
HG10009374 (gene) Bottle gourd (Hangzhou Gourd) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTCCCAGTGTATGTACCAACTAATGCAAGGAAGGAGGTGGCCTTGTTTTTGAAGAAAATTTCCTCACTTGTGCCTGCTCTCCATCTTGTTGATGTTGACGTTCCTTTGGATTTTTTATGCAAAGATGAACACAAACTTGAGCAAGCATTGGCTAGAGAATTTCACATAAGTTTGTCAAGAACAGTGCCAATCCGAGTACACCAGATTGACTCAATAGTGACAATGCTTCGCCAGAAGCTTCAGTCTCAAAGGCGGTAAGTTTAAACTCTCCATTTAGTTCGATTAGTAATGTCCAACTTGTTTTTGTATTTAACTTGTGCTTTTTTTAACAGTTATTGGATTGATTTTAGTAAGTGGGAGACTTTTGTTAACGATGATCTCTCTCGAACCTTTTTGTCAATGGAAATTATTACTGGAGGGCTAATGGAGGTACGCCATGTTTGA ATGTTCCCAGTGTATGTACCAACTAATGCAAGGAAGGAGGTGGCCTTGTTTTTGAAGAAAATTTCCTCACTTGTGCCTGCTCTCCATCTTGTTGATGTTGACGTTCCTTTGGATTTTTTATGCAAAGATGAACACAAACTTGAGCAAGCATTGGCTAGAGAATTTCACATAAGTTTGTCAAGAACAGTGCCAATCCGAGTACACCAGATTGACTCAATAGTGACAATGCTTCGCCAGAAGCTTCAGTCTCAAAGGCGTAAGTGGGAGACTTTTGTTAACGATGATCTCTCTCGAACCTTTTTGTCAATGGAAATTATTACTGGAGGGCTAATGGAGGTACGCCATGTTTGA ATGTTCCCAGTGTATGTACCAACTAATGCAAGGAAGGAGGTGGCCTTGTTTTTGAAGAAAATTTCCTCACTTGTGCCTGCTCTCCATCTTGTTGATGTTGACGTTCCTTTGGATTTTTTATGCAAAGATGAACACAAACTTGAGCAAGCATTGGCTAGAGAATTTCACATAAGTTTGTCAAGAACAGTGCCAATCCGAGTACACCAGATTGACTCAATAGTGACAATGCTTCGCCAGAAGCTTCAGTCTCAAAGGCGTAAGTGGGAGACTTTTGTTAACGATGATCTCTCTCGAACCTTTTTGTCAATGGAAATTATTACTGGAGGGCTAATGGAGGTACGCCATGTTTGA MFPVYVPTNARKEVALFLKKISSLVPALHLVDVDVPLDFLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVTMLRQKLQSQRRKWETFVNDDLSRTFLSMEIITGGLMEVRHV Homology
BLAST of HG10009374 vs. NCBI nr
Match: KAA0055091.1 (U6 snRNA phosphodiesterase [Cucumis melo var. makuwa]) HSP 1 Score: 211.1 bits (536), Expect = 5.2e-51 Identity = 107/120 (89.17%), Postives = 112/120 (93.33%), Query Frame = 0
BLAST of HG10009374 vs. NCBI nr
Match: XP_038875355.1 (U6 snRNA phosphodiesterase isoform X2 [Benincasa hispida]) HSP 1 Score: 207.6 bits (527), Expect = 5.8e-50 Identity = 105/118 (88.98%), Postives = 110/118 (93.22%), Query Frame = 0
BLAST of HG10009374 vs. NCBI nr
Match: XP_038875354.1 (U6 snRNA phosphodiesterase isoform X1 [Benincasa hispida]) HSP 1 Score: 207.6 bits (527), Expect = 5.8e-50 Identity = 105/118 (88.98%), Postives = 110/118 (93.22%), Query Frame = 0
BLAST of HG10009374 vs. NCBI nr
Match: XP_008467330.1 (PREDICTED: U6 snRNA phosphodiesterase [Cucumis melo]) HSP 1 Score: 206.5 bits (524), Expect = 1.3e-49 Identity = 105/118 (88.98%), Postives = 110/118 (93.22%), Query Frame = 0
BLAST of HG10009374 vs. NCBI nr
Match: KAG6579639.1 (U6 snRNA phosphodiesterase, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 205.3 bits (521), Expect = 2.9e-49 Identity = 103/118 (87.29%), Postives = 109/118 (92.37%), Query Frame = 0
BLAST of HG10009374 vs. ExPASy Swiss-Prot
