HG10009485 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10009485
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Protein IDA-like
Location	Chr06: 6484595 .. 6484846 (+)
RNA-Seq Expression	HG10009485
Synteny	HG10009485

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCACCTTCAACAACTCCCTTCTCTTCATCTTCCTCCTCATTCTTCCCCTTCCTTTCACCTCCGCAAGGCCATTTCCGGCAACTACAACAATGGCGGCGCCGTCGCATAATACCCACCGCAATCCCACCACCACCGCCTTCCGATACGGCCATCAAATCTTCAGCTTCCTTCCCAAAGGCACTCCCATTCCGCCTTCCGCTCCTTCCAAGAGACACAACTCGCTCGTTGACTCGGTCCCACAAAATTGA

mRNA sequence

ATGGCCACCTTCAACAACTCCCTTCTCTTCATCTTCCTCCTCATTCTTCCCCTTCCTTTCACCTCCGCAAGGCCATTTCCGGCAACTACAACAATGGCGGCGCCGTCGCATAATACCCACCGCAATCCCACCACCACCGCCTTCCGATACGGCCATCAAATCTTCAGCTTCCTTCCCAAAGGCACTCCCATTCCGCCTTCCGCTCCTTCCAAGAGACACAACTCGCTCGTTGACTCGGTCCCACAAAATTGA

Coding sequence (CDS)

ATGGCCACCTTCAACAACTCCCTTCTCTTCATCTTCCTCCTCATTCTTCCCCTTCCTTTCACCTCCGCAAGGCCATTTCCGGCAACTACAACAATGGCGGCGCCGTCGCATAATACCCACCGCAATCCCACCACCACCGCCTTCCGATACGGCCATCAAATCTTCAGCTTCCTTCCCAAAGGCACTCCCATTCCGCCTTCCGCTCCTTCCAAGAGACACAACTCGCTCGTTGACTCGGTCCCACAAAATTGA

Protein sequence

MATFNNSLLFIFLLILPLPFTSARPFPATTTMAAPSHNTHRNPTTTAFRYGHQIFSFLPKGTPIPPSAPSKRHNSLVDSVPQN

Homology

[Close]

BLAST of HG10009485 vs. NCBI nr
Match: KGN51548.1 (hypothetical protein Csa_008377 [Cucumis sativus])

HSP 1 Score: 104.4 bits (259), Expect = 4.9e-19
Identity = 57/80 (71.25%), Postives = 64/80 (80.00%), Query Frame = 0


Query: 5  NNSLLFIFLLILPLP-FTSARPFPATTTMAAPSHNTHRNPTTTAFRYGHQIFSFLPKGTP 64
          ++S+ FI LLILPLP FT+ARPFPATT     SHNTH    TTAFR+ HQIFSFLPKG P
Sbjct: 3  SSSIFFILLLILPLPNFTTARPFPATTMTEPSSHNTH---LTTAFRFNHQIFSFLPKG-P 62

Query: 65 IPPSAPSKRHNSLVDSVPQN 84
          IPPSAPSKRHNSL++S P N
Sbjct: 63 IPPSAPSKRHNSLINSAPLN 78

[Close]

BLAST of HG10009485 vs. NCBI nr
Match: KAG6579701.1 (hypothetical protein SDJN03_24149, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 88.6 bits (218), Expect = 2.8e-14
Identity = 51/76 (67.11%), Postives = 56/76 (73.68%), Query Frame = 0


Query: 5   NNSLLFIFLLILPLPFTSARPFPATTTMAAPSHNTHRNPTTTAFRYGHQIFSFLPKGTPI 64
           N SLLF FLL L L F+SARP PA  TMA  S     N   TAFR+ HQ+FSFLPKGTPI
Sbjct: 53  NASLLFFFLLTLLLGFSSARPAPA--TMAGTSFFPAPN---TAFRFHHQVFSFLPKGTPI 112

Query: 65  PPSAPSKRHNSLVDSV 81
           PPSAPSKRHNS+VD +
Sbjct: 113 PPSAPSKRHNSVVDQI 123

[Close]

BLAST of HG10009485 vs. NCBI nr
Match: KAG6601760.1 (hypothetical protein SDJN03_06993, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 75.5 bits (184), Expect = 2.4e-10
Identity = 44/78 (56.41%), Postives = 52/78 (66.67%), Query Frame = 0


Query: 2  ATFNNSLLFIFLLILPLPFTSARPFPATTTMAAPSHNTHRNPTTTAFRYGHQIFSFLPKG 61
          A  N S+ F+ LLIL  PFTSARP PAT     P+HN    P   A ++  Q FSFLP+G
Sbjct: 4  ALSNTSISFLLLLILLPPFTSARPPPAT----MPTHNFLPTP-NAAIQFQRQFFSFLPRG 63

Query: 62 TPIPPSAPSKRHNSLVDS 80
           PIPPSAPSKRHNS++ S
Sbjct: 64 VPIPPSAPSKRHNSVLHS 76

[Close]

BLAST of HG10009485 vs. NCBI nr
Match: KAA0034518.1 (putative Membrane lipoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 68.6 bits (166), Expect = 3.0e-08
Identity = 44/80 (55.00%), Postives = 52/80 (65.00%), Query Frame = 0


Query: 5  NNSLLFIFLLILPLPFTSA-RPFPATTTMAAPSHNTHRNPTTTAFRYGHQIFSFLPKGTP 64
          N+  +FI LL+L   F+SA RP     TM  P   ++ N  TTAFRY  Q F FLPKG P
Sbjct: 23 NSIPIFILLLLLLSGFSSATRP---GGTMEFPD-MSNSNYKTTAFRYAGQTFGFLPKGVP 82

Query: 65 IPPSAPSKRHNSLVDSVPQN 84
          IPPS PS RHNS+VDS+P N
Sbjct: 83 IPPSGPSDRHNSVVDSLPPN 98

[Close]

BLAST of HG10009485 vs. NCBI nr
Match: TYK09072.1 (putative Membrane lipoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 68.6 bits (166), Expect = 3.0e-08
Identity = 44/80 (55.00%), Postives = 52/80 (65.00%), Query Frame = 0


Query: 5   NNSLLFIFLLILPLPFTSA-RPFPATTTMAAPSHNTHRNPTTTAFRYGHQIFSFLPKGTP 64
           N+  +FI LL+L   F+SA RP     TM  P   ++ N  TTAFRY  Q F FLPKG P
Sbjct: 27  NSIPIFILLLLLLSGFSSATRP---GGTMEFPD-MSNSNYKTTAFRYAGQTFGFLPKGVP 86

Query: 65  IPPSAPSKRHNSLVDSVPQN 84
           IPPS PS RHNS+VDS+P N
Sbjct: 87  IPPSGPSDRHNSVVDSLPPN 102

[Close]

BLAST of HG10009485 vs. ExPASy Swiss-Prot
Match: Q8LAD7 (Protein IDA OS=Arabidopsis thaliana OX=3702 GN=IDA PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 3.2e-05
Identity = 32/74 (43.24%), Postives = 39/74 (52.70%), Query Frame = 0


Query: 8  LLFIFLLILPLPFTSARPFPATTTMAAPSHNTHRNPTTTAFRYGHQIFSFLPKGTPIPPS 67
          L F+  L       +A    AT  M        +N     F+  H IF +LPKG PIPPS
Sbjct: 11 LCFVLFLAASSSCVAAARIGATMEM-------KKNIKRLTFKNSH-IFGYLPKGVPIPPS 70

Query: 68 APSKRHNSLVDSVP 82
          APSKRHNS V+S+P
Sbjct: 71 APSKRHNSFVNSLP 76

[Close]

BLAST of HG10009485 vs. ExPASy TrEMBL
Match: A0A0A0KPP8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G577390 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.4e-19
Identity = 57/80 (71.25%), Postives = 64/80 (80.00%), Query Frame = 0


Query: 5  NNSLLFIFLLILPLP-FTSARPFPATTTMAAPSHNTHRNPTTTAFRYGHQIFSFLPKGTP 64
          ++S+ FI LLILPLP FT+ARPFPATT     SHNTH    TTAFR+ HQIFSFLPKG P
Sbjct: 3  SSSIFFILLLILPLPNFTTARPFPATTMTEPSSHNTH---LTTAFRFNHQIFSFLPKG-P 62

Query: 65 IPPSAPSKRHNSLVDSVPQN 84
          IPPSAPSKRHNSL++S P N
Sbjct: 63 IPPSAPSKRHNSLINSAPLN 78

[Close]

BLAST of HG10009485 vs. ExPASy TrEMBL
Match: A0A5D3CCP4 (Putative Membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G00620 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.4e-08
Identity = 44/80 (55.00%), Postives = 52/80 (65.00%), Query Frame = 0


Query: 5   NNSLLFIFLLILPLPFTSA-RPFPATTTMAAPSHNTHRNPTTTAFRYGHQIFSFLPKGTP 64
           N+  +FI LL+L   F+SA RP     TM  P   ++ N  TTAFRY  Q F FLPKG P
Sbjct: 27  NSIPIFILLLLLLSGFSSATRP---GGTMEFPD-MSNSNYKTTAFRYAGQTFGFLPKGVP 86

Query: 65  IPPSAPSKRHNSLVDSVPQN 84
           IPPS PS RHNS+VDS+P N
Sbjct: 87  IPPSGPSDRHNSVVDSLPPN 102

[Close]

BLAST of HG10009485 vs. ExPASy TrEMBL
Match: A0A5A7SV51 (Putative Membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G005330 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.4e-08
Identity = 44/80 (55.00%), Postives = 52/80 (65.00%), Query Frame = 0


Query: 5  NNSLLFIFLLILPLPFTSA-RPFPATTTMAAPSHNTHRNPTTTAFRYGHQIFSFLPKGTP 64
          N+  +FI LL+L   F+SA RP     TM  P   ++ N  TTAFRY  Q F FLPKG P
Sbjct: 23 NSIPIFILLLLLLSGFSSATRP---GGTMEFPD-MSNSNYKTTAFRYAGQTFGFLPKGVP 82

Query: 65 IPPSAPSKRHNSLVDSVPQN 84
          IPPS PS RHNS+VDS+P N
Sbjct: 83 IPPSGPSDRHNSVVDSLPPN 98

[Close]

BLAST of HG10009485 vs. ExPASy TrEMBL
Match: A0A059BFA1 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_G02368 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.9e-08
Identity = 37/77 (48.05%), Postives = 48/77 (62.34%), Query Frame = 0


Query: 11 IFLLILPLPFTSARPFPATTT----MAAPSHNTHRNPTTTAFRYGHQIFSFLPKGTPIPP 70
          + LL+L    T+ARP P TTT    +  P H    +P  TAFR+   IFS+LPKG+ +PP
Sbjct: 13 LLLLLLAGTCTAARPGPTTTTTMLPLRVPPHGPRHHPHKTAFRHRGSIFSYLPKGSTVPP 72

Query: 71 SAPSKRHNSLVDSVPQN 84
          S PS RHNS ++S P N
Sbjct: 73 SGPSPRHNSELNSTPGN 89

[Close]

BLAST of HG10009485 vs. ExPASy TrEMBL
Match: A0A0A0KR07 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608230 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.2e-08
Identity = 38/76 (50.00%), Postives = 45/76 (59.21%), Query Frame = 0


Query: 8  LLFIFLLILPLPFTSARPFPATTTMAAPSHNTHRNPTTTAFRYGHQIFSFLPKGTPIPPS 67
          +  + LL+L L   S+   P  T      +    N   TAFRYG Q FSFLPKG PIPPS
Sbjct: 12 IFILLLLLLLLSGLSSATRPGKTMEFTEMNPDMSNSYKTAFRYGGQTFSFLPKGVPIPPS 71

Query: 68 APSKRHNSLVDSVPQN 84
           PS RHNS+VDS+P N
Sbjct: 72 GPSDRHNSVVDSLPPN 87

[Close]

BLAST of HG10009485 vs. TAIR 10
Match: AT1G68765.1 (Putative membrane lipoprotein )

HSP 1 Score: 48.9 bits (115), Expect = 2.3e-06
Identity = 32/74 (43.24%), Postives = 39/74 (52.70%), Query Frame = 0


Query: 8  LLFIFLLILPLPFTSARPFPATTTMAAPSHNTHRNPTTTAFRYGHQIFSFLPKGTPIPPS 67
          L F+  L       +A    AT  M        +N     F+  H IF +LPKG PIPPS
Sbjct: 11 LCFVLFLAASSSCVAAARIGATMEM-------KKNIKRLTFKNSH-IFGYLPKGVPIPPS 70

Query: 68 APSKRHNSLVDSVP 82
          APSKRHNS V+S+P
Sbjct: 71 APSKRHNSFVNSLP 76

The following BLAST results are available for this feature:

BLAST of HG10009485 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN51548.1	4.9e-19	71.25	hypothetical protein Csa_008377 [Cucumis sativus]	[more]
KAG6579701.1	2.8e-14	67.11	hypothetical protein SDJN03_24149, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6601760.1	2.4e-10	56.41	hypothetical protein SDJN03_06993, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0034518.1	3.0e-08	55.00	putative Membrane lipoprotein [Cucumis melo var. makuwa]	[more]
TYK09072.1	3.0e-08	55.00	putative Membrane lipoprotein [Cucumis melo var. makuwa]	[more]

BLAST of HG10009485 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LAD7	3.2e-05	43.24	Protein IDA OS=Arabidopsis thaliana OX=3702 GN=IDA PE=1 SV=1	[more]

BLAST of HG10009485 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPP8	2.4e-19	71.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G577390 PE=4 SV=1	[more]
A0A5D3CCP4	1.4e-08	55.00	Putative Membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7SV51	1.4e-08	55.00	Putative Membrane lipoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A059BFA1	1.9e-08	48.05	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_G02368 PE=4 SV...	[more]
A0A0A0KR07	4.2e-08	50.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G608230 PE=4 SV=1	[more]

BLAST of HG10009485 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68765.1	2.3e-06	43.24	Putative membrane lipoprotein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..83
None	No IPR available	PANTHER	PTHR33599:SF18	PROTEIN IDA	coord: 10..83
IPR039639	Protein IDA-like	PANTHER	PTHR33599	PROTEIN IDA-LIKE 5	coord: 10..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10009485.1	HG10009485.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010227	floral organ abscission
cellular_component	GO:0005615	extracellular space