HG10009374 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10009374
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	U6 snRNA phosphodiesterase
Location	Chr06: 5210377 .. 5210823 (+)
RNA-Seq Expression	HG10009374
Synteny	HG10009374

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCCCAGTGTATGTACCAACTAATGCAAGGAAGGAGGTGGCCTTGTTTTTGAAGAAAATTTCCTCACTTGTGCCTGCTCTCCATCTTGTTGATGTTGACGTTCCTTTGGATTTTTTATGCAAAGATGAACACAAACTTGAGCAAGCATTGGCTAGAGAATTTCACATAAGTTTGTCAAGAACAGTGCCAATCCGAGTACACCAGATTGACTCAATAGTGACAATGCTTCGCCAGAAGCTTCAGTCTCAAAGGCGGTAAGTTTAAACTCTCCATTTAGTTCGATTAGTAATGTCCAACTTGTTTTTGTATTTAACTTGTGCTTTTTTTAACAGTTATTGGATTGATTTTAGTAAGTGGGAGACTTTTGTTAACGATGATCTCTCTCGAACCTTTTTGTCAATGGAAATTATTACTGGAGGGCTAATGGAGGTACGCCATGTTTGA

mRNA sequence

ATGTTCCCAGTGTATGTACCAACTAATGCAAGGAAGGAGGTGGCCTTGTTTTTGAAGAAAATTTCCTCACTTGTGCCTGCTCTCCATCTTGTTGATGTTGACGTTCCTTTGGATTTTTTATGCAAAGATGAACACAAACTTGAGCAAGCATTGGCTAGAGAATTTCACATAAGTTTGTCAAGAACAGTGCCAATCCGAGTACACCAGATTGACTCAATAGTGACAATGCTTCGCCAGAAGCTTCAGTCTCAAAGGCGTAAGTGGGAGACTTTTGTTAACGATGATCTCTCTCGAACCTTTTTGTCAATGGAAATTATTACTGGAGGGCTAATGGAGGTACGCCATGTTTGA

Coding sequence (CDS)

ATGTTCCCAGTGTATGTACCAACTAATGCAAGGAAGGAGGTGGCCTTGTTTTTGAAGAAAATTTCCTCACTTGTGCCTGCTCTCCATCTTGTTGATGTTGACGTTCCTTTGGATTTTTTATGCAAAGATGAACACAAACTTGAGCAAGCATTGGCTAGAGAATTTCACATAAGTTTGTCAAGAACAGTGCCAATCCGAGTACACCAGATTGACTCAATAGTGACAATGCTTCGCCAGAAGCTTCAGTCTCAAAGGCGTAAGTGGGAGACTTTTGTTAACGATGATCTCTCTCGAACCTTTTTGTCAATGGAAATTATTACTGGAGGGCTAATGGAGGTACGCCATGTTTGA

Protein sequence

MFPVYVPTNARKEVALFLKKISSLVPALHLVDVDVPLDFLCKDEHKLEQALAREFHISLSRTVPIRVHQIDSIVTMLRQKLQSQRRKWETFVNDDLSRTFLSMEIITGGLMEVRHV

Homology

[Close]

BLAST of HG10009374 vs. NCBI nr
Match: KAA0055091.1 (U6 snRNA phosphodiesterase [Cucumis melo var. makuwa])

HSP 1 Score: 211.1 bits (536), Expect = 5.2e-51
Identity = 107/120 (89.17%), Postives = 112/120 (93.33%), Query Frame = 0


Query: 3   PVYVPTNARKEVALFLKKISSLVPALHLVDVDVPLDFLCKDEHKLEQALAREFHISLSRT 62
           PVYVPTNARKEVALF+KKISSLVPALHLVD+D+PLD LCKD+HKLEQALAREFHISLSRT
Sbjct: 87  PVYVPTNARKEVALFMKKISSLVPALHLVDIDIPLDVLCKDDHKLEQALAREFHISLSRT 146

Query: 63  VPIRVHQIDSIVTMLRQKLQSQRR------KWETFVNDDLSRTFLSMEIITGGLMEVRHV 117
           VPIRVHQIDSIVTMLRQKLQS RR      KWETFVNDDLSRTFLSMEIITGGLMEVRH+
Sbjct: 147 VPIRVHQIDSIVTMLRQKLQSPRRYWIDFSKWETFVNDDLSRTFLSMEIITGGLMEVRHI 206

[Close]

BLAST of HG10009374 vs. NCBI nr
Match: XP_038875355.1 (U6 snRNA phosphodiesterase isoform X2 [Benincasa hispida])

