEFD  YG  W C+VGT+FG
Sbjct: 7   KVEETDMPVKMQMQAMKIASQSLD-LFDVFDSISIAAHIKKEFDERYGSGWQCVVGTNFG 66

Query: 97  SYVTHSLGGFLYFSIDKVYILLFKTA 123
            + THS G F+YF +  +  L+FK A
Sbjct: 67  CFFTHSKGTFIYFHLGTLNFLIFKGA 91

[Close]

BLAST of HG10009552 vs. TAIR 10
Match: AT4G27360.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-13
Identity = 38/83 (45.78%), Postives = 52/83 (62.65%), Query Frame = 0


Query: 41  SDMPFPLQNRAFSCARELLDSMPGKLDSQRLALVLKKEFDSSYGPAWHCIVGTSFGSYVT 100
           +DM   ++  A S A + LD      +  ++A  +KKEFD SYG  W CIVGT FGS+VT
Sbjct: 11  TDMKQTMKEDALSLASKALDCF-DVTEPTQIARFIKKEFDRSYGSGWQCIVGTHFGSFVT 70

Query: 101 HSLGGFLYFSIDKVYILLFKTAV 124
           H  G F++FS+  + ILLFK +V
Sbjct: 71  HCSGCFIHFSVGSLTILLFKGSV 92

The following BLAST results are available for this feature:

BLAST of HG10009552 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906759.1	1.9e-65	97.01	dynein light chain LC6, flagellar outer arm [Benincasa hispida]	[more]
XP_004150121.1	1.4e-63	94.78	dynein light chain 1, cytoplasmic [Cucumis sativus] >XP_008467114.1 PREDICTED: d...	[more]
XP_023551552.1	8.9e-63	93.28	dynein light chain LC6, flagellar outer arm [Cucurbita pepo subsp. pepo]	[more]
XP_022973572.1	1.2e-62	92.54	dynein light chain LC6, flagellar outer arm [Cucurbita maxima]	[more]
XP_022939677.1	2.0e-62	92.54	dynein light chain LC6, flagellar outer arm [Cucurbita moschata] >KAG6579264.1 h...	[more]

BLAST of HG10009552 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O02414	9.4e-15	45.24	Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=10431...	[more]
Q86A88	1.2e-14	44.71	Dynein light chain, cytoplasmic OS=Dictyostelium discoideum OX=44689 GN=dlcB PE=...	[more]
Q22799	6.1e-14	45.24	Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans OX=6239 GN=dlc-1 PE=...	[more]
Q24117	8.0e-14	45.24	Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=ctp PE=1...	[more]
O96860	8.0e-14	45.24	Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster OX=7227 GN=Cdlc2 PE...	[more]

BLAST of HG10009552 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPF8	6.7e-64	94.78	Dynein light chain OS=Cucumis sativus OX=3659 GN=Csa_5G567290 PE=3 SV=1	[more]
A0A1S3CSY6	6.7e-64	94.78	Dynein light chain OS=Cucumis melo OX=3656 GN=LOC103504546 PE=3 SV=1	[more]
A0A6J1I7W2	5.7e-63	92.54	Dynein light chain OS=Cucurbita maxima OX=3661 GN=LOC111472109 PE=3 SV=1	[more]
A0A6J1FHG9	9.6e-63	92.54	Dynein light chain OS=Cucurbita moschata OX=3662 GN=LOC111445494 PE=3 SV=1	[more]
A0A6J1CWZ8	2.8e-62	91.79	Dynein light chain OS=Momordica charantia OX=3673 GN=LOC111015562 PE=3 SV=1	[more]

BLAST of HG10009552 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G23220.1	2.2e-51	75.00	Dynein light chain type 1 family protein	[more]
AT5G20110.1	4.5e-28	62.77	Dynein light chain type 1 family protein	[more]
AT1G52240.2	2.8e-14	42.05	RHO guanyl-nucleotide exchange factor 11	[more]
AT3G16120.1	4.8e-14	43.02	Dynein light chain type 1 family protein	[more]
AT4G27360.1	1.1e-13	45.78	Dynein light chain type 1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001372	Dynein light chain, type 1/2	SMART	SM01375	Dynein_light_2	coord: 31..121 e-value: 4.9E-40 score: 149.0
IPR001372	Dynein light chain, type 1/2	PFAM	PF01221	Dynein_light	coord: 36..121 e-value: 5.8E-29 score: 100.3
IPR001372	Dynein light chain, type 1/2	PANTHER	PTHR11886	DYNEIN LIGHT CHAIN	coord: 1..127
IPR037177	Dynein light chain superfamily	GENE3D	3.30.740.10	Protein Inhibitor Of Neuronal Nitric Oxide Synthase;	coord: 24..122 e-value: 9.5E-33 score: 114.1
IPR037177	Dynein light chain superfamily	SUPERFAMILY	54648	DLC	coord: 28..121
None	No IPR available	PANTHER	PTHR11886:SF39	DYNEIN LIGHT CHAIN	coord: 1..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10009552.1	HG10009552.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0030286	dynein complex
cellular_component	GO:0005874	microtubule
molecular_function	GO:0045505	dynein intermediate chain binding
molecular_function	GO:0051959	dynein light intermediate chain binding