HG10009419 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10009419
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	CDGSH iron-sulfur domain-containing protein NEET
Location	Chr06: 5705639 .. 5708709 (+)
RNA-Seq Expression	HG10009419
Synteny	HG10009419

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCCATTGTAGCCATTTCTGCTCCTTCTTCCCTATCAATAAGAAGCCATCCTCCTCATCGTAGTTTCAACGGCGGCGGACGACGTCGTATGGTGGTCGTAAGAGCTGAAGGCGGCGGCGAACCCATAAACCCTGCAATCAGGAAGACAGAAGACAAAGTGGTGGACTCTGTCCTCATTGCTGAACTTTCCAAGCCCCTCACTCCTTATTGCAGGTTCCTTTTCTTTTCTTTTCTTTCTCATTATTTCTCTTTTATTCCTCATGGTCTTGCTAGCACTTTCTCACAAGGTTAATTAAAATTAAAATGGAGAAGGAATTAGAAATTTTGCTTTCTTAAATGATCTTTTTTTCCCTCTAATCTTTCCTAATTTATTATTTATGTAATATAGGGACTAAATTAAAGAAATCTTTTAATCTCATGCCGCCTCCTTTTCATACATAGTAAGGAAAACAGGGTAATAATTAGATGTAACTTAAACTGCACCTAATATGTGCATCCCATTTTTTTACCTACAAAGAAAAAAGAAAAAAGAAAATATATTTTTTAAAAAAAATAGTTACCACGTGTTAGAATTTGATTGGGCAATCCCTTGTAATGCACAGAGGTTGGTGGGAGAACCCAAATTTTTTCCTAGAAAAAGTTAATTTTTTTATTAAAAAAATTATCACGGAGCATATGTTGATTGGTGCTATCTAGGCTGCACAATAGATGGGTGCAGTCAAGGGAGCACCCAAGTTTTTTCTAGAAAAAAAATTGCCACATGGCATATGTTGATCTTGGTGGGATTAAAACCCAAAACGCAGCGGAAACGTATCAGAACCGTATCTCAAAATTAATTTTAATAATTTTGAAATACTTTTACATTGGCAAAAAGACTTAAATTAATCTAGGTTAAGCAAAAAATTAGAGAATAAAACTCTTACGTGTTGTGTCACCACCACTTGGAGACCTTCCTATTGTCTGAATCTTGAGGAAGTTTGTGGAACCTTTTTGCACATGAAAAAAATACAGAACTCTTCTGGATATTTTTTTTTAGAGAACGCTGAGATTTTTTTTTTTTTTTTGTTGAGAGAATGGTTCACACCAAACAAAATTCTGTTTTTGCACTATATAAAGAAGCGAGAGAAAAATGGGAAACGTAGGTGTTATCCCACGTCTTAAGTAACTCCCCTACGTGGGAGTTACAACAAACTTAATTAATTAACTAAATCATAATTAATTAAATTAATAATTAATTAAATTAATAATTAATAATTAATTAAATCTAATTTAATTAATTAATTCATTTAAATCATATTTAAATGAACATCTCTCACATAACCTATAGTTTTAATTCAATTAATTTAATTAAATTAGATTAAATTAAATAACTAATTAATTCTCCAATTAATTAATTACCAAATTAAATATCAAATATTTAATTTTAACTTGCATTTGAATCAAATTCAAATACATTTCTCTCATAATCTATAGTTTTAATGTACATCTAATGCGCATTAATTTTAACCTATAGTTTTAATAAAATAATATTTGAACAATTTCAAATATTTAATTCTCTTACAAATTAACTTTGAATCATATCCAAAATTATATTATACTATAAAGTTTAATTTGTAAAATAAACTTATATTATAATGTATCATTACACATTATACTTTTCCCTTAGAAAATTTGAACTATTCAAATTTCAACCAATAATAACCTCAATATTCTTTACAAGCTAGGAAGGGGACCTAATGGACCTACAGATCAGAAGCTCCAACGATATGAGATTAACGAGCTAAACTCATTAACCACATTAATCCATATTCGTTAACTGTGGGTACACTCCACTAAAGACCCATAGTTGCACTCTTCTCACTGTAGATATATTTCTGTGTCCACGGATATAGACCAATGACAGCAAGTTAGTCCTTCACAAGTGTTCGTAACACCAGCTGGGTCAAATTACCGTTATACCCCTGGGTTACTTCTAAATCCTTAAGTACCAGTGCTCCTCTAATGAACAACCTGTTTATGGTCCAACCATCAAATAGAAACCCCTCTCGGGCCAGTGAGAGGGTAGGGCCCTATGTTCAAGTCTCGGAGACACCACTTAAGGGAACACTTATCTACTTACCCTACAGTCGAGAAGGAGTGAAATCCATCTTGTATAATTATGTTCCCAGCTCCTCACTCAGTCTTGTCCCCAAAATGGTAGGCATATCGAGTCGACAAACGGCCACTCTCACCCATACAAATCAAAGGACAATCCCTCGTGAACAGGAGTTCACAATATACTCAAGATTAAGACTAAGTTGCCTAGGTCAACCTATTGAAATAGAAACCTAACCAGTCAACGGAGTTACATCTAGTGATTACTATTTCGTGGTCCAGTCTTATGCAAACTCATTGCATAGGATACCCCCACTCGCATGTCTCCTACATGAACGCGTTGGATCATTGCATTTGTATCAAATACAAAGTGGGCCGTATCCATAGTGTTACCAGGATAAGGTACCCAACCCTATCTTTATACTATAGACCCTTTAGGTTGTAACTTGAACATTGATCTCTATATGTCTCTACATATTGTTCAAGACTCATAAAACAACCTAAGATGTTAGTTTATTGGATTTTAGGGTTATTAAAACAAGATAAAATAATCAATAACATTTATTGAATAATAATGAATAATCATTTATTAATGACGGTCAAAATACAACATTTACTATCTACGAGTTTTAGGGCATCAAACCCAACAGATTTGATGTTATCTAGGTTGCACAATAGATAGATGCATCCTAAACCGTATCTAAATTTTTTTCCGAAATCTTTTGTATATCCACCTTCTTTTATTATTATTATTTTTTAAATATTTCATTCAATTAATAAAATTGTTTCTTACAACGACTAAATTGGAAAGTCTTAAAGATAAGGAAGTAAATTGAAAGTTTTGTGAAAGAGGTGTGTTTTGGGTGCAGATGTTGGAGGTCAGGCACATTTCCTCTGTGTAATGGAAGCCATGTTAAGCACAACAAAGCAACTGGAGATAATGTAGGTCCTTTGCTTTTAAAGAAGCAGTAG

