HG10009253 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10009253
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	40S ribosomal protein S13
Location	Chr06: 4032663 .. 4033380 (+)
RNA-Seq Expression	HG10009253
Synteny	HG10009253

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCGTATGCACAGTCGTGGGTTGGTTTCTAATCTCCGCCGATTTGTTTCTCATTCACTTCGATTTCGTCTGTTGATTTCATTTGTTGAAATTCTTCCCAACCATTGACTCTATTTTCTCATTTTCAGTAAGGGTATCTCAGCCTCTGCATTGCCTTACAAGAGGACGCCGCCAAGTTGGCTCAAGATCTCTTCTACGGATGTAAGTATGCTACGGGAAGTTCTGAGCTTTGAGAATAACTTCCAGGATTTTGTTATTTCTTTTATAATAGTCATTTTTTCCCTATTGTAATTTGAACTTAGGTTGAAGATAATATCTGCAAGTTTGCGAAGAAGGGCTTGACCCCTTCTCAAATTGGTGTGATTCTTCGTGATTCTCACGGGATTGCCCAGGTCAGAAGTGTTACTGGAAACAAAATCTTGCGTATTCTTAAGGCCCATGGTATTCTTCTTTTCCCTGACGCCAAGCATTTCCATTTAAGTTGCTTAGGTGCATTTTTTCACTGTAGTTTGGCATGTACTATCTAGGATTGGCACCCGAGATTCCAGAGGATCTCTATCACTTAATCAAGAAAGCCGTTTCCATCCGTAAGCATTTGGAGAGGAACAGGAAGGACAAGGACTCCAAGTTCAGATTGATTCTTGTGGAGAGCAGAATTCACAGGCTTGCCCGTTACTATAAGAAAACCAAGAAGCTTCCACCAGTTTGGAAATAG

mRNA sequence

ATGGGTCGTATGCACAGTCGTGGTAAGGGTATCTCAGCCTCTGCATTGCCTTACAAGAGGACGCCGCCAAGTTGGCTCAAGATCTCTTCTACGGATGTTGAAGATAATATCTGCAAGTTTGCGAAGAAGGGCTTGACCCCTTCTCAAATTGGTGTGATTCTTCGTGATTCTCACGGGATTGCCCAGGTCAGAAGTGTTACTGGAAACAAAATCTTGCGTATTCTTAAGGCCCATGGATTGGCACCCGAGATTCCAGAGGATCTCTATCACTTAATCAAGAAAGCCGTTTCCATCCGTAAGCATTTGGAGAGGAACAGGAAGGACAAGGACTCCAAGTTCAGATTGATTCTTGTGGAGAGCAGAATTCACAGGCTTGCCCGTTACTATAAGAAAACCAAGAAGCTTCCACCAGTTTGGAAATAG

Coding sequence (CDS)

ATGGGTCGTATGCACAGTCGTGGTAAGGGTATCTCAGCCTCTGCATTGCCTTACAAGAGGACGCCGCCAAGTTGGCTCAAGATCTCTTCTACGGATGTTGAAGATAATATCTGCAAGTTTGCGAAGAAGGGCTTGACCCCTTCTCAAATTGGTGTGATTCTTCGTGATTCTCACGGGATTGCCCAGGTCAGAAGTGTTACTGGAAACAAAATCTTGCGTATTCTTAAGGCCCATGGATTGGCACCCGAGATTCCAGAGGATCTCTATCACTTAATCAAGAAAGCCGTTTCCATCCGTAAGCATTTGGAGAGGAACAGGAAGGACAAGGACTCCAAGTTCAGATTGATTCTTGTGGAGAGCAGAATTCACAGGCTTGCCCGTTACTATAAGAAAACCAAGAAGCTTCCACCAGTTTGGAAATAG

Protein sequence

MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

Homology

[Close]

BLAST of HG10009253 vs. NCBI nr
Match: XP_004147576.1 (40S ribosomal protein S13 [Cucumis sativus] >XP_008437146.1 PREDICTED: 40S ribosomal protein S13-like [Cucumis melo] >KGN50199.1 hypothetical protein Csa_000544 [Cucumis sativus])

HSP 1 Score: 281.2 bits (718), Expect = 4.9e-72
Identity = 139/140 (99.29%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQV+SVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWK 141
           RIHRLARYYKKTKKLPPVWK
Sbjct: 121 RIHRLARYYKKTKKLPPVWK 140

[Close]

BLAST of HG10009253 vs. NCBI nr
Match: KAG7036084.1 (40S ribosomal protein S13, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 280.4 bits (716), Expect = 8.4e-72
Identity = 139/140 (99.29%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVRSVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWK 141
           RIHRLARYYKKTKKLPPVWK
Sbjct: 121 RIHRLARYYKKTKKLPPVWK 140

[Close]

BLAST of HG10009253 vs. NCBI nr
Match: XP_022922396.1 (40S ribosomal protein S13-like [Cucurbita moschata] >XP_022958210.1 40S ribosomal protein S13-like [Cucurbita moschata] >XP_022970202.1 40S ribosomal protein S13-like [Cucurbita maxima] >XP_022996440.1 40S ribosomal protein S13-like [Cucurbita maxima] >XP_023534749.1 40S ribosomal protein S13-like [Cucurbita pepo subsp. pepo] >KAG6579439.1 40S ribosomal protein S13, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016913.1 40S ribosomal protein S13 [Cucurbita argyrosperma subsp. argyrosperma] >KAG6606139.1 40S ribosomal protein S13, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 280.4 bits (716), Expect = 8.4e-72
Identity = 139/140 (99.29%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVRSVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWK 141
           RIHRLARYYKKTKKLPPVWK
Sbjct: 121 RIHRLARYYKKTKKLPPVWK 140

