HG10009319 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10009319
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Paired amphipathic helix protein Sin3-like 4
Location	Chr06: 4735813 .. 4736088 (-)
RNA-Seq Expression	HG10009319
Synteny	HG10009319

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAAGAAGGAAGTTCCCAGGAGTTAACCATTATTCATTCCATATCATATATCATGAGAGTGAAGGAAAGATTTCAAGAAAACAGAGAAAAGTATGAAGCTTTCATGCGAGTAATCAAAGATTTCAAGGCCCAAAGAATTAATCCTACGGAACTCTTTGCAACAATAATGGACTTGTTTCAAGACCACCCAGATCTTATTTTGGGCTTTGCCACTTTCTTGCCCAATGAACCCCTGGAGGATGATCAAGATCCACCTCCACACAAAAAATAA

mRNA sequence

ATGGCGAAAGAAGGAAGTTCCCAGGAGTTAACCATTATTCATTCCATATCATATATCATGAGAGTGAAGGAAAGATTTCAAGAAAACAGAGAAAAGTATGAAGCTTTCATGCGAGTAATCAAAGATTTCAAGGCCCAAAGAATTAATCCTACGGAACTCTTTGCAACAATAATGGACTTGTTTCAAGACCACCCAGATCTTATTTTGGGCTTTGCCACTTTCTTGCCCAATGAACCCCTGGAGGATGATCAAGATCCACCTCCACACAAAAAATAA

Coding sequence (CDS)

ATGGCGAAAGAAGGAAGTTCCCAGGAGTTAACCATTATTCATTCCATATCATATATCATGAGAGTGAAGGAAAGATTTCAAGAAAACAGAGAAAAGTATGAAGCTTTCATGCGAGTAATCAAAGATTTCAAGGCCCAAAGAATTAATCCTACGGAACTCTTTGCAACAATAATGGACTTGTTTCAAGACCACCCAGATCTTATTTTGGGCTTTGCCACTTTCTTGCCCAATGAACCCCTGGAGGATGATCAAGATCCACCTCCACACAAAAAATAA

Protein sequence

MAKEGSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDLFQDHPDLILGFATFLPNEPLEDDQDPPPHKK

Homology

[Close]

BLAST of HG10009319 vs. NCBI nr
Match: XP_022151192.1 (paired amphipathic helix protein Sin3-like 4 isoform X2 [Momordica charantia])

HSP 1 Score: 94.7 bits (234), Expect = 4.3e-16
Identity = 53/96 (55.21%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 1   MAKEGSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDL 60
           MA  GS+Q+LT   ++ Y+ RVK+ FQ+ REKYE F+ V+KDFKAQRI+   + A + DL
Sbjct: 31  MAGGGSAQKLTTNDALVYLKRVKDIFQDKREKYEDFLEVMKDFKAQRIDTAGVIARVKDL 90

Query: 61  FQDHPDLILGFATFLPNE-----PLEDDQDPPPHKK 92
           F+ H DLILGF TFLP       PLEDDQ  PP KK
Sbjct: 91  FKGHRDLILGFNTFLPKGYEITLPLEDDQ--PPQKK 124

[Close]

BLAST of HG10009319 vs. NCBI nr
Match: XP_022151193.1 (paired amphipathic helix protein Sin3-like 4 isoform X3 [Momordica charantia])

HSP 1 Score: 94.7 bits (234), Expect = 4.3e-16
Identity = 53/96 (55.21%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 1  MAKEGSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDL 60
          MA  GS+Q+LT   ++ Y+ RVK+ FQ+ REKYE F+ V+KDFKAQRI+   + A + DL
Sbjct: 1  MAGGGSAQKLTTNDALVYLKRVKDIFQDKREKYEDFLEVMKDFKAQRIDTAGVIARVKDL 60

Query: 61 FQDHPDLILGFATFLPNE-----PLEDDQDPPPHKK 92
          F+ H DLILGF TFLP       PLEDDQ  PP KK
Sbjct: 61 FKGHRDLILGFNTFLPKGYEITLPLEDDQ--PPQKK 94

[Close]

BLAST of HG10009319 vs. NCBI nr
Match: XP_022151191.1 (paired amphipathic helix protein Sin3-like 4 isoform X1 [Momordica charantia])

HSP 1 Score: 94.7 bits (234), Expect = 4.3e-16
Identity = 53/96 (55.21%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 1   MAKEGSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDL 60
           MA  GS+Q+LT   ++ Y+ RVK+ FQ+ REKYE F+ V+KDFKAQRI+   + A + DL
Sbjct: 31  MAGGGSAQKLTTNDALVYLKRVKDIFQDKREKYEDFLEVMKDFKAQRIDTAGVIARVKDL 90

Query: 61  FQDHPDLILGFATFLPNE-----PLEDDQDPPPHKK 92
           F+ H DLILGF TFLP       PLEDDQ  PP KK
Sbjct: 91  FKGHRDLILGFNTFLPKGYEITLPLEDDQ--PPQKK 124

[Close]

BLAST of HG10009319 vs. NCBI nr
Match: XP_022943143.1 (paired amphipathic helix protein Sin3-like 4 isoform X3 [Cucurbita moschata])

HSP 1 Score: 93.2 bits (230), Expect = 1.2e-15
Identity = 52/96 (54.17%), Postives = 65/96 (67.71%), Query Frame = 0


Query: 1  MAKEGSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDL 60
          MA  GS+Q+LT   ++ Y+ RVK+ FQ+ REKYE F+ V+KDFKAQRI+   +   + DL
Sbjct: 1  MAGGGSAQKLTTNDALVYLKRVKDIFQDKREKYEDFLEVMKDFKAQRIDTAGVIGRVKDL 60

Query: 61 FQDHPDLILGFATFLPNE-----PLEDDQDPPPHKK 92
          F+ H DLILGF TFLP       PLEDDQ  PP KK
Sbjct: 61 FKGHRDLILGFNTFLPKGYEITLPLEDDQ--PPQKK 94

[Close]

BLAST of HG10009319 vs. NCBI nr
Match: XP_022943142.1 (paired amphipathic helix protein Sin3-like 4 isoform X2 [Cucurbita moschata])

HSP 1 Score: 93.2 bits (230), Expect = 1.2e-15
Identity = 52/96 (54.17%), Postives = 65/96 (67.71%), Query Frame = 0


Query: 1   MAKEGSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDL 60
           MA  GS+Q+LT   ++ Y+ RVK+ FQ+ REKYE F+ V+KDFKAQRI+   +   + DL
Sbjct: 31  MAGGGSAQKLTTNDALVYLKRVKDIFQDKREKYEDFLEVMKDFKAQRIDTAGVIGRVKDL 90

Query: 61  FQDHPDLILGFATFLPNE-----PLEDDQDPPPHKK 92
           F+ H DLILGF TFLP       PLEDDQ  PP KK
Sbjct: 91  FKGHRDLILGFNTFLPKGYEITLPLEDDQ--PPQKK 124

[Close]

BLAST of HG10009319 vs. ExPASy Swiss-Prot
Match: Q9XIE1 (Paired amphipathic helix protein Sin3-like 5 OS=Arabidopsis thaliana OX=3702 GN=SNL5 PE=3 SV=3)

HSP 1 Score: 79.3 bits (194), Expect = 2.4e-14
Identity = 35/72 (48.61%), Postives = 54/72 (75.00%), Query Frame = 0


Query: 5   GSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDLFQDH 64
           G++  LT + +++Y+  VK+ FQ+N+EKYE F+ V+KDFKAQR++   + A + DLF+ +
Sbjct: 36  GTTGGLTTVDALTYLKAVKDMFQDNKEKYETFLGVMKDFKAQRVDTNGVIARVKDLFKGY 95

Query: 65  PDLILGFATFLP 77
            DL+LGF TFLP
Sbjct: 96  DDLLLGFNTFLP 107

[Close]

BLAST of HG10009319 vs. ExPASy Swiss-Prot
Match: O48686 (Paired amphipathic helix protein Sin3-like 3 OS=Arabidopsis thaliana OX=3702 GN=SNL3 PE=1 SV=3)

HSP 1 Score: 75.9 bits (185), Expect = 2.7e-13
Identity = 38/94 (40.43%), Postives = 61/94 (64.89%), Query Frame = 0


Query: 1  MAKEGSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDL 60
          M   GS+Q+LT   +++Y+  VK++FQ+ R KY+ F+ V+K+FK+QR++   +   + +L
Sbjct: 1  MVGGGSAQKLTTNDALAYLKAVKDKFQDQRGKYDEFLEVMKNFKSQRVDTAGVITRVKEL 60

Query: 61 FQDHPDLILGFATFLPNE---PLEDDQDPPPHKK 92
          F+ H +LILGF TFLP      L+ +   PP KK
Sbjct: 61 FKGHQELILGFNTFLPKGFEITLQPEDGQPPLKK 94

[Close]

BLAST of HG10009319 vs. ExPASy Swiss-Prot
Match: O04539 (Paired amphipathic helix protein Sin3-like 4 OS=Arabidopsis thaliana OX=3702 GN=SNL4 PE=3 SV=3)

HSP 1 Score: 75.9 bits (185), Expect = 2.7e-13
Identity = 41/96 (42.71%), Postives = 62/96 (64.58%), Query Frame = 0


Query: 1  MAKEGSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDL 60
          M    S+Q+LT   +++Y+  VK++FQ+ R+KY+ F+ V+KDFKAQR++ T +   + +L
Sbjct: 1  MVGGSSAQKLTTNDALAYLKAVKDKFQDKRDKYDEFLEVMKDFKAQRVDTTGVILRVKEL 60

Query: 61 FQDHPDLILGFATFLPN------EPLEDDQDPPPHK 91
          F+ + +LILGF TFLP        P EDDQ   P K
Sbjct: 61 FKGNRELILGFNTFLPKGFEITLRP-EDDQPAAPKK 95

[Close]

BLAST of HG10009319 vs. ExPASy Swiss-Prot
Match: Q9SRH9 (Paired amphipathic helix protein Sin3-like 1 OS=Arabidopsis thaliana OX=3702 GN=SNL1 PE=1 SV=2)

HSP 1 Score: 73.2 bits (178), Expect = 1.7e-12
Identity = 40/87 (45.98%), Postives = 56/87 (64.37%), Query Frame = 0


Query: 7   SQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDLFQDHPD 66
           SQ+LT   ++SY+  VKE FQ+ REKY+ F+ V+KDFKAQR +   + A + +LF+ H +
Sbjct: 50  SQKLTTNDALSYLREVKEMFQDQREKYDRFLEVMKDFKAQRTDTGGVIARVKELFKGHNN 109

Query: 67  LILGFATFLPNE---PLEDDQDPPPHK 91
           LI GF TFLP      L ++ D  P K
Sbjct: 110 LIYGFNTFLPKGYEITLIEEDDALPKK 136

[Close]

BLAST of HG10009319 vs. ExPASy Swiss-Prot
Match: Q9LFQ3 (Paired amphipathic helix protein Sin3-like 2 OS=Arabidopsis thaliana OX=3702 GN=SNL2 PE=1 SV=2)

HSP 1 Score: 71.2 bits (173), Expect = 6.6e-12
Identity = 36/87 (41.38%), Postives = 58/87 (66.67%), Query Frame = 0


Query: 6   SSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDLFQDHP 65
           ++Q+LT   +++Y+  VKE FQ+ R+KY+ F+ V+KDFKAQ+ + + + + + +LF+ H 
Sbjct: 44  NTQKLTTDDALTYLKEVKEMFQDQRDKYDMFLEVMKDFKAQKTDTSGVISRVKELFKGHN 103

Query: 66  DLILGFATFLPN--EPLEDDQDPPPHK 91
           +LI GF TFLP   E   DD + P  K
Sbjct: 104 NLIFGFNTFLPKGFEITLDDVEAPSKK 130

[Close]

BLAST of HG10009319 vs. ExPASy TrEMBL
Match: A0A6J1DDV1 (paired amphipathic helix protein Sin3-like 4 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111019172 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.1e-16
Identity = 53/96 (55.21%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 1   MAKEGSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDL 60
           MA  GS+Q+LT   ++ Y+ RVK+ FQ+ REKYE F+ V+KDFKAQRI+   + A + DL
Sbjct: 31  MAGGGSAQKLTTNDALVYLKRVKDIFQDKREKYEDFLEVMKDFKAQRIDTAGVIARVKDL 90

Query: 61  FQDHPDLILGFATFLPNE-----PLEDDQDPPPHKK 92
           F+ H DLILGF TFLP       PLEDDQ  PP KK
Sbjct: 91  FKGHRDLILGFNTFLPKGYEITLPLEDDQ--PPQKK 124

[Close]

BLAST of HG10009319 vs. ExPASy TrEMBL
Match: A0A6J1DCT7 (paired amphipathic helix protein Sin3-like 4 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111019172 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.1e-16
Identity = 53/96 (55.21%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 1   MAKEGSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDL 60
           MA  GS+Q+LT   ++ Y+ RVK+ FQ+ REKYE F+ V+KDFKAQRI+   + A + DL
Sbjct: 31  MAGGGSAQKLTTNDALVYLKRVKDIFQDKREKYEDFLEVMKDFKAQRIDTAGVIARVKDL 90

Query: 61  FQDHPDLILGFATFLPNE-----PLEDDQDPPPHKK 92
           F+ H DLILGF TFLP       PLEDDQ  PP KK
Sbjct: 91  FKGHRDLILGFNTFLPKGYEITLPLEDDQ--PPQKK 124

[Close]

BLAST of HG10009319 vs. ExPASy TrEMBL
Match: A0A6J1DBI6 (paired amphipathic helix protein Sin3-like 4 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111019172 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.1e-16
Identity = 53/96 (55.21%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 1  MAKEGSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDL 60
          MA  GS+Q+LT   ++ Y+ RVK+ FQ+ REKYE F+ V+KDFKAQRI+   + A + DL
Sbjct: 1  MAGGGSAQKLTTNDALVYLKRVKDIFQDKREKYEDFLEVMKDFKAQRIDTAGVIARVKDL 60

Query: 61 FQDHPDLILGFATFLPNE-----PLEDDQDPPPHKK 92
          F+ H DLILGF TFLP       PLEDDQ  PP KK
Sbjct: 61 FKGHRDLILGFNTFLPKGYEITLPLEDDQ--PPQKK 94

[Close]

BLAST of HG10009319 vs. ExPASy TrEMBL
Match: A0A6J1JXD3 (paired amphipathic helix protein Sin3-like 4 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111489162 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 6.0e-16
Identity = 52/96 (54.17%), Postives = 65/96 (67.71%), Query Frame = 0


Query: 1   MAKEGSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDL 60
           MA  GS+Q+LT   ++ Y+ RVK+ FQ+ REKYE F+ V+KDFKAQRI+   +   + DL
Sbjct: 31  MAGGGSAQKLTTNDALVYLKRVKDIFQDKREKYEDFLEVMKDFKAQRIDTAGVIGRVKDL 90

Query: 61  FQDHPDLILGFATFLPNE-----PLEDDQDPPPHKK 92
           F+ H DLILGF TFLP       PLEDDQ  PP KK
Sbjct: 91  FKGHRDLILGFNTFLPKGYEITLPLEDDQ--PPQKK 124

[Close]

BLAST of HG10009319 vs. ExPASy TrEMBL
Match: A0A6J1FQW7 (paired amphipathic helix protein Sin3-like 4 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111447961 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 6.0e-16
Identity = 52/96 (54.17%), Postives = 65/96 (67.71%), Query Frame = 0


Query: 1   MAKEGSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDL 60
           MA  GS+Q+LT   ++ Y+ RVK+ FQ+ REKYE F+ V+KDFKAQRI+   +   + DL
Sbjct: 31  MAGGGSAQKLTTNDALVYLKRVKDIFQDKREKYEDFLEVMKDFKAQRIDTAGVIGRVKDL 90

Query: 61  FQDHPDLILGFATFLPNE-----PLEDDQDPPPHKK 92
           F+ H DLILGF TFLP       PLEDDQ  PP KK
Sbjct: 91  FKGHRDLILGFNTFLPKGYEITLPLEDDQ--PPQKK 124

[Close]

BLAST of HG10009319 vs. TAIR 10
Match: AT1G59890.1 (SIN3-like 5 )

HSP 1 Score: 79.3 bits (194), Expect = 1.7e-15
Identity = 35/72 (48.61%), Postives = 54/72 (75.00%), Query Frame = 0


Query: 5   GSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDLFQDH 64
           G++  LT + +++Y+  VK+ FQ+N+EKYE F+ V+KDFKAQR++   + A + DLF+ +
Sbjct: 36  GTTGGLTTVDALTYLKAVKDMFQDNKEKYETFLGVMKDFKAQRVDTNGVIARVKDLFKGY 95

Query: 65  PDLILGFATFLP 77
            DL+LGF TFLP
Sbjct: 96  DDLLLGFNTFLP 107

[Close]

BLAST of HG10009319 vs. TAIR 10
Match: AT1G59890.3 (SIN3-like 5 )

HSP 1 Score: 79.3 bits (194), Expect = 1.7e-15
Identity = 35/72 (48.61%), Postives = 54/72 (75.00%), Query Frame = 0


Query: 5   GSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDLFQDH 64
           G++  LT + +++Y+  VK+ FQ+N+EKYE F+ V+KDFKAQR++   + A + DLF+ +
Sbjct: 36  GTTGGLTTVDALTYLKAVKDMFQDNKEKYETFLGVMKDFKAQRVDTNGVIARVKDLFKGY 95

Query: 65  PDLILGFATFLP 77
            DL+LGF TFLP
Sbjct: 96  DDLLLGFNTFLP 107

[Close]

BLAST of HG10009319 vs. TAIR 10
Match: AT1G59890.2 (SIN3-like 5 )

HSP 1 Score: 79.3 bits (194), Expect = 1.7e-15
Identity = 35/72 (48.61%), Postives = 54/72 (75.00%), Query Frame = 0


Query: 5   GSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDLFQDH 64
           G++  LT + +++Y+  VK+ FQ+N+EKYE F+ V+KDFKAQR++   + A + DLF+ +
Sbjct: 36  GTTGGLTTVDALTYLKAVKDMFQDNKEKYETFLGVMKDFKAQRVDTNGVIARVKDLFKGY 95

Query: 65  PDLILGFATFLP 77
            DL+LGF TFLP
Sbjct: 96  DDLLLGFNTFLP 107

[Close]

BLAST of HG10009319 vs. TAIR 10
Match: AT1G59890.4 (SIN3-like 5 )

HSP 1 Score: 79.3 bits (194), Expect = 1.7e-15
Identity = 35/72 (48.61%), Postives = 54/72 (75.00%), Query Frame = 0


Query: 5   GSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDLFQDH 64
           G++  LT + +++Y+  VK+ FQ+N+EKYE F+ V+KDFKAQR++   + A + DLF+ +
Sbjct: 36  GTTGGLTTVDALTYLKAVKDMFQDNKEKYETFLGVMKDFKAQRVDTNGVIARVKDLFKGY 95

Query: 65  PDLILGFATFLP 77
            DL+LGF TFLP
Sbjct: 96  DDLLLGFNTFLP 107

[Close]

BLAST of HG10009319 vs. TAIR 10
Match: AT1G70060.1 (SIN3-like 4 )

HSP 1 Score: 75.9 bits (185), Expect = 1.9e-14
Identity = 41/96 (42.71%), Postives = 62/96 (64.58%), Query Frame = 0


Query: 1  MAKEGSSQELTIIHSISYIMRVKERFQENREKYEAFMRVIKDFKAQRINPTELFATIMDL 60
          M    S+Q+LT   +++Y+  VK++FQ+ R+KY+ F+ V+KDFKAQR++ T +   + +L
Sbjct: 1  MVGGSSAQKLTTNDALAYLKAVKDKFQDKRDKYDEFLEVMKDFKAQRVDTTGVILRVKEL 60

Query: 61 FQDHPDLILGFATFLPN------EPLEDDQDPPPHK 91
          F+ + +LILGF TFLP        P EDDQ   P K
Sbjct: 61 FKGNRELILGFNTFLPKGFEITLRP-EDDQPAAPKK 95

The following BLAST results are available for this feature:

BLAST of HG10009319 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151192.1	4.3e-16	55.21	paired amphipathic helix protein Sin3-like 4 isoform X2 [Momordica charantia]	[more]
XP_022151193.1	4.3e-16	55.21	paired amphipathic helix protein Sin3-like 4 isoform X3 [Momordica charantia]	[more]
XP_022151191.1	4.3e-16	55.21	paired amphipathic helix protein Sin3-like 4 isoform X1 [Momordica charantia]	[more]
XP_022943143.1	1.2e-15	54.17	paired amphipathic helix protein Sin3-like 4 isoform X3 [Cucurbita moschata]	[more]
XP_022943142.1	1.2e-15	54.17	paired amphipathic helix protein Sin3-like 4 isoform X2 [Cucurbita moschata]	[more]

BLAST of HG10009319 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XIE1	2.4e-14	48.61	Paired amphipathic helix protein Sin3-like 5 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
O48686	2.7e-13	40.43	Paired amphipathic helix protein Sin3-like 3 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
O04539	2.7e-13	42.71	Paired amphipathic helix protein Sin3-like 4 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9SRH9	1.7e-12	45.98	Paired amphipathic helix protein Sin3-like 1 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9LFQ3	6.6e-12	41.38	Paired amphipathic helix protein Sin3-like 2 OS=Arabidopsis thaliana OX=3702 GN=...	[more]

BLAST of HG10009319 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DDV1	2.1e-16	55.21	paired amphipathic helix protein Sin3-like 4 isoform X1 OS=Momordica charantia O...	[more]
A0A6J1DCT7	2.1e-16	55.21	paired amphipathic helix protein Sin3-like 4 isoform X2 OS=Momordica charantia O...	[more]
A0A6J1DBI6	2.1e-16	55.21	paired amphipathic helix protein Sin3-like 4 isoform X3 OS=Momordica charantia O...	[more]
A0A6J1JXD3	6.0e-16	54.17	paired amphipathic helix protein Sin3-like 4 isoform X1 OS=Cucurbita maxima OX=3...	[more]
A0A6J1FQW7	6.0e-16	54.17	paired amphipathic helix protein Sin3-like 4 isoform X1 OS=Cucurbita moschata OX...	[more]

BLAST of HG10009319 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G59890.1	1.7e-15	48.61	SIN3-like 5	[more]
AT1G59890.3	1.7e-15	48.61	SIN3-like 5	[more]
AT1G59890.2	1.7e-15	48.61	SIN3-like 5	[more]
AT1G59890.4	1.7e-15	48.61	SIN3-like 5	[more]
AT1G70060.1	1.9e-14	42.71	SIN3-like 4	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036600	Paired amphipathic helix superfamily	GENE3D	1.20.1160.11	Paired amphipathic helix	coord: 15..76 e-value: 4.9E-20 score: 73.7
IPR036600	Paired amphipathic helix superfamily	SUPERFAMILY	47762	PAH2 domain	coord: 7..77
IPR003822	Paired amphipathic helix	PFAM	PF02671	PAH	coord: 31..75 e-value: 2.3E-12 score: 46.8
IPR003822	Paired amphipathic helix	PROSITE	PS51477	PAH	coord: 8..78 score: 16.220562
IPR039774	Transcriptional regulatory protein Sin3-like	PANTHER	PTHR12346	SIN3B-RELATED	coord: 6..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10009319.1	HG10009319.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003714	transcription corepressor activity