mRNA sequence

ATGGCGTCCATTGTAGCCATTTCTGCTCCTTCTTCCCTATCAATAAGAAGCCATCCTCCTCATCGTAGTTTCAACGGCGGCGGACGACGTCGTATGGTGGTCGTAAGAGCTGAAGGCGGCGGCGAACCCATAAACCCTGCAATCAGGAAGACAGAAGACAAAGTGGTGGACTCTGTCCTCATTGCTGAACTTTCCAAGCCCCTCACTCCTTATTGCAGATGTTGGAGGTCAGGCACATTTCCTCTGTGTAATGGAAGCCATGTTAAGCACAACAAAGCAACTGGAGATAATGTAGGTCCTTTGCTTTTAAAGAAGCAGTAG

Coding sequence (CDS)

ATGGCGTCCATTGTAGCCATTTCTGCTCCTTCTTCCCTATCAATAAGAAGCCATCCTCCTCATCGTAGTTTCAACGGCGGCGGACGACGTCGTATGGTGGTCGTAAGAGCTGAAGGCGGCGGCGAACCCATAAACCCTGCAATCAGGAAGACAGAAGACAAAGTGGTGGACTCTGTCCTCATTGCTGAACTTTCCAAGCCCCTCACTCCTTATTGCAGATGTTGGAGGTCAGGCACATTTCCTCTGTGTAATGGAAGCCATGTTAAGCACAACAAAGCAACTGGAGATAATGTAGGTCCTTTGCTTTTAAAGAAGCAGTAG