HSP 1 Score: 207.6 bits (527), Expect = 5.8e-50
Identity = 105/118 (88.98%), Postives = 110/118 (93.22%), Query Frame = 0


Query: 3   PVYVPTNARKEVALFLKKISSLVPALHLVDVDVPLDFLCKDEHKLEQALAREFHISLSRT 62
           PVYVPTN RKEVALFLKK+SSLVPALHLVD+DVPLD LCKD+HKLEQALAREFH+SLSRT
Sbjct: 89  PVYVPTNGRKEVALFLKKVSSLVPALHLVDIDVPLDVLCKDDHKLEQALAREFHVSLSRT 148

Query: 63  VPIRVHQIDSIVTMLRQKLQSQRR------KWETFVNDDLSRTFLSMEIITGGLMEVR 115
           VPIRVHQIDSIVTMLRQKLQSQRR      KWETFVNDDLSRTFLSMEIITGGLME+R
Sbjct: 149 VPIRVHQIDSIVTMLRQKLQSQRRYWIDFSKWETFVNDDLSRTFLSMEIITGGLMEIR 206

[Close]

BLAST of HG10009374 vs. NCBI nr
Match: XP_038875354.1 (U6 snRNA phosphodiesterase isoform X1 [Benincasa hispida])

HSP 1 Score: 207.6 bits (527), Expect = 5.8e-50
Identity = 105/118 (88.98%), Postives = 110/118 (93.22%), Query Frame = 0


Query: 3   PVYVPTNARKEVALFLKKISSLVPALHLVDVDVPLDFLCKDEHKLEQALAREFHISLSRT 62
           PVYVPTN RKEVALFLKK+SSLVPALHLVD+DVPLD LCKD+HKLEQALAREFH+SLSRT
Sbjct: 89  PVYVPTNGRKEVALFLKKVSSLVPALHLVDIDVPLDVLCKDDHKLEQALAREFHVSLSRT 148

Query: 63  VPIRVHQIDSIVTMLRQKLQSQRR------KWETFVNDDLSRTFLSMEIITGGLMEVR 115
           VPIRVHQIDSIVTMLRQKLQSQRR      KWETFVNDDLSRTFLSMEIITGGLME+R
Sbjct: 149 VPIRVHQIDSIVTMLRQKLQSQRRYWIDFSKWETFVNDDLSRTFLSMEIITGGLMEIR 206

[Close]

BLAST of HG10009374 vs. NCBI nr
Match: XP_008467330.1 (PREDICTED: U6 snRNA phosphodiesterase [Cucumis melo])

HSP 1 Score: 206.5 bits (524), Expect = 1.3e-49
Identity = 105/118 (88.98%), Postives = 110/118 (93.22%), Query Frame = 0


Query: 3   PVYVPTNARKEVALFLKKISSLVPALHLVDVDVPLDFLCKDEHKLEQALAREFHISLSRT 62
           PVYVPTNARKEVALF+KKISSLVPALHLVD+D+PLD LCKD+HKLEQALAREFHISLSRT
Sbjct: 87  PVYVPTNARKEVALFMKKISSLVPALHLVDIDIPLDVLCKDDHKLEQALAREFHISLSRT 146

Query: 63  VPIRVHQIDSIVTMLRQKLQSQRR------KWETFVNDDLSRTFLSMEIITGGLMEVR 115
           VPIRVHQIDSIVTMLRQKLQS RR      KWETFVNDDLSRTFLSMEIITGGLME+R
Sbjct: 147 VPIRVHQIDSIVTMLRQKLQSPRRYWIDFSKWETFVNDDLSRTFLSMEIITGGLMEIR 204

[Close]

BLAST of HG10009374 vs. NCBI nr
Match: KAG6579639.1 (U6 snRNA phosphodiesterase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 205.3 bits (521), Expect = 2.9e-49
Identity = 103/118 (87.29%), Postives = 109/118 (92.37%), Query Frame = 0


Query: 3   PVYVPTNARKEVALFLKKISSLVPALHLVDVDVPLDFLCKDEHKLEQALAREFHISLSRT 62
           PVY+PTNARKEVALFLKK+S LVPALHLVD+D+PLD LCKD+HKLEQALAREFHISLSRT
Sbjct: 97  PVYIPTNARKEVALFLKKLSKLVPALHLVDIDIPLDILCKDDHKLEQALAREFHISLSRT 156

Query: 63  VPIRVHQIDSIVTMLRQKLQSQRR------KWETFVNDDLSRTFLSMEIITGGLMEVR 115
           VPIRVHQIDSIVTMLRQKLQSQRR      KWETFVNDDLSRTFLSMEII GGLME+R
Sbjct: 157 VPIRVHQIDSIVTMLRQKLQSQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGLMEIR 214

[Close]

BLAST of HG10009374 vs. ExPASy Swiss-Prot
Match: Q54W16 (U6 snRNA phosphodiesterase OS=Dictyostelium discoideum OX=44689 GN=DDB_G0279967 PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 5.9e-05
Identity = 31/107 (28.97%), Postives = 54/107 (50.47%), Query Frame = 0


Query: 6   VPTNARKEVALFLKKISSLVPALHLVDVDVPLDFLCKDEHKLEQALAREFHISLSRTVPI 65
           VPT +R ++   ++++  +                  +E  ++Q     FHIS+SRT PI
Sbjct: 89  VPTKSRNDIKELIEQVKEI-----------------GNEINIKQDTETCFHISISRTFPI 148

Query: 66  RVHQIDSIVTMLRQKLQSQR-------RKWETFVNDDLSRTFLSMEI 106
           R H I++    L++ L++QR       ++   F+ND+ SR FLS+ I
Sbjct: 149 REHHIETFTQELKKTLKNQRSIDIQLSKECCVFINDNQSRIFLSIPI 178

[Close]

BLAST of HG10009374 vs. ExPASy Swiss-Prot
Match: Q6DEF6 (U6 snRNA phosphodiesterase OS=Danio rerio OX=7955 GN=usb1 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.7e-04
Identity = 26/72 (36.11%), Postives = 39/72 (54.17%), Query Frame = 0


Query: 43  DEHKLEQALAREFHISLSRTVPIRVHQIDSIVTMLR------QKLQSQRRKWETFVNDDL 102
           + H +   ++ EFH+SLS+TV +R H I   V  +R      QK      K + + N + 
Sbjct: 118 EAHDIPLTVSEEFHLSLSKTVVLRHHWIQPFVQSIRTSLTHFQKFYCVAYKLKVYSNAEK 177

Query: 103 SRTFLSMEIITG 109
           +RTFL ME+ TG
Sbjct: 178 TRTFLGMEVSTG 189

[Close]

BLAST of HG10009374 vs. ExPASy TrEMBL
Match: A0A5A7UND6 (U6 snRNA phosphodiesterase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold231G00170 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 2.5e-51
Identity = 107/120 (89.17%), Postives = 112/120 (93.33%), Query Frame = 0


Query: 3   PVYVPTNARKEVALFLKKISSLVPALHLVDVDVPLDFLCKDEHKLEQALAREFHISLSRT 62
           PVYVPTNARKEVALF+KKISSLVPALHLVD+D+PLD LCKD+HKLEQALAREFHISLSRT
Sbjct: 87  PVYVPTNARKEVALFMKKISSLVPALHLVDIDIPLDVLCKDDHKLEQALAREFHISLSRT 146

Query: 63  VPIRVHQIDSIVTMLRQKLQSQRR------KWETFVNDDLSRTFLSMEIITGGLMEVRHV 117
           VPIRVHQIDSIVTMLRQKLQS RR      KWETFVNDDLSRTFLSMEIITGGLMEVRH+
Sbjct: 147 VPIRVHQIDSIVTMLRQKLQSPRRYWIDFSKWETFVNDDLSRTFLSMEIITGGLMEVRHI 206

[Close]

BLAST of HG10009374 vs. ExPASy TrEMBL
Match: A0A1S3CTB0 (U6 snRNA phosphodiesterase OS=Cucumis melo OX=3656 GN=LOC103504707 PE=3 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 6.2e-50
Identity = 105/118 (88.98%), Postives = 110/118 (93.22%), Query Frame = 0


Query: 3   PVYVPTNARKEVALFLKKISSLVPALHLVDVDVPLDFLCKDEHKLEQALAREFHISLSRT 62
           PVYVPTNARKEVALF+KKISSLVPALHLVD+D+PLD LCKD+HKLEQALAREFHISLSRT
Sbjct: 87  PVYVPTNARKEVALFMKKISSLVPALHLVDIDIPLDVLCKDDHKLEQALAREFHISLSRT 146

Query: 63  VPIRVHQIDSIVTMLRQKLQSQRR------KWETFVNDDLSRTFLSMEIITGGLMEVR 115
           VPIRVHQIDSIVTMLRQKLQS RR      KWETFVNDDLSRTFLSMEIITGGLME+R
Sbjct: 147 VPIRVHQIDSIVTMLRQKLQSPRRYWIDFSKWETFVNDDLSRTFLSMEIITGGLMEIR 204

[Close]

BLAST of HG10009374 vs. ExPASy TrEMBL
Match: A0A6J1EQH7 (U6 snRNA phosphodiesterase OS=Cucurbita moschata OX=3662 GN=LOC111435686 PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.2e-48
Identity = 102/118 (86.44%), Postives = 108/118 (91.53%), Query Frame = 0


Query: 3   PVYVPTNARKEVALFLKKISSLVPALHLVDVDVPLDFLCKDEHKLEQALAREFHISLSRT 62
           PVY+ TNARKEVALFLKK+S LVPALHLVD+D+PLD LCKD+HKLEQALAREFHISLSRT
Sbjct: 89  PVYITTNARKEVALFLKKLSKLVPALHLVDIDIPLDILCKDDHKLEQALAREFHISLSRT 148

Query: 63  VPIRVHQIDSIVTMLRQKLQSQRR------KWETFVNDDLSRTFLSMEIITGGLMEVR 115
           VPIRVHQIDSIVTMLRQKLQSQRR      KWETFVNDDLSRTFLSMEII GGLME+R
Sbjct: 149 VPIRVHQIDSIVTMLRQKLQSQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGLMEIR 206

[Close]

BLAST of HG10009374 vs. ExPASy TrEMBL
Match: A0A6J1HYN3 (U6 snRNA phosphodiesterase OS=Cucurbita maxima OX=3661 GN=LOC111468846 PE=3 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.6e-48
Identity = 102/118 (86.44%), Postives = 108/118 (91.53%), Query Frame = 0


Query: 3   PVYVPTNARKEVALFLKKISSLVPALHLVDVDVPLDFLCKDEHKLEQALAREFHISLSRT 62
           PVY+PTNARKEVALFLKK+S LVPALHLVD+D+PLD LCKD+ KLEQALAREFHISLSRT
Sbjct: 95  PVYIPTNARKEVALFLKKLSKLVPALHLVDIDIPLDILCKDDLKLEQALAREFHISLSRT 154

Query: 63  VPIRVHQIDSIVTMLRQKLQSQRR------KWETFVNDDLSRTFLSMEIITGGLMEVR 115
           VPIRVHQIDSIVTMLRQKLQSQRR      KWETFVNDDLSRTFLSMEII GGLME+R
Sbjct: 155 VPIRVHQIDSIVTMLRQKLQSQRRYWIDFSKWETFVNDDLSRTFLSMEIIAGGLMEIR 212

[Close]

BLAST of HG10009374 vs. ExPASy TrEMBL
Match: A0A0A0KPH5 (U6 snRNA phosphodiesterase OS=Cucumis sativus OX=3659 GN=Csa_5G167730 PE=3 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.6e-48
Identity = 103/118 (87.29%), Postives = 108/118 (91.53%), Query Frame = 0


Query: 3   PVYVPTNARKEVALFLKKISSLVPALHLVDVDVPLDFLCKDEHKLEQALAREFHISLSRT 62
           PVYVPTNARKEVALF+KKISSLVPALHLVD+D+PLD LCKD+ KLEQA AREFHISLSRT
Sbjct: 87  PVYVPTNARKEVALFMKKISSLVPALHLVDIDIPLDVLCKDDQKLEQAWAREFHISLSRT 146

Query: 63  VPIRVHQIDSIVTMLRQKLQSQRR------KWETFVNDDLSRTFLSMEIITGGLMEVR 115
           VPIRVHQIDSIVTMLRQKLQS RR      KWETFVNDDLSRTFLSMEIITGGLME+R
Sbjct: 147 VPIRVHQIDSIVTMLRQKLQSPRRYWIDFSKWETFVNDDLSRTFLSMEIITGGLMEIR 204

[Close]

BLAST of HG10009374 vs. TAIR 10
Match: AT5G51170.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0406 (InterPro:IPR019146); Has 166 Blast hits to 166 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 100; Fungi - 19; Plants - 35; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). )

HSP 1 Score: 147.1 bits (370), Expect = 8.6e-36
Identity = 72/117 (61.54%), Postives = 90/117 (76.92%), Query Frame = 0


Query: 3   PVYVPTNARKEVALFLKKISSLVPALHLVDVDVPLDFLCKDEHKLEQALAREFHISLSRT 62
           PV +P   +KE+  FLKK++S+VP LHLV+ DVPL  LCKD+ K E+AL REFHISL R 
Sbjct: 83  PVCIPPLPKKEIVCFLKKVASVVPHLHLVEADVPLSILCKDDQKFERALGREFHISLGRN 142

Query: 63  VPIRVHQIDSIVTMLRQKLQSQRR------KWETFVNDDLSRTFLSMEIITGGLMEV 114
           VP+RVHQI+S+++MLRQKLQ Q+R      KWE FVNDD +R+FLS+EI T GL EV
Sbjct: 143 VPLRVHQINSVISMLRQKLQLQKRYLIDFNKWEVFVNDDHTRSFLSLEITTSGLSEV 199

[Close]

BLAST of HG10009374 vs. TAIR 10
Match: AT5G51170.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0406 (InterPro:IPR019146); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 146.7 bits (369), Expect = 1.1e-35
Identity = 71/117 (60.68%), Postives = 90/117 (76.92%), Query Frame = 0


Query: 3   PVYVPTNARKEVALFLKKISSLVPALHLVDVDVPLDFLCKDEHKLEQALAREFHISLSRT 62
           PV +P   +KE+  FLKK++S+VP LHLV+ DVPL  LCKD+ K E+AL REFHISL R 
Sbjct: 83  PVCIPPLPKKEIVCFLKKVASVVPHLHLVEADVPLSILCKDDQKFERALGREFHISLGRN 142

Query: 63  VPIRVHQIDSIVTMLRQKLQSQRR------KWETFVNDDLSRTFLSMEIITGGLMEV 114
           VP+RVHQI+S+++MLRQKLQ Q+R      KWE FVNDD +R+FLS+EI T GL E+
Sbjct: 143 VPLRVHQINSVISMLRQKLQLQKRYLIDFNKWEVFVNDDHTRSFLSLEITTSGLSEI 199

The following BLAST results are available for this feature:

BLAST of HG10009374 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0055091.1	5.2e-51	89.17	U6 snRNA phosphodiesterase [Cucumis melo var. makuwa]	[more]
XP_038875355.1	5.8e-50	88.98	U6 snRNA phosphodiesterase isoform X2 [Benincasa hispida]	[more]
XP_038875354.1	5.8e-50	88.98	U6 snRNA phosphodiesterase isoform X1 [Benincasa hispida]	[more]
XP_008467330.1	1.3e-49	88.98	PREDICTED: U6 snRNA phosphodiesterase [Cucumis melo]	[more]
KAG6579639.1	2.9e-49	87.29	U6 snRNA phosphodiesterase, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of HG10009374 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q54W16	5.9e-05	28.97	U6 snRNA phosphodiesterase OS=Dictyostelium discoideum OX=44689 GN=DDB_G0279967 ...	[more]
Q6DEF6	1.7e-04	36.11	U6 snRNA phosphodiesterase OS=Danio rerio OX=7955 GN=usb1 PE=2 SV=1	[more]

BLAST of HG10009374 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UND6	2.5e-51	89.17	U6 snRNA phosphodiesterase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff...	[more]
A0A1S3CTB0	6.2e-50	88.98	U6 snRNA phosphodiesterase OS=Cucumis melo OX=3656 GN=LOC103504707 PE=3 SV=1	[more]
A0A6J1EQH7	1.2e-48	86.44	U6 snRNA phosphodiesterase OS=Cucurbita moschata OX=3662 GN=LOC111435686 PE=3 SV...	[more]
A0A6J1HYN3	2.6e-48	86.44	U6 snRNA phosphodiesterase OS=Cucurbita maxima OX=3661 GN=LOC111468846 PE=3 SV=1	[more]
A0A0A0KPH5	2.6e-48	87.29	U6 snRNA phosphodiesterase OS=Cucumis sativus OX=3659 GN=Csa_5G167730 PE=3 SV=1	[more]

BLAST of HG10009374 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G51170.2	8.6e-36	61.54	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G51170.1	1.1e-35	60.68	unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027521	U6 snRNA phosphodiesterase Usb1	PFAM	PF09749	HVSL	coord: 4..111 e-value: 1.4E-14 score: 54.1
IPR027521	U6 snRNA phosphodiesterase Usb1	PANTHER	PTHR13522	UNCHARACTERIZED	coord: 1..114
None	No IPR available	GENE3D	3.90.1140.10	Cyclic phosphodiesterase	coord: 1..116 e-value: 5.1E-17 score: 64.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10009374.1	HG10009374.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic
biological_process	GO:0034477	U6 snRNA 3'-end processing
cellular_component	GO:0005634	nucleus
molecular_function	GO:1990838	poly(U)-specific exoribonuclease activity, producing 3' uridine cyclic phosphate ends
molecular_function	GO:0004518	nuclease activity