HG10009361 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10009361
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	stellacyanin
Location	Chr06: 5094169 .. 5094384 (-)
RNA-Seq Expression	HG10009361
Synteny	HG10009361

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTTGCAAGTCAACGTCGAGAACAACCAATCATTCTCCCCCGCTGCCGCTCCTCAGCCACCGTCGCAGTCCGACGCCCTCCCTCGACCTTCTTCCAAAACTGACAACAACGGTGTTCCGAGCGCCTCCGCCGGCTTTGTGATCGGTGGAAAAGAGGCTCTTGCAATTTTCTTTGTGTGTTATGTCATATCCACATCCTTTATCGTGTTTTGA

mRNA sequence

ATGAAGTTGCAAGTCAACGTCGAGAACAACCAATCATTCTCCCCCGCTGCCGCTCCTCAGCCACCGTCGCAGTCCGACGCCCTCCCTCGACCTTCTTCCAAAACTGACAACAACGGTGTTCCGAGCGCCTCCGCCGGCTTTGTGATCGGTGGAAAAGAGGCTCTTGCAATTTTCTTTGTGTGTTATGTCATATCCACATCCTTTATCGTGTTTTGA

Coding sequence (CDS)

ATGAAGTTGCAAGTCAACGTCGAGAACAACCAATCATTCTCCCCCGCTGCCGCTCCTCAGCCACCGTCGCAGTCCGACGCCCTCCCTCGACCTTCTTCCAAAACTGACAACAACGGTGTTCCGAGCGCCTCCGCCGGCTTTGTGATCGGTGGAAAAGAGGCTCTTGCAATTTTCTTTGTGTGTTATGTCATATCCACATCCTTTATCGTGTTTTGA

Protein sequence

MKLQVNVENNQSFSPAAAPQPPSQSDALPRPSSKTDNNGVPSASAGFVIGGKEALAIFFVCYVISTSFIVF

Homology

[Close]

BLAST of HG10009361 vs. NCBI nr
Match: XP_038877141.1 (stellacyanin-like [Benincasa hispida])

HSP 1 Score: 126.3 bits (316), Expect = 1.0e-25
Identity = 66/71 (92.96%), Postives = 67/71 (94.37%), Query Frame = 0


Query: 1   MKLQVNVENNQSFSPAAAPQPPSQSDALPRPSSKTDNNGVPSASAGFVIGGKEALAIFFV 60
           MKLQVNVENNQSFSPA APQPP+QSD LPRPSSKTDNNGVPSASA FVIGGKEALAI FV
Sbjct: 114 MKLQVNVENNQSFSPATAPQPPTQSDTLPRPSSKTDNNGVPSASASFVIGGKEALAIVFV 173

Query: 61  CYVISTSFIVF 72
           CYVISTSFIVF
Sbjct: 174 CYVISTSFIVF 184

[Close]

BLAST of HG10009361 vs. NCBI nr
Match: XP_011654854.1 (blue copper protein [Cucumis sativus] >KGN50322.1 hypothetical protein Csa_000514 [Cucumis sativus])

HSP 1 Score: 109.8 bits (273), Expect = 1.0e-20
Identity = 62/72 (86.11%), Postives = 64/72 (88.89%), Query Frame = 0


Query: 1   MKLQVNVENNQSFSPAAAPQPP-SQSDALPRPSSKTDNNGVPSASAGFVIGGKEALAIFF 60
           MKLQVNVENNQSFSPAAAPQPP SQSDALPRPSSKTDNN VPSA+AG VIGG + LA  F
Sbjct: 117 MKLQVNVENNQSFSPAAAPQPPSSQSDALPRPSSKTDNNSVPSAAAGVVIGGNQGLAFLF 176

Query: 61  VCYVIST-SFIV 71
           VCYVIST SFIV
Sbjct: 177 VCYVISTLSFIV 188

[Close]

BLAST of HG10009361 vs. NCBI nr
Match: XP_022929168.1 (stellacyanin [Cucurbita moschata])

HSP 1 Score: 108.6 bits (270), Expect = 2.2e-20
Identity = 56/69 (81.16%), Postives = 59/69 (85.51%), Query Frame = 0


Query: 1   MKLQVNVENNQSFSPAAAPQPPSQSDALPRPSSKTDNNGVPSASAGFVIGGKEALAIFFV 60
           MK+QVNVENNQSFSPAAAPQPP QSD LPRPSSKTDN+GVPS S   VIGGKEAL I F 
Sbjct: 115 MKMQVNVENNQSFSPAAAPQPPPQSDGLPRPSSKTDNDGVPSGSTRLVIGGKEALGIVFA 174

Query: 61  CYVISTSFI 70
           CYVIS +FI
Sbjct: 175 CYVISLAFI 183

[Close]

BLAST of HG10009361 vs. NCBI nr
Match: KAG6579635.1 (Uclacyanin 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 107.1 bits (266), Expect = 6.5e-20
Identity = 55/69 (79.71%), Postives = 60/69 (86.96%), Query Frame = 0


Query: 1   MKLQVNVENNQSFSPAAAPQPPSQSDALPRPSSKTDNNGVPSASAGFVIGGKEALAIFFV 60
           MK+QVNVENNQSFSPAAAPQPP QS++LPRPSSKTDN+GVPS S   VIGGKEAL I F 
Sbjct: 117 MKMQVNVENNQSFSPAAAPQPPPQSNSLPRPSSKTDNDGVPSGSTRLVIGGKEALGIVFA 176

Query: 61  CYVISTSFI 70
           CYVIS +FI
Sbjct: 177 CYVISLAFI 185

[Close]

BLAST of HG10009361 vs. NCBI nr
Match: KAG7017090.1 (Uclacyanin 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 107.1 bits (266), Expect = 6.5e-20
Identity = 55/69 (79.71%), Postives = 60/69 (86.96%), Query Frame = 0


Query: 1   MKLQVNVENNQSFSPAAAPQPPSQSDALPRPSSKTDNNGVPSASAGFVIGGKEALAIFFV 60
           MK+QVNVENNQSFSPAAAPQPP QS++LPRPSSKTDN+GVPS S   VIGGKEAL I F 
Sbjct: 96  MKMQVNVENNQSFSPAAAPQPPPQSNSLPRPSSKTDNDGVPSGSTRLVIGGKEALGIVFA 155

Query: 61  CYVISTSFI 70
           CYVIS +FI
Sbjct: 156 CYVISLAFI 164

[Close]

BLAST of HG10009361 vs. ExPASy TrEMBL
Match: A0A0A0KPG5 (Phytocyanin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G167140 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 4.8e-21
Identity = 62/72 (86.11%), Postives = 64/72 (88.89%), Query Frame = 0


Query: 1   MKLQVNVENNQSFSPAAAPQPP-SQSDALPRPSSKTDNNGVPSASAGFVIGGKEALAIFF 60
           MKLQVNVENNQSFSPAAAPQPP SQSDALPRPSSKTDNN VPSA+AG VIGG + LA  F
Sbjct: 117 MKLQVNVENNQSFSPAAAPQPPSSQSDALPRPSSKTDNNSVPSAAAGVVIGGNQGLAFLF 176

Query: 61  VCYVIST-SFIV 71
           VCYVIST SFIV
Sbjct: 177 VCYVISTLSFIV 188

[Close]

BLAST of HG10009361 vs. ExPASy TrEMBL
Match: A0A6J1ERB5 (stellacyanin OS=Cucurbita moschata OX=3662 GN=LOC111435827 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.1e-20
Identity = 56/69 (81.16%), Postives = 59/69 (85.51%), Query Frame = 0


Query: 1   MKLQVNVENNQSFSPAAAPQPPSQSDALPRPSSKTDNNGVPSASAGFVIGGKEALAIFFV 60
           MK+QVNVENNQSFSPAAAPQPP QSD LPRPSSKTDN+GVPS S   VIGGKEAL I F 
Sbjct: 115 MKMQVNVENNQSFSPAAAPQPPPQSDGLPRPSSKTDNDGVPSGSTRLVIGGKEALGIVFA 174

Query: 61  CYVISTSFI 70
           CYVIS +FI
Sbjct: 175 CYVISLAFI 183

[Close]

BLAST of HG10009361 vs. ExPASy TrEMBL
Match: A0A6J1I0T8 (stellacyanin OS=Cucurbita maxima OX=3661 GN=LOC111468850 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 5.3e-20
Identity = 54/70 (77.14%), Postives = 59/70 (84.29%), Query Frame = 0


Query: 1   MKLQVNVENNQSFSPAAAPQPPSQSDALPRPSSKTDNNGVPSASAGFVIGGKEALAIFFV 60
           MK+QVNVENNQSFSPAAAPQPP QSD LPRPSSKTDN+G+PS S   VIGGKEAL I   
Sbjct: 115 MKMQVNVENNQSFSPAAAPQPPPQSDGLPRPSSKTDNDGIPSGSTRHVIGGKEALGIVLA 174

Query: 61  CYVISTSFIV 71
           CYVIS +FI+
Sbjct: 175 CYVISLAFII 184

[Close]

BLAST of HG10009361 vs. ExPASy TrEMBL
Match: A0A1S3AT20 (stellacyanin OS=Cucumis melo OX=3656 GN=LOC103482542 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 8.5e-18
Identity = 57/73 (78.08%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 1   MKLQVNVENNQSFSPAAAPQPP--SQSDALPRPSSKTDNNGVPSASAGFVIGGKEALAIF 60
           MKLQVNVENNQSFSPAAAPQPP  S SD LPRPSSKTDNN VP+ +AGFV+ GK+A AI 
Sbjct: 118 MKLQVNVENNQSFSPAAAPQPPPSSHSDDLPRPSSKTDNNSVPNTAAGFVMEGKQARAIL 177

Query: 61  FVCYVIST-SFIV 71
           FVC VIST SF+V
Sbjct: 178 FVCCVISTLSFMV 190

[Close]

BLAST of HG10009361 vs. ExPASy TrEMBL
Match: A0A5A7UGX7 (Stellacyanin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold231G00080 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.5e-17
Identity = 56/73 (76.71%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 1   MKLQVNVENNQSFSPAAAPQPP--SQSDALPRPSSKTDNNGVPSASAGFVIGGKEALAIF 60
           MKLQVNVENNQSFSPAAAPQPP  S SD LP+PSSKTDNN VP+ +AGFV+ GK+A AI 
Sbjct: 118 MKLQVNVENNQSFSPAAAPQPPPSSHSDDLPQPSSKTDNNSVPNTAAGFVMEGKQARAIL 177

Query: 61  FVCYVIST-SFIV 71
           FVC VIST SF+V
Sbjct: 178 FVCCVISTLSFMV 190

The following BLAST results are available for this feature:

BLAST of HG10009361 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877141.1	1.0e-25	92.96	stellacyanin-like [Benincasa hispida]	[more]
XP_011654854.1	1.0e-20	86.11	blue copper protein [Cucumis sativus] >KGN50322.1 hypothetical protein Csa_00051...	[more]
XP_022929168.1	2.2e-20	81.16	stellacyanin [Cucurbita moschata]	[more]
KAG6579635.1	6.5e-20	79.71	Uclacyanin 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7017090.1	6.5e-20	79.71	Uclacyanin 1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of HG10009361 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10009361 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPG5	4.8e-21	86.11	Phytocyanin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G167140...	[more]
A0A6J1ERB5	1.1e-20	81.16	stellacyanin OS=Cucurbita moschata OX=3662 GN=LOC111435827 PE=4 SV=1	[more]
A0A6J1I0T8	5.3e-20	77.14	stellacyanin OS=Cucurbita maxima OX=3661 GN=LOC111468850 PE=4 SV=1	[more]
A0A1S3AT20	8.5e-18	78.08	stellacyanin OS=Cucumis melo OX=3656 GN=LOC103482542 PE=4 SV=1	[more]
A0A5A7UGX7	2.5e-17	76.71	Stellacyanin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold231G00080 P...	[more]

BLAST of HG10009361 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..39

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10009361.1	HG10009361.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0046658	anchored component of plasma membrane
molecular_function	GO:0009055	electron transfer activity