Protein sequence

MASIVAISAPSSLSIRSHPPHRSFNGGGRRRMVVVRAEGGGEPINPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCNGSHVKHNKATGDNVGPLLLKKQ

Homology

[Close]

BLAST of HG10009419 vs. NCBI nr
Match: XP_038876467.1 (CDGSH iron-sulfur domain-containing protein NEET [Benincasa hispida])

HSP 1 Score: 185.3 bits (469), Expect = 2.8e-43
Identity = 92/106 (86.79%), Postives = 96/106 (90.57%), Query Frame = 0


Query: 1   MASIVAISAPSSLSIRSHPPHRSFNGGGRRRMVVVRAEG-GGEPINPAIRKTEDKVVDSV 60
           MASIVAIS PSSLSI S PPH +F G GRR  VVVRA+G GGEPINPAIRKTEDKVVDSV
Sbjct: 1   MASIVAISLPSSLSITSRPPHSNFIGSGRRSTVVVRAQGSGGEPINPAIRKTEDKVVDSV 60

Query: 61  LIAELSKPLTPYCRCWRSGTFPLCNGSHVKHNKATGDNVGPLLLKK 106
           LIAELSKPLTPYCRCWRS TFPLC+GSHVKHNKATGDNVGPLLLK+
Sbjct: 61  LIAELSKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKQ 106

[Close]

BLAST of HG10009419 vs. NCBI nr
Match: XP_004143713.1 (CDGSH iron-sulfur domain-containing protein NEET [Cucumis sativus] >KGN50388.1 hypothetical protein Csa_000068 [Cucumis sativus])

HSP 1 Score: 171.4 bits (433), Expect = 4.2e-39
Identity = 88/108 (81.48%), Postives = 94/108 (87.04%), Query Frame = 0


Query: 1   MASIVAISAP-SSLSIRSHPPHRSFNGGGRRRMVVVRAEGG--GEPINPAIRKTEDKVVD 60
           MASI+ IS+P SSLS R H   R+FN  GRRR VVVRAEGG  GE INPAIRK+EDKVVD
Sbjct: 1   MASILPISSPSSSLSTRPHLLSRNFNDNGRRRTVVVRAEGGSSGEHINPAIRKSEDKVVD 60

Query: 61  SVLIAELSKPLTPYCRCWRSGTFPLCNGSHVKHNKATGDNVGPLLLKK 106
           SVL+ ELSKPLTPYCRCWRSGTFPLC+GSHVKHNKATGDNVGPLLLKK
Sbjct: 61  SVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK 108

[Close]

BLAST of HG10009419 vs. NCBI nr
Match: XP_008467263.1 (PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Cucumis melo] >KAA0055137.1 CDGSH iron-sulfur domain-containing protein NEET [Cucumis melo var. makuwa])

HSP 1 Score: 166.4 bits (420), Expect = 1.3e-37
Identity = 90/108 (83.33%), Postives = 95/108 (87.96%), Query Frame = 0


Query: 1   MASIVAISAP-SSLSIRSH-PPHRSFNGGGRRRMVVVRAEG-GGEPINPAIRKTEDKVVD 60
           MASIVAIS+P SSLS R+     RSFN  GRRR VVVRAEG  GE INPAIRK+E+KVVD
Sbjct: 1   MASIVAISSPSSSLSTRAGLLLPRSFNDNGRRRTVVVRAEGSSGEHINPAIRKSEEKVVD 60

Query: 61  SVLIAELSKPLTPYCRCWRSGTFPLCNGSHVKHNKATGDNVGPLLLKK 106
           SVLIAELSKPLTPYCRCWRSGTFPLC+GSHVKHNKATGDNVGPLLLKK
Sbjct: 61  SVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK 108

[Close]

BLAST of HG10009419 vs. NCBI nr
Match: XP_022159571.1 (CDGSH iron-sulfur domain-containing protein NEET [Momordica charantia])

HSP 1 Score: 160.6 bits (405), Expect = 7.4e-36
Identity = 82/113 (72.57%), Postives = 90/113 (79.65%), Query Frame = 0