Match: Q54W16 (U6 snRNA phosphodiesterase OS=Dictyostelium discoideum OX=44689 GN=DDB_G0279967 PE=3 SV=1) HSP 1 Score: 48.5 bits (114), Expect = 5.9e-05 Identity = 31/107 (28.97%), Postives = 54/107 (50.47%), Query Frame = 0
BLAST of HG10009374 vs. ExPASy Swiss-Prot
Match: Q6DEF6 (U6 snRNA phosphodiesterase OS=Danio rerio OX=7955 GN=usb1 PE=2 SV=1) HSP 1 Score: 47.0 bits (110), Expect = 1.7e-04 Identity = 26/72 (36.11%), Postives = 39/72 (54.17%), Query Frame = 0
BLAST of HG10009374 vs. ExPASy TrEMBL
Match: A0A5A7UND6 (U6 snRNA phosphodiesterase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold231G00170 PE=4 SV=1) HSP 1 Score: 211.1 bits (536), Expect = 2.5e-51 Identity = 107/120 (89.17%), Postives = 112/120 (93.33%), Query Frame = 0
BLAST of HG10009374 vs. ExPASy TrEMBL
Match: A0A1S3CTB0 (U6 snRNA phosphodiesterase OS=Cucumis melo OX=3656 GN=LOC103504707 PE=3 SV=1) HSP 1 Score: 206.5 bits (524), Expect = 6.2e-50 Identity = 105/118 (88.98%), Postives = 110/118 (93.22%), Query Frame = 0
BLAST of HG10009374 vs. ExPASy TrEMBL
Match: A0A6J1EQH7 (U6 snRNA phosphodiesterase OS=Cucurbita moschata OX=3662 GN=LOC111435686 PE=3 SV=1) HSP 1 Score: 202.2 bits (513), Expect = 1.2e-48 Identity = 102/118 (86.44%), Postives = 108/118 (91.53%), Query Frame = 0
BLAST of HG10009374 vs. ExPASy TrEMBL
Match: A0A6J1HYN3 (U6 snRNA phosphodiesterase OS=Cucurbita maxima OX=3661 GN=LOC111468846 PE=3 SV=1) HSP 1 Score: 201.1 bits (510), Expect = 2.6e-48 Identity = 102/118 (86.44%), Postives = 108/118 (91.53%), Query Frame = 0
BLAST of HG10009374 vs. ExPASy TrEMBL
Match: A0A0A0KPH5 (U6 snRNA phosphodiesterase OS=Cucumis sativus OX=3659 GN=Csa_5G167730 PE=3 SV=1) HSP 1 Score: 201.1 bits (510), Expect = 2.6e-48 Identity = 103/118 (87.29%), Postives = 108/118 (91.53%), Query Frame = 0
BLAST of HG10009374 vs. TAIR 10
Match: AT5G51170.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0406 (InterPro:IPR019146); Has 166 Blast hits to 166 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 100; Fungi - 19; Plants - 35; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). ) HSP 1 Score: 147.1 bits (370), Expect = 8.6e-36 Identity = 72/117 (61.54%), Postives = 90/117 (76.92%), Query Frame = 0
BLAST of HG10009374 vs. TAIR 10
Match: AT5G51170.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0406 (InterPro:IPR019146); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 146.7 bits (369), Expect = 1.1e-35 Identity = 71/117 (60.68%), Postives = 90/117 (76.92%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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