HG10009402 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10009402
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionProtein kinase domain-containing protein
LocationChr06: 5524083 .. 5524370 (+)
RNA-Seq ExpressionHG10009402
SyntenyHG10009402
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGCAAGGAGATTGGTGGAAGTTCAAGTTTCAGCAACCTTGCTGACAATTACAGAGGCATATTTGGCGATTGTCGACTCTGGGGATTGCCGAAGCTGCCCGACCACTGGAAATAGCTTTGATGAAAGAAGGAACTGTCGGCAGGGTGCGTGTGCGCACATCTTTGCCAAGGAAAACAGGGCTATCTTGAGAGGAGACTCATTTGCTGCATCTTTTCTGCTTGGATTCAAGGCTACTGCCGAACAGTCCGCCACCAACTTTAACAAAGCCTGTATTGATATTTAA

mRNA sequence

ATGATGGCAAGGAGATTGGTGGAAGTTCAAGTTTCAGCAACCTTGCTGACAATTACAGAGGCATATTTGGCGATTGTCGACTCTGGGGATTGCCGAAGCTGCCCGACCACTGGAAATAGCTTTGATGAAAGAAGGAACTGTCGGCAGGGTGCGTGTGCGCACATCTTTGCCAAGGAAAACAGGGCTATCTTGAGAGGAGACTCATTTGCTGCATCTTTTCTGCTTGGATTCAAGGCTACTGCCGAACAGTCCGCCACCAACTTTAACAAAGCCTGTATTGATATTTAA

Coding sequence (CDS)

ATGATGGCAAGGAGATTGGTGGAAGTTCAAGTTTCAGCAACCTTGCTGACAATTACAGAGGCATATTTGGCGATTGTCGACTCTGGGGATTGCCGAAGCTGCCCGACCACTGGAAATAGCTTTGATGAAAGAAGGAACTGTCGGCAGGGTGCGTGTGCGCACATCTTTGCCAAGGAAAACAGGGCTATCTTGAGAGGAGACTCATTTGCTGCATCTTTTCTGCTTGGATTCAAGGCTACTGCCGAACAGTCCGCCACCAACTTTAACAAAGCCTGTATTGATATTTAA

Protein sequence

MMARRLVEVQVSATLLTITEAYLAIVDSGDCRSCPTTGNSFDERRNCRQGACAHIFAKENRAILRGDSFAASFLLGFKATAEQSATNFNKACIDI
Homology
BLAST of HG10009402 vs. NCBI nr
Match: KAF7825090.1 (delta(24)-sterol reductase-like [Senna tora])

HSP 1 Score: 115.2 bits (287), Expect = 3.2e-22
Identity = 59/87 (67.82%), Postives = 65/87 (74.71%), Query Frame = 0

Query: 6   LVEVQVSATLLTITEAYLAIVDSGDCRSCPTTGNSFDERRNCRQGACAHIFAKENRAILR 65
           L E Q SATLL +TEAYLAI DSGDC + PTTGN  DERRNC QG CAHI AKE RAI +
Sbjct: 70  LFEHQASATLLIMTEAYLAICDSGDCCNLPTTGNKGDERRNCLQGECAHILAKEKRAIFK 129

Query: 66  GDSFAASFLLGFKATAEQSATNFNKAC 93
           G+S A SFLLGF A  EQS  +F +AC
Sbjct: 130 GESLAESFLLGFNAITEQSDISFRRAC 156

BLAST of HG10009402 vs. NCBI nr
Match: XP_022559966.1 (delta(24)-sterol reductase-like [Brassica napus])

HSP 1 Score: 63.9 bits (154), Expect = 8.4e-07
Identity = 35/58 (60.34%), Postives = 38/58 (65.52%), Query Frame = 0

Query: 37  TGNSFDERRNCRQ-GACAHIFAKENRAILRGDSFAASFLLGFKATAEQSATNFNKACI 94
           TGN+ D+  NC       HI A E  AIL GDS A SFLLGFKATAEQS TNF+  CI
Sbjct: 545 TGNNSDDFTNCLHIWWFEHILANEKSAILSGDSLAVSFLLGFKATAEQSETNFSNVCI 602

BLAST of HG10009402 vs. ExPASy TrEMBL
Match: A0A2N9H408 (Protein kinase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS34146 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 7.7e-06
Identity = 29/41 (70.73%), Postives = 32/41 (78.05%), Query Frame = 0

Query: 10  QVSATLLTITEAYLAIVDSGDCRSCPTTGNSFDERRNCRQG 51
           Q S TLL +TEAY  IVDSGDCRS P TGN+ DE+RNC QG
Sbjct: 783 QASETLLIMTEAYWEIVDSGDCRSRPITGNNSDEQRNCLQG 823

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAF7825090.13.2e-2267.82delta(24)-sterol reductase-like [Senna tora][more]
XP_022559966.18.4e-0760.34delta(24)-sterol reductase-like [Brassica napus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2N9H4087.7e-0670.73Protein kinase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCU... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10009402.1HG10009402.1mRNA