Query: 1   MASIVAISAPSSLSIRS-HPPH------RSFNGGGRRRMVVVRAEGGGEPINPAIRKTED 60
           MASI+   A S  SI S H  H      RS  GGGRRR+ VVRAE G EPINPAIRK+ED
Sbjct: 1   MASIIVTIAGSVASISSTHAAHRNLYSSRSSRGGGRRRLAVVRAEAGAEPINPAIRKSED 60

Query: 61  KVVDSVLIAELSKPLTPYCRCWRSGTFPLCNGSHVKHNKATGDNVGPLLLKKQ 107
           KVVDSVL+++L+KPLT YCRCWRS TFPLC+GSHVKHNKATGDNVGPLLLKKQ
Sbjct: 61  KVVDSVLLSDLAKPLTAYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKKQ 113

[Close]

BLAST of HG10009419 vs. NCBI nr
Match: XP_022996357.1 (CDGSH iron-sulfur domain-containing protein NEET [Cucurbita maxima])

HSP 1 Score: 158.3 bits (399), Expect = 3.7e-35
Identity = 81/108 (75.00%), Postives = 91/108 (84.26%), Query Frame = 0


Query: 1   MASIVAISAPSSLSIRSHPPHRSFNGGG--RRRMVVVRAEGGGEPINPAIRKTEDKVVDS 60
           MAS+ A SA  +    + PPH +F  GG  RRRMVVVRAE GGE INPAIRK+EDKVVDS
Sbjct: 1   MASLAATSALPT----TRPPHGNFTVGGMPRRRMVVVRAE-GGEAINPAIRKSEDKVVDS 60

Query: 61  VLIAELSKPLTPYCRCWRSGTFPLCNGSHVKHNKATGDNVGPLLLKKQ 107
           V++A+L+KPLTPYCRCWRS TFPLC+GSHVKHNKATGDNVGPLLLKKQ
Sbjct: 61  VVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKKQ 103

[Close]

BLAST of HG10009419 vs. ExPASy Swiss-Prot
Match: Q9FLI7 (CDGSH iron-sulfur domain-containing protein NEET OS=Arabidopsis thaliana OX=3702 GN=NEET PE=1 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 2.7e-33
Identity = 74/108 (68.52%), Postives = 84/108 (77.78%), Query Frame = 0


Query: 3   SIVAISAPSSLSIRSHPPHRSFNGG--GRR--RMVVVRAEGGGEPINPAIRKTEDKVVDS 62
           +I+A +  + LS     P +   GG  GR+  RMVVVRAEGGG  INP IRK EDKVVDS
Sbjct: 2   AIIASTFGTGLSYAGELPFKPVTGGEVGRKQQRMVVVRAEGGG-GINPEIRKNEDKVVDS 61

Query: 63  VLIAELSKPLTPYCRCWRSGTFPLCNGSHVKHNKATGDNVGPLLLKKQ 107
           V++ ELSK +TPYCRCWRSGTFPLC+GSHVKHNKA GDNVGPLLLKKQ
Sbjct: 62  VVVTELSKNITPYCRCWRSGTFPLCDGSHVKHNKANGDNVGPLLLKKQ 108

[Close]

BLAST of HG10009419 vs. ExPASy Swiss-Prot
Match: Q7T326 (CDGSH iron-sulfur domain-containing protein 2 OS=Danio rerio OX=7955 GN=cisd2 PE=2 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.0e-16
Identity = 37/63 (58.73%), Postives = 47/63 (74.60%), Query Frame = 0


Query: 44  INPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCNGSHVKHNKATGDNVGPLLL 103
           IN  I+K   KVV+ + I +L  P   YCRCWRS TFP+C+ SH+KHN+ TGDNVGPL+L
Sbjct: 71  INLKIQKENPKVVNEIDIEDLRTPNVCYCRCWRSKTFPVCDKSHIKHNELTGDNVGPLIL 130

Query: 104 KKQ 107
           KK+
Sbjct: 131 KKK 133

[Close]

BLAST of HG10009419 vs. ExPASy Swiss-Prot
Match: C1BI29 (CDGSH iron-sulfur domain-containing protein 2A OS=Oncorhynchus mykiss OX=8022 GN=cisd2a PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 6.7e-16
Identity = 36/63 (57.14%), Postives = 48/63 (76.19%), Query Frame = 0