[Close]

BLAST of HG10009253 vs. NCBI nr
Match: XP_038874585.1 (40S ribosomal protein S13-like [Benincasa hispida])

HSP 1 Score: 279.3 bits (713), Expect = 1.9e-71
Identity = 138/140 (98.57%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQV+SVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWK 141
           RIHRLARYYKKTKKLPPVWK
Sbjct: 121 RIHRLARYYKKTKKLPPVWK 140

[Close]

BLAST of HG10009253 vs. NCBI nr
Match: XP_022157239.1 (40S ribosomal protein S13-like [Momordica charantia])

HSP 1 Score: 278.1 bits (710), Expect = 4.2e-71
Identity = 137/140 (97.86%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSTDV+DNICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQV+SVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWK 141
           RIHRLARYYKKTKKLPPVWK
Sbjct: 121 RIHRLARYYKKTKKLPPVWK 140

[Close]

BLAST of HG10009253 vs. ExPASy Swiss-Prot
Match: P62302 (40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 1.4e-72
Identity = 135/140 (96.43%), Postives = 138/140 (98.57%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGIS+SALPYKRTPPSWLKISS DVE+NICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISSSALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQV SVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVNSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWK 141
           RIHRLARYYKKTKKLPPVWK
Sbjct: 121 RIHRLARYYKKTKKLPPVWK 140

[Close]

BLAST of HG10009253 vs. ExPASy Swiss-Prot
Match: P59224 (40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 5.3e-69
Identity = 128/140 (91.43%), Postives = 136/140 (97.14%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKR+ PSWLK +S DV+++ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
            QV+SVTG+KILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWK 141
           RIHRLARYYKKTKKLPPVWK
Sbjct: 121 RIHRLARYYKKTKKLPPVWK 140

[Close]

BLAST of HG10009253 vs. ExPASy Swiss-Prot
Match: P46298 (40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 9.1e-69
Identity = 128/140 (91.43%), Postives = 136/140 (97.14%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGR+HS+GKGIS+SALPY+RT PSWLKISS DV++ ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRLHSKGKGISSSALPYRRTAPSWLKISSQDVDETICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQV+SVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLER RKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERFRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWK 141
           RIHRLARYYKKTKKLPPVWK
Sbjct: 121 RIHRLARYYKKTKKLPPVWK 140

[Close]

BLAST of HG10009253 vs. ExPASy Swiss-Prot
Match: P59223 (40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 2.0e-68
Identity = 127/140 (90.71%), Postives = 135/140 (96.43%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKR+ PSWLK +  DV+++ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
            QV+SVTG+KILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWK 141
           RIHRLARYYKKTKKLPPVWK
Sbjct: 121 RIHRLARYYKKTKKLPPVWK 140

[Close]

BLAST of HG10009253 vs. ExPASy Swiss-Prot
Match: Q69UI1 (40S ribosomal protein S13-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0117300 PE=1 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 3.3e-63
Identity = 119/140 (85.00%), Postives = 129/140 (92.14%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGIS+SALPYKRTPPSWLK +++DVE+ I K AKKG  PSQIGV+LRD HGI
Sbjct: 1   MGRMHSRGKGISSSALPYKRTPPSWLKTAASDVEEMIMKAAKKGQMPSQIGVVLRDQHGI 60

Query: 61  AQVRSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
             V+SVTG+KILRILKAHGLAPEIPEDLY LIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PLVKSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWK 141
           RIHRLARYYK+TKKLPP WK
Sbjct: 121 RIHRLARYYKRTKKLPPTWK 140

[Close]

BLAST of HG10009253 vs. ExPASy TrEMBL
Match: A0A0A0KMS8 (Ribosomal_S13_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G158550 PE=3 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 2.4e-72
Identity = 139/140 (99.29%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQV+SVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWK 141
           RIHRLARYYKKTKKLPPVWK
Sbjct: 121 RIHRLARYYKKTKKLPPVWK 140

[Close]

BLAST of HG10009253 vs. ExPASy TrEMBL
Match: A0A1S3ATA6 (40S ribosomal protein S13-like OS=Cucumis melo OX=3656 GN=LOC103482656 PE=3 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 2.4e-72
Identity = 139/140 (99.29%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQV+SVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWK 141
           RIHRLARYYKKTKKLPPVWK
Sbjct: 121 RIHRLARYYKKTKKLPPVWK 140

[Close]

BLAST of HG10009253 vs. ExPASy TrEMBL
Match: A0A6J1HYG9 (40S ribosomal protein S13-like OS=Cucurbita maxima OX=3661 GN=LOC111469163 PE=3 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 4.1e-72
Identity = 139/140 (99.29%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVRSVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWK 141
           RIHRLARYYKKTKKLPPVWK
Sbjct: 121 RIHRLARYYKKTKKLPPVWK 140

[Close]

BLAST of HG10009253 vs. ExPASy TrEMBL
Match: A0A6J1E411 (40S ribosomal protein S13-like OS=Cucurbita moschata OX=3662 GN=LOC111430404 PE=3 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 4.1e-72
Identity = 139/140 (99.29%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQVRSVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWK 141
           RIHRLARYYKKTKKