HG10009449 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10009449
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	chromosome transmission fidelity protein 8 homolog
Location	Chr06: 6095445 .. 6097684 (+)
RNA-Seq Expression	HG10009449
Synteny	HG10009449

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGATTAAGTTGAAATGTAACTGTGGCGAAACCAAATGCTTGGAATGGGCCGTCGTTGAGTTGCAAGGCGTAGTTGAACCTCAATCCACCTTCCAAGATCGCCTTCAAAACCTCCAAATCGGCATTCTATGTCGCCCCTCCGCTCAGGTACTTTCTCATTTATCCATCATTTAACAGTTCCATCAATTTCTTCTTGTTTTCTATCTAATTCTCACCCCCTGTTGTAACCCTAGAATTGAATTCCCCGACAATACTACGGAATTGTTTACACTACTTAGCTTTTCATAAGATGAATTAGTTACTAGATCCATCGAATTGAAATGGATTTCTCCTTCGAATTCATCTTTGTCTTGTTGTACTGATTGTTGATTTAACCTAATTGATGATGATTTTGCAAAATTGGTCTCCAAGAGTGATTTCCGTTCCGTGAACTCTTTGTTTTTCATTGTTTGGATGGTTTGTAGCATTAAACTAGTTGCCTCTAATTCTTTCAATTGATTGAAGGGTTTTTCTTTTTTGGGTTTGTAGGAAGTGTATACTTTTACGGTAGGATACCATGAGCTGACAGGAAGCAAAGTGCCTCTGAAGAAGCCATTGTTGGTGTTGAAGAAAAAGAGGTGCGTGGATGAGGATCAGAATAACGATACCAAATCGGCTAATGCGGAGTTGGAAGTTATTGGTATAATCAGGCAGCGGATTCTGTTTAAGACTAGACCAAAGGCTCTCATATCTAGTAAGTTTCTAAAATTTTGCTAGATTTTGGAAATGTTACTTTGAAAGTAAGTTTATACAATAACGAATTTATTGGTAAAGAAAAATTCAGTTTCAGAAAATAGATCATACAAATCTATTATGAGCAATGTAAATTTTGCAAAATCAATGGAAGTTTCATTGTGTTTTGTTGCTAGATGAGAACATAAATAACAGGGAACAATCTGAATGTCAATAGATTTAGATTTAGAGTCTTAGACTTGTGTTTTGGGCCCTAAAACCCAAATAAAGTCACTTGCCAAAGGTTTTCTTGCTAATTTTTCTTTCTAAAGGACCTACACATAGAAAGATAAGAAGGATTTTTAGGCACTACAACTATAGGGTTTTGACAAAATAAGGGAAGCAATTCCACATCGAGAAAGTGCAAGGAAGTGATGAGCTCCAAGCACTATAAAAGGAGCCTGTGGCTATACCTTTGATTTCACATCTATCCTAATTTAAACCATTTAAGTTTGGTGTACTAACTCTAGTTAAATTCTTTTTTTATATTCTCTTGTATGAGAATGGAGCAAAGGGTGTGAATGGTACAAAACTTTGAGAGTTTTTGTATTTGAGATTTAAGAAGCACAAATACAAAATATAGATACGACAACACGTCATTTTTTTTAAAATTTAGGACACGGACACGACGAGGACACATTTATTAAAATATACATTTTAAAAAATATATTTCATTTTTTTACTAGAAGAAAATTCAAAGTAAATAGTCTGATACATTTATATGCTTAAAAAATTAATTTGATGTATTTTACACTCAAAATTTATTATTATTGTCATATATGTGTCTTTTCAATCTACCCAACAAGTGTTCTATGAATGTCTAACACATTTGTTGCACTAACAAGTGTCCAATAGTGTTGGAGTGTCCAAGTGCTCGACGTGTATCGAACACGGACACGCTAACTAAACTAAAGTGTCCATGTTTCTTAGATCGTGATGGAGGAGAGAATTTTGTGTGATTGTAATAATGTTTCATAAAGTGGGCTTCTTTTTGGTGTGTCGAGGGTTTTCTCCGGTCTTTTAGTGTTTCACTTAAATTTTTATGTTCTCTTTTTGTTGGTAATGCTCCATAACCTCATAGTTTATCTGTTTTGCAAATGTTTTTGTTGTTTCACTTTCTACTCTGGTTGATTTTCTTAATGAATTGAATATATTTTGTTAAAGTAATCTGGCCATCATTTCAGATCTGGCTTTGAATGTAAAAAGTTTTGTAAATTAACGGAATCTGTTCGATAGGTGGTACGACTGTTCTGAATTTTAAGAATAACATTAAACTTAATATCCCAAGCATGCTTTAAATTCTGTATAGAGATGTTTTAATTTCTGTATAGAGATGTTTTCTTTCATTTTTCTTCTTTGGTACAATGTGTAATCCCTTTTATGGTTTTTCCCCTTCAGAACCACAGCCATTGGTAAAGGAAAGATCCCGAGCTTCAGGAACTGTAGTGTCAGGCCAAACAACATGA

mRNA sequence

ATGCAGATTAAGTTGAAATGTAACTGTGGCGAAACCAAATGCTTGGAATGGGCCGTCGTTGAGTTGCAAGGCGTAGTTGAACCTCAATCCACCTTCCAAGATCGCCTTCAAAACCTCCAAATCGGCATTCTATGTCGCCCCTCCGCTCAGGAAGTGTATACTTTTACGGTAGGATACCATGAGCTGACAGGAAGCAAAGTGCCTCTGAAGAAGCCATTGTTGGTGTTGAAGAAAAAGAGGTGCGTGGATGAGGATCAGAATAACGATACCAAATCGGCTAATGCGGAGTTGGAAGTTATTGGTATAATCAGGCAGCGGATTCTGTTTAAGACTAGACCAAAGGCTCTCATATCTAAACCACAGCCATTGGTAAAGGAAAGATCCCGAGCTTCAGGAACTGTAGTGTCAGGCCAAACAACATGA

Coding sequence (CDS)

ATGCAGATTAAGTTGAAATGTAACTGTGGCGAAACCAAATGCTTGGAATGGGCCGTCGTTGAGTTGCAAGGCGTAGTTGAACCTCAATCCACCTTCCAAGATCGCCTTCAAAACCTCCAAATCGGCATTCTATGTCGCCCCTCCGCTCAGGAAGTGTATACTTTTACGGTAGGATACCATGAGCTGACAGGAAGCAAAGTGCCTCTGAAGAAGCCATTGTTGGTGTTGAAGAAAAAGAGGTGCGTGGATGAGGATCAGAATAACGATACCAAATCGGCTAATGCGGAGTTGGAAGTTATTGGTATAATCAGGCAGCGGATTCTGTTTAAGACTAGACCAAAGGCTCTCATATCTAAACCACAGCCATTGGTAAAGGAAAGATCCCGAGCTTCAGGAACTGTAGTGTCAGGCCAAACAACATGA

Protein sequence

MQIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLQIGILCRPSAQEVYTFTVGYHELTGSKVPLKKPLLVLKKKRCVDEDQNNDTKSANAELEVIGIIRQRILFKTRPKALISKPQPLVKERSRASGTVVSGQTT

Homology

[Close]

BLAST of HG10009449 vs. NCBI nr
Match: XP_038906846.1 (putative uncharacterized protein DDB_G0287975 [Benincasa hispida] >XP_038906847.1 putative uncharacterized protein DDB_G0287975 [Benincasa hispida] >XP_038906848.1 putative uncharacterized protein DDB_G0287975 [Benincasa hispida] >XP_038906849.1 putative uncharacterized protein DDB_G0287975 [Benincasa hispida] >XP_038906850.1 putative uncharacterized protein DDB_G0287975 [Benincasa hispida])

HSP 1 Score: 263.8 bits (673), Expect = 8.2e-67
Identity = 131/140 (93.57%), Postives = 136/140 (97.14%), Query Frame = 0


Query: 1   MQIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLQIGILCRPSAQEVYTFTVGYH 60
           MQIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNL+IGILCRPSAQEVYTFTVGYH
Sbjct: 1   MQIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLEIGILCRPSAQEVYTFTVGYH 60

Query: 61  ELTGSKVPLKKPLLVLKKKRCVDEDQNNDTKSANAELEVIGIIRQRILFKTRPKALISKP 120
           ELTGSKVPLKKPLLVLKK R VDEDQ++D KSANAELEVIGIIRQRILFKTRPKALISKP
Sbjct: 61  ELTGSKVPLKKPLLVLKKMRSVDEDQSSDAKSANAELEVIGIIRQRILFKTRPKALISKP 120

Query: 121 QPLVKERSRASGTVVSGQTT 141
           QPLVKERSRASG+ V+GQTT
Sbjct: 121 QPLVKERSRASGSAVTGQTT 140

[Close]

BLAST of HG10009449 vs. NCBI nr
Match: XP_004143632.1 (putative uncharacterized protein DDB_G0287975 isoform X1 [Cucumis sativus] >KGN50412.1 hypothetical protein Csa_000393 [Cucumis sativus])

HSP 1 Score: 259.6 bits (662), Expect = 1.5e-65
Identity = 128/140 (91.43%), Postives = 135/140 (96.43%), Query Frame = 0


Query: 1   MQIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLQIGILCRPSAQEVYTFTVGYH 60
           M+IKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNL+IGILCRPSAQEVYTFTVGYH
Sbjct: 1   MEIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLEIGILCRPSAQEVYTFTVGYH 60

Query: 61  ELTGSKVPLKKPLLVLKKKRCVDEDQNNDTKSANAELEVIGIIRQRILFKTRPKALISKP 120
           ELTGSK+ LKKPLLVLKK R VDEDQ++DTKS NAELEVIGIIRQRILFKTRPKALISKP
Sbjct: 61  ELTGSKISLKKPLLVLKKTRSVDEDQSSDTKSGNAELEVIGIIRQRILFKTRPKALISKP 120

Query: 121 QPLVKERSRASGTVVSGQTT 141
           QPLVKERSRASG+ V+GQTT
Sbjct: 121 QPLVKERSRASGSAVTGQTT 140

[Close]

BLAST of HG10009449 vs. NCBI nr
Match: KAA0055164.1 (hypothetical protein E6C27_scaffold231G00960 [Cucumis melo var. makuwa])

HSP 1 Score: 254.2 bits (648), Expect = 6.5e-64
Identity = 125/140 (89.29%), Postives = 133/140 (95.00%), Query Frame = 0


Query: 1   MQIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLQIGILCRPSAQEVYTFTVGYH 60
           MQIKLKCNCGETKCLEWA+VELQGVVEPQSTFQDR+QNL+IGILCRPSAQE+YTFTVGYH
Sbjct: 1   MQIKLKCNCGETKCLEWALVELQGVVEPQSTFQDRIQNLEIGILCRPSAQEMYTFTVGYH 60

Query: 61  ELTGSKVPLKKPLLVLKKKRCVDEDQNNDTKSANAELEVIGIIRQRILFKTRPKALISKP 120
           ELTGSKV LKKPLLVLKK R VDEDQ++D KS NAELEVIGIIRQRILFKTRPKALISKP
Sbjct: 61  ELTGSKVSLKKPLLVLKKTRSVDEDQSSDIKSGNAELEVIGIIRQRILFKTRPKALISKP 120

Query: 121 QPLVKERSRASGTVVSGQTT 141
           +PLVKERSRASG+ V GQTT
Sbjct: 121 EPLVKERSRASGSAVKGQTT 140

[Close]

BLAST of HG10009449 vs. NCBI nr
Match: XP_008467231.1 (PREDICTED: putative uncharacterized protein DDB_G0287975 [Cucumis melo] >TYK00299.1 hypothetical protein E5676_scaffold1728G00430 [Cucumis melo var. makuwa])

HSP 1 Score: 251.9 bits (642), Expect = 3.2e-63
Identity = 125/140 (89.29%), Postives = 132/140 (94.29%), Query Frame = 0


Query: 1   MQIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLQIGILCRPSAQEVYTFTVGYH 60
           MQIKLKCNCGETKCLEWAVVELQGVVE QSTFQDR+QNL+IGILCRPSAQE+YTFTVGYH
Sbjct: 1   MQIKLKCNCGETKCLEWAVVELQGVVEHQSTFQDRIQNLEIGILCRPSAQEMYTFTVGYH 60

Query: 61  ELTGSKVPLKKPLLVLKKKRCVDEDQNNDTKSANAELEVIGIIRQRILFKTRPKALISKP 120
           ELTGSKV LKKPLLVLKK R VDEDQ++D KS NAELEVIGIIRQRILFKTRPKALISKP
Sbjct: 61  ELTGSKVSLKKPLLVLKKTRSVDEDQSSDIKSGNAELEVIGIIRQRILFKTRPKALISKP 120

Query: 121 QPLVKERSRASGTVVSGQTT 141
           +PLVKERSRASG+ V GQTT
Sbjct: 121 EPLVKERSRASGSAVKGQTT 140

[Close]

BLAST of HG10009449 vs. NCBI nr
Match: XP_023551664.1 (putative uncharacterized protein DDB_G0287975 [Cucurbita pepo subsp. pepo] >KAG7017126.1 hypothetical protein SDJN02_22238 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 251.9 bits (642), Expect = 3.2e-63
Identity = 122/140 (87.14%), Postives = 132/140 (94.29%), Query Frame = 0


Query: 1   MQIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLQIGILCRPSAQEVYTFTVGYH 60
           MQIK+KCNCGETKCLEWAVVELQG+VE Q +F+DRLQ L+IG+LCRPSAQEVYTFTVGYH
Sbjct: 1   MQIKVKCNCGETKCLEWAVVELQGIVEAQPSFEDRLQTLEIGVLCRPSAQEVYTFTVGYH 60

Query: 61  ELTGSKVPLKKPLLVLKKKRCVDEDQNNDTKSANAELEVIGIIRQRILFKTRPKALISKP 120
           ELTGSKVPLKKPLLVLKKK+CVDEDQ+ DTKSA AELEVIGIIRQRILFKTRPKALISKP
Sbjct: 61  ELTGSKVPLKKPLLVLKKKKCVDEDQSGDTKSATAELEVIGIIRQRILFKTRPKALISKP 120

Query: 121 QPLVKERSRASGTVVSGQTT 141
           QP VKERSRASG+ V+GQ T
Sbjct: 121 QPSVKERSRASGSAVTGQAT 140

[Close]

BLAST of HG10009449 vs. ExPASy Swiss-Prot
Match: Q54JL4 (Putative uncharacterized protein DDB_G0287975 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0287975 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-10
Identity = 47/132 (35.61%), Postives = 66/132 (50.00%), Query Frame = 0


Query: 1   MQIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLQIGILC-RPSAQEVYTFTVGY 60
           MQI +K     T   EW +++LQG +E    +   L+N  +GIL  +P+ ++ ++F +G 
Sbjct: 1   MQIFIK---ESTNKKEWFILDLQGHLE----YTGDLKNETLGILTKKPNTKDDFSFQIGN 60

Query: 61  HELTGSKVPLKKPLLVLKK-------------KRCVDEDQNNDT-KSANAELEVIGIIRQ 118
             L G +VPLKKPLLV+KK             K  VD   N D  K    E  + GI   
Sbjct: 61  SVLVGKRVPLKKPLLVIKKSKLNNNNNSNNNNKMAVDNKDNKDNEKDKEVEYSIEGICND 120

[Close]

BLAST of HG10009449 vs. ExPASy Swiss-Prot
Match: P0CG13 (Chromosome transmission fidelity protein 8 homolog OS=Homo sapiens OX=9606 GN=CHTF8 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.4e-07
Identity = 34/103 (33.01%), Postives = 54/103 (52.43%), Query Frame = 0


Query: 16  EWAVVELQGVVEPQSTFQDRLQNLQIGILCRPSAQEVYTFTVGYHELTGSKVPLKKPLLV 75
           EW ++ELQG +E  + +   L    +G L   + + +    VG+H L G  + L+KP  V
Sbjct: 16  EWVLMELQGEIE--ARYSTGLAGNLLGDL-HYTTEGIPVLIVGHHILYGKIIHLEKPFAV 75

Query: 76  LKKKRCVDEDQNNDTKSANAELEVIGIIRQRILFKTRPKALIS 119
           L K    D+D +   +       V  +I+ +ILFKTRPK +I+
Sbjct: 76  LVKHTPGDQDCDELGRETGTRYLVTALIKDKILFKTRPKPIIT 115

[Close]

BLAST of HG10009449 vs. ExPASy Swiss-Prot
Match: P0CG15 (Chromosome transmission fidelity protein 8 homolog OS=Mus musculus OX=10090 GN=Chtf8 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.4e-07
Identity = 33/103 (32.04%), Postives = 54/103 (52.43%), Query Frame = 0


Query: 16  EWAVVELQGVVEPQSTFQDRLQNLQIGILCRPSAQEVYTFTVGYHELTGSKVPLKKPLLV 75
           EW ++ELQG +E  + +   L    +G L   + + +    VG+H L G  + L+KP  V
Sbjct: 16  EWVLMELQGEIE--ARYSTGLAGNLLGDL-HYTTEGIPVLIVGHHILYGKTIHLEKPFAV 75

Query: 76  LKKKRCVDEDQNNDTKSANAELEVIGIIRQRILFKTRPKALIS 119
           L K     +D +   +    +  V  +I+ +ILFKTRPK +I+
Sbjct: 76  LVKHTPGKQDCDEPGRGTGTQYLVTALIKNKILFKTRPKPIIT 115

[Close]

BLAST of HG10009449 vs. ExPASy Swiss-Prot
Match: P0C6T1 (Chromosome transmission fidelity protein 8 homolog OS=Rattus norvegicus OX=10116 GN=Chtf8 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.7e-06
Identity = 33/103 (32.04%), Postives = 54/103 (52.43%), Query Frame = 0


Query: 16  EWAVVELQGVVEPQSTFQDRLQNLQIGILCRPSAQEVYTFTVGYHELTGSKVPLKKPLLV 75
           EW ++ELQG +E  + +   L    +G L   + + +    VG+H L G  + L+KP  V
Sbjct: 16  EWVLMELQGEIE--ARYSTGLAGNLLGDL-HYTTEGIPVLIVGHHILYGKIIHLEKPFAV 75

Query: 76  LKKKRCVDEDQNNDTKSANAELEVIGIIRQRILFKTRPKALIS 119
           L K     +D +   +    +  V  +I+ +ILFKTRPK +I+
Sbjct: 76  LVKHTPGKQDCDELGRETGTQYLVTALIKNKILFKTRPKPIIT 115

[Close]

BLAST of HG10009449 vs. ExPASy Swiss-Prot
Match: P0CG11 (Chromosome transmission fidelity protein 8 homolog OS=Bos taurus OX=9913 GN=CHTF8 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 8.3e-06
Identity = 33/103 (32.04%), Postives = 54/103 (52.43%), Query Frame = 0


Query: 16  EWAVVELQGVVEPQSTFQDRLQNLQIGILCRPSAQEVYTFTVGYHELTGSKVPLKKPLLV 75
           EW ++ELQG +E + +    L    +G L   + + +    VG+H L G  + L+KP  V
Sbjct: 16  EWVLMELQGEIEARHS--TGLAGNLLGDL-HYTTEGIPVLIVGHHILYGKIIHLEKPFAV 75

Query: 76  LKKKRCVDEDQNNDTKSANAELEVIGIIRQRILFKTRPKALIS 119
           L K    ++D +     +     V  +I+ +ILFKTRPK +I+
Sbjct: 76  LVKHTPGEQDCDELGCESGTRYLVTALIKNKILFKTRPKPIIT 115

[Close]

BLAST of HG10009449 vs. ExPASy TrEMBL
Match: A0A0A0KPT4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G172910 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 7.5e-66
Identity = 128/140 (91.43%), Postives = 135/140 (96.43%), Query Frame = 0


Query: 1   MQIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLQIGILCRPSAQEVYTFTVGYH 60
           M+IKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNL+IGILCRPSAQEVYTFTVGYH
Sbjct: 1   MEIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLEIGILCRPSAQEVYTFTVGYH 60

Query: 61  ELTGSKVPLKKPLLVLKKKRCVDEDQNNDTKSANAELEVIGIIRQRILFKTRPKALISKP 120
           ELTGSK+ LKKPLLVLKK R VDEDQ++DTKS NAELEVIGIIRQRILFKTRPKALISKP
Sbjct: 61  ELTGSKISLKKPLLVLKKTRSVDEDQSSDTKSGNAELEVIGIIRQRILFKTRPKALISKP 120

Query: 121 QPLVKERSRASGTVVSGQTT 141
           QPLVKERSRASG+ V+GQTT
Sbjct: 121 QPLVKERSRASGSAVTGQTT 140

[Close]

BLAST of HG10009449 vs. ExPASy TrEMBL
Match: A0A5A7UJ36 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold231G00960 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 3.1e-64
Identity = 125/140 (89.29%), Postives = 133/140 (95.00%), Query Frame = 0


Query: 1   MQIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLQIGILCRPSAQEVYTFTVGYH 60
           MQIKLKCNCGETKCLEWA+VELQGVVEPQSTFQDR+QNL+IGILCRPSAQE+YTFTVGYH
Sbjct: 1   MQIKLKCNCGETKCLEWALVELQGVVEPQSTFQDRIQNLEIGILCRPSAQEMYTFTVGYH 60

Query: 61  ELTGSKVPLKKPLLVLKKKRCVDEDQNNDTKSANAELEVIGIIRQRILFKTRPKALISKP 120
           ELTGSKV LKKPLLVLKK R VDEDQ++D KS NAELEVIGIIRQRILFKTRPKALISKP
Sbjct: 61  ELTGSKVSLKKPLLVLKKTRSVDEDQSSDIKSGNAELEVIGIIRQRILFKTRPKALISKP 120

Query: 121 QPLVKERSRASGTVVSGQTT 141
           +PLVKERSRASG+ V GQTT
Sbjct: 121 EPLVKERSRASGSAVKGQTT 140

[Close]

BLAST of HG10009449 vs. ExPASy TrEMBL
Match: A0A5D3BQB7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1728G00430 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 1.6e-63
Identity = 125/140 (89.29%), Postives = 132/140 (94.29%), Query Frame = 0


Query: 1   MQIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLQIGILCRPSAQEVYTFTVGYH 60
           MQIKLKCNCGETKCLEWAVVELQGVVE QSTFQDR+QNL+IGILCRPSAQE+YTFTVGYH
Sbjct: 1   MQIKLKCNCGETKCLEWAVVELQGVVEHQSTFQDRIQNLEIGILCRPSAQEMYTFTVGYH 60

Query: 61  ELTGSKVPLKKPLLVLKKKRCVDEDQNNDTKSANAELEVIGIIRQRILFKTRPKALISKP 120
           ELTGSKV LKKPLLVLKK R VDEDQ++D KS NAELEVIGIIRQRILFKTRPKALISKP
Sbjct: 61  ELTGSKVSLKKPLLVLKKTRSVDEDQSSDIKSGNAELEVIGIIRQRILFKTRPKALISKP 120

Query: 121 QPLVKERSRASGTVVSGQTT 141
           +PLVKERSRASG+ V GQTT
Sbjct: 121 EPLVKERSRASGSAVKGQTT 140

[Close]

BLAST of HG10009449 vs. ExPASy TrEMBL
Match: A0A1S3CT18 (Uncharacterized protein OS=Cucumis melo OX=3656 GN=LOC103504632 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 1.6e-63
Identity = 125/140 (89.29%), Postives = 132/140 (94.29%), Query Frame = 0


Query: 1   MQIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLQIGILCRPSAQEVYTFTVGYH 60
           MQIKLKCNCGETKCLEWAVVELQGVVE QSTFQDR+QNL+IGILCRPSAQE+YTFTVGYH
Sbjct: 1   MQIKLKCNCGETKCLEWAVVELQGVVEHQSTFQDRIQNLEIGILCRPSAQEMYTFTVGYH 60

Query: 61  ELTGSKVPLKKPLLVLKKKRCVDEDQNNDTKSANAELEVIGIIRQRILFKTRPKALISKP 120
           ELTGSKV LKKPLLVLKK R VDEDQ++D KS NAELEVIGIIRQRILFKTRPKALISKP
Sbjct: 61  ELTGSKVSLKKPLLVLKKTRSVDEDQSSDIKSGNAELEVIGIIRQRILFKTRPKALISKP 120

Query: 121 QPLVKERSRASGTVVSGQTT 141
           +PLVKERSRASG+ V GQTT
Sbjct: 121 EPLVKERSRASGSAVKGQTT 140

[Close]

BLAST of HG10009449 vs. ExPASy TrEMBL
Match: A0A6J1I4S6 (Uncharacterized protein OS=Cucurbita maxima OX=3661 GN=LOC111469152 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 3.5e-63
Identity = 121/140 (86.43%), Postives = 131/140 (93.57%), Query Frame = 0


Query: 1   MQIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLQIGILCRPSAQEVYTFTVGYH 60
           MQIK+KCNCGETKCLEWAVVELQG+VE Q +F+DR Q L+IG+LCRPSAQEVYTFTVGYH
Sbjct: 1   MQIKVKCNCGETKCLEWAVVELQGIVEAQPSFEDRFQTLEIGVLCRPSAQEVYTFTVGYH 60

Query: 61  ELTGSKVPLKKPLLVLKKKRCVDEDQNNDTKSANAELEVIGIIRQRILFKTRPKALISKP 120
           ELTGSKVPLKKPLLVLKKK+CVDEDQ+ DTKSA AELEVIGIIRQR LFKTRPKALISKP
Sbjct: 61  ELTGSKVPLKKPLLVLKKKKCVDEDQSGDTKSATAELEVIGIIRQRFLFKTRPKALISKP 120

Query: 121 QPLVKERSRASGTVVSGQTT 141
           QP VKERSRASG+ V+GQTT
Sbjct: 121 QPSVKERSRASGSAVTGQTT 140

[Close]

BLAST of HG10009449 vs. TAIR 10
Match: AT5G52220.1 (CONTAINS InterPro DOMAIN/s: Chromosome transmission fidelity protein 8 (InterPro:IPR018607); Has 127 Blast hits to 127 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 70; Fungi - 17; Plants - 31; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). )

HSP 1 Score: 146.0 bits (367), Expect = 2.3e-35
Identity = 75/119 (63.03%), Postives = 89/119 (74.79%), Query Frame = 0


Query: 1   MQIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLQIGILCR-PSAQEVYTFTVGY 60
           M+I++KC CGE +C EWA+VELQGVVE Q++FQ  +QNL+IG LC   S+Q  YTFTVGY
Sbjct: 1   MEIRVKCRCGEEECSEWAIVELQGVVETQASFQGSIQNLEIGRLCHSDSSQGTYTFTVGY 60

Query: 61  HELTGSKVPLKKPLLVLKKKRCVDEDQNNDTKSANAELEVIGIIRQRILFKTRPKALIS 119
           HEL GSKV LKKPLLVLKK       Q ++      ELEV+GIIR +ILFKTRPK LIS
Sbjct: 61  HELVGSKVTLKKPLLVLKKL------QFDEVSGKATELEVVGIIRTKILFKTRPKPLIS 113

[Close]

BLAST of HG10009449 vs. TAIR 10
Match: AT5G52220.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chromosome transmission fidelity protein 8 (InterPro:IPR018607). )