Query: 44  INPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCNGSHVKHNKATGDNVGPLLL 103
           IN  I+K   KVV+ + I +L++    YCRCWRS TFP+C+ SH+KHN+ TGDNVGPL+L
Sbjct: 71  INLEIQKENPKVVNEIDIEDLNRTNVCYCRCWRSKTFPVCDKSHIKHNELTGDNVGPLIL 130

Query: 104 KKQ 107
           KK+
Sbjct: 131 KKK 133

[Close]

BLAST of HG10009419 vs. ExPASy Swiss-Prot
Match: Q6PCF8 (CDGSH iron-sulfur domain-containing protein 2A OS=Xenopus laevis OX=8355 GN=cisd2-a PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 6.7e-16
Identity = 37/63 (58.73%), Postives = 46/63 (73.02%), Query Frame = 0


Query: 44  INPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCNGSHVKHNKATGDNVGPLLL 103
           IN  I+K   KVV+ + I +L      YCRCWRS TFP+C+GSH KHN+ TGDNVGPL+L
Sbjct: 71  INLKIQKENPKVVNEINIEDLHLAKAAYCRCWRSKTFPVCDGSHNKHNELTGDNVGPLIL 130

Query: 104 KKQ 107
           KK+
Sbjct: 131 KKK 133

[Close]

BLAST of HG10009419 vs. ExPASy Swiss-Prot
Match: Q6AZG1 (CDGSH iron-sulfur domain-containing protein 2B OS=Xenopus laevis OX=8355 GN=cisd2-b PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 6.7e-16
Identity = 37/63 (58.73%), Postives = 46/63 (73.02%), Query Frame = 0


Query: 44  INPAIRKTEDKVVDSVLIAELSKPLTPYCRCWRSGTFPLCNGSHVKHNKATGDNVGPLLL 103
           IN  I+K   KVV+ + I +L      YCRCWRS TFP+C+GSH KHN+ TGDNVGPL+L
Sbjct: 71  INLKIQKENPKVVNEINIEDLHLAKAAYCRCWRSKTFPVCDGSHNKHNELTGDNVGPLIL 130

Query: 104 KKQ 107
           KK+
Sbjct: 131 KKK 133

[Close]

BLAST of HG10009419 vs. ExPASy TrEMBL
Match: A0A0A0KL88 (ZnF_CDGSH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G171700 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.0e-39
Identity = 88/108 (81.48%), Postives = 94/108 (87.04%), Query Frame = 0


Query: 1   MASIVAISAP-SSLSIRSHPPHRSFNGGGRRRMVVVRAEGG--GEPINPAIRKTEDKVVD 60
           MASI+ IS+P SSLS R H   R+FN  GRRR VVVRAEGG  GE INPAIRK+EDKVVD
Sbjct: 1   MASILPISSPSSSLSTRPHLLSRNFNDNGRRRTVVVRAEGGSSGEHINPAIRKSEDKVVD 60

Query: 61  SVLIAELSKPLTPYCRCWRSGTFPLCNGSHVKHNKATGDNVGPLLLKK 106
           SVL+ ELSKPLTPYCRCWRSGTFPLC+GSHVKHNKATGDNVGPLLLKK
Sbjct: 61  SVLVPELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK 108

[Close]

BLAST of HG10009419 vs. ExPASy TrEMBL
Match: A0A5A7UKN7 (CDGSH iron-sulfur domain-containing protein NEET OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold231G00670 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 6.5e-38
Identity = 90/108 (83.33%), Postives = 95/108 (87.96%), Query Frame = 0


Query: 1   MASIVAISAP-SSLSIRSH-PPHRSFNGGGRRRMVVVRAEG-GGEPINPAIRKTEDKVVD 60
           MASIVAIS+P SSLS R+     RSFN  GRRR VVVRAEG  GE INPAIRK+E+KVVD
Sbjct: 1   MASIVAISSPSSSLSTRAGLLLPRSFNDNGRRRTVVVRAEGSSGEHINPAIRKSEEKVVD 60

Query: 61  SVLIAELSKPLTPYCRCWRSGTFPLCNGSHVKHNKATGDNVGPLLLKK 106
           SVLIAELSKPLTPYCRCWRSGTFPLC+GSHVKHNKATGDNVGPLLLKK
Sbjct: 61  SVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK 108

[Close]

BLAST of HG10009419 vs. ExPASy TrEMBL
Match: A0A1S3CTC1 (CDGSH iron-sulfur domain-containing protein NEET OS=Cucumis melo OX=3656 GN=LOC103504660 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 6.5e-38
Identity = 90/108 (83.33%), Postives = 95/108 (87.96%), Query Frame = 0


Query: 1   MASIVAISAP-SSLSIRSH-PPHRSFNGGGRRRMVVVRAEG-GGEPINPAIRKTEDKVVD 60
           MASIVAIS+P SSLS R+     RSFN  GRRR VVVRAEG  GE INPAIRK+E+KVVD
Sbjct: 1   MASIVAISSPSSSLSTRAGLLLPRSFNDNGRRRTVVVRAEGSSGEHINPAIRKSEEKVVD 60

Query: 61  SVLIAELSKPLTPYCRCWRSGTFPLCNGSHVKHNKATGDNVGPLLLKK 106
           SVLIAELSKPLTPYCRCWRSGTFPLC+GSHVKHNKATGDNVGPLLLKK
Sbjct: 61  SVLIAELSKPLTPYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK 108

[Close]

BLAST of HG10009419 vs. ExPASy TrEMBL
Match: A0A6J1E4B9 (CDGSH iron-sulfur domain-containing protein NEET OS=Momordica charantia OX=3673 GN=LOC111025950 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 3.6e-36
Identity = 82/113 (72.57%), Postives = 90/113 (79.65%), Query Frame = 0


Query: 1   MASIVAISAPSSLSIRS-HPPH------RSFNGGGRRRMVVVRAEGGGEPINPAIRKTED 60
           MASI+   A S  SI S H  H      RS  GGGRRR+ VVRAE G EPINPAIRK+ED
Sbjct: 1   MASIIVTIAGSVASISSTHAAHRNLYSSRSSRGGGRRRLAVVRAEAGAEPINPAIRKSED 60

Query: 61  KVVDSVLIAELSKPLTPYCRCWRSGTFPLCNGSHVKHNKATGDNVGPLLLKKQ 107
           KVVDSVL+++L+KPLT YCRCWRS TFPLC+GSHVKHNKATGDNVGPLLLKKQ
Sbjct: 61  KVVDSVLLSDLAKPLTAYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKKQ 113

[Close]

BLAST of HG10009419 vs. ExPASy TrEMBL
Match: A0A6J1K1P5 (CDGSH iron-sulfur domain-containing protein NEET OS=Cucurbita maxima OX=3661 GN=LOC111491613 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.8e-35
Identity = 81/108 (75.00%), Postives = 91/108 (84.26%), Query Frame = 0


Query: 1   MASIVAISAPSSLSIRSHPPHRSFNGGG--RRRMVVVRAEGGGEPINPAIRKTEDKVVDS 60
           MAS+ A SA  +    + PPH +F  GG  RRRMVVVRAE GGE INPAIRK+EDKVVDS
Sbjct: 1   MASLAATSALPT----TRPPHGNFTVGGMPRRRMVVVRAE-GGEAINPAIRKSEDKVVDS 60

Query: 61  VLIAELSKPLTPYCRCWRSGTFPLCNGSHVKHNKATGDNVGPLLLKKQ 107
           V++A+L+KPLTPYCRCWRS TFPLC+GSHVKHNKATGDNVGPLLLKKQ
Sbjct: 61  VVVADLAKPLTPYCRCWRSATFPLCDGSHVKHNKATGDNVGPLLLKKQ 103

[Close]

BLAST of HG10009419 vs. TAIR 10
Match: AT5G51720.1 (2 iron, 2 sulfur cluster binding )

HSP 1 Score: 142.5 bits (358), Expect = 1.9e-34
Identity = 74/108 (68.52%), Postives = 84/108 (77.78%), Query Frame = 0


Query: 3   SIVAISAPSSLSIRSHPPHRSFNGG--GRR--RMVVVRAEGGGEPINPAIRKTEDKVVDS 62
           +I+A +  + LS     P +   GG  GR+  RMVVVRAEGGG  INP IRK EDKVVDS
Sbjct: 2   AIIASTFGTGLSYAGELPFKPVTGGEVGRKQQRMVVVRAEGGG-GINPEIRKNEDKVVDS 61

Query: 63  VLIAELSKPLTPYCRCWRSGTFPLCNGSHVKHNKATGDNVGPLLLKKQ 107
           V++ ELSK +TPYCRCWRSGTFPLC+GSHVKHNKA GDNVGPLLLKKQ
Sbjct: 62  VVVTELSKNITPYCRCWRSGTFPLCDGSHVKHNKANGDNVGPLLLKKQ 108

The following BLAST results are available for this feature:

BLAST of HG10009419 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038876467.1	2.8e-43	86.79	CDGSH iron-sulfur domain-containing protein NEET [Benincasa hispida]	[more]
XP_004143713.1	4.2e-39	81.48	CDGSH iron-sulfur domain-containing protein NEET [Cucumis sativus] >KGN50388.1 h...	[more]
XP_008467263.1	1.3e-37	83.33	PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Cucumis melo] >KAA0...	[more]
XP_022159571.1	7.4e-36	72.57	CDGSH iron-sulfur domain-containing protein NEET [Momordica charantia]	[more]
XP_022996357.1	3.7e-35	75.00	CDGSH iron-sulfur domain-containing protein NEET [Cucurbita maxima]	[more]

BLAST of HG10009419 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FLI7	2.7e-33	68.52	CDGSH iron-sulfur domain-containing protein NEET OS=Arabidopsis thaliana OX=3702...	[more]
Q7T326	3.0e-16	58.73	CDGSH iron-sulfur domain-containing protein 2 OS=Danio rerio OX=7955 GN=cisd2 PE...	[more]
C1BI29	6.7e-16	57.14	CDGSH iron-sulfur domain-containing protein 2A OS=Oncorhynchus mykiss OX=8022 GN...	[more]
Q6PCF8	6.7e-16	58.73	CDGSH iron-sulfur domain-containing protein 2A OS=Xenopus laevis OX=8355 GN=cisd...	[more]
Q6AZG1	6.7e-16	58.73	CDGSH iron-sulfur domain-containing protein 2B OS=Xenopus laevis OX=8355 GN=cisd...	[more]

BLAST of HG10009419 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KL88	2.0e-39	81.48	ZnF_CDGSH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G171700 P...	[more]
A0A5A7UKN7	6.5e-38	83.33	CDGSH iron-sulfur domain-containing protein NEET OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S3CTC1	6.5e-38	83.33	CDGSH iron-sulfur domain-containing protein NEET OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A6J1E4B9	3.6e-36	72.57	CDGSH iron-sulfur domain-containing protein NEET OS=Momordica charantia OX=3673 ...	[more]
A0A6J1K1P5	1.8e-35	75.00	CDGSH iron-sulfur domain-containing protein NEET OS=Cucurbita maxima OX=3661 GN=...	[more]

BLAST of HG10009419 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G51720.1	1.9e-34	68.52	2 iron, 2 sulfur cluster binding	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018967	Iron-binding zinc finger, CDGSH type	SMART	SM00704	znf_cdgsh	coord: 54..93 e-value: 5.2E-5 score: 32.6
IPR018967	Iron-binding zinc finger, CDGSH type	PFAM	PF09360	zf-CDGSH	coord: 64..87 e-value: 5.0E-7 score: 29.9
IPR042216	MitoNEET, CDGSH iron-sulfur domain	GENE3D	3.40.5.90		coord: 60..106 e-value: 1.0E-22 score: 81.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	PANTHER	PTHR13680:SF5	CDGSH IRON-SULFUR DOMAIN-CONTAINING PROTEIN 1	coord: 28..106
IPR045131	CDGSH iron-sulfur domain-containing protein 1/2	PANTHER	PTHR13680	CDGSH IRON-SULFUR DOMAIN-CONTAINING PROTEIN 1	coord: 28..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10009419.1	HG10009419.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010506	regulation of autophagy
cellular_component	GO:0005741	mitochondrial outer membrane
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0046872	metal ion binding