HSP 1 Score: 146.0 bits (367), Expect = 2.3e-35
Identity = 75/119 (63.03%), Postives = 89/119 (74.79%), Query Frame = 0


Query: 1   MQIKLKCNCGETKCLEWAVVELQGVVEPQSTFQDRLQNLQIGILCR-PSAQEVYTFTVGY 60
           M+I++KC CGE +C EWA+VELQGVVE Q++FQ  +QNL+IG LC   S+Q  YTFTVGY
Sbjct: 1   MEIRVKCRCGEEECSEWAIVELQGVVETQASFQGSIQNLEIGRLCHSDSSQGTYTFTVGY 60

Query: 61  HELTGSKVPLKKPLLVLKKKRCVDEDQNNDTKSANAELEVIGIIRQRILFKTRPKALIS 119
           HEL GSKV LKKPLLVLKK       Q ++      ELEV+GIIR +ILFKTRPK LIS
Sbjct: 61  HELVGSKVTLKKPLLVLKKL------QFDEVSGKATELEVVGIIRTKILFKTRPKPLIS 113

The following BLAST results are available for this feature:

BLAST of HG10009449 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906846.1	8.2e-67	93.57	putative uncharacterized protein DDB_G0287975 [Benincasa hispida] >XP_038906847....	[more]
XP_004143632.1	1.5e-65	91.43	putative uncharacterized protein DDB_G0287975 isoform X1 [Cucumis sativus] >KGN5...	[more]
KAA0055164.1	6.5e-64	89.29	hypothetical protein E6C27_scaffold231G00960 [Cucumis melo var. makuwa]	[more]
XP_008467231.1	3.2e-63	89.29	PREDICTED: putative uncharacterized protein DDB_G0287975 [Cucumis melo] >TYK0029...	[more]
XP_023551664.1	3.2e-63	87.14	putative uncharacterized protein DDB_G0287975 [Cucurbita pepo subsp. pepo] >KAG7...	[more]

BLAST of HG10009449 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q54JL4	1.1e-10	35.61	Putative uncharacterized protein DDB_G0287975 OS=Dictyostelium discoideum OX=446...	[more]
P0CG13	4.4e-07	33.01	Chromosome transmission fidelity protein 8 homolog OS=Homo sapiens OX=9606 GN=CH...	[more]
P0CG15	4.4e-07	32.04	Chromosome transmission fidelity protein 8 homolog OS=Mus musculus OX=10090 GN=C...	[more]
P0C6T1	1.7e-06	32.04	Chromosome transmission fidelity protein 8 homolog OS=Rattus norvegicus OX=10116...	[more]
P0CG11	8.3e-06	32.04	Chromosome transmission fidelity protein 8 homolog OS=Bos taurus OX=9913 GN=CHTF...	[more]

BLAST of HG10009449 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPT4	7.5e-66	91.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G172910 PE=4 SV=1	[more]
A0A5A7UJ36	3.1e-64	89.29	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BQB7	1.6e-63	89.29	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CT18	1.6e-63	89.29	Uncharacterized protein OS=Cucumis melo OX=3656 GN=LOC103504632 PE=4 SV=1	[more]
A0A6J1I4S6	3.5e-63	86.43	Uncharacterized protein OS=Cucurbita maxima OX=3661 GN=LOC111469152 PE=4 SV=1	[more]

BLAST of HG10009449 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G52220.1	2.3e-35	63.03	CONTAINS InterPro DOMAIN/s: Chromosome transmission fidelity protein 8 (InterPro...	[more]
AT5G52220.2	2.3e-35	63.03	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018607	Chromosome transmission fidelity protein 8	PFAM	PF09696	Ctf8	coord: 47..114 e-value: 3.6E-10 score: 40.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 120..140
None	No IPR available	PANTHER	PTHR47475	CHROMOSOME TRANSMISSION FIDELITY PROTEIN 8	coord: 1..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10009449.1	HG10009449.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007064	mitotic sister chromatid cohesion
cellular_component	GO:0031390	Ctf18 RFC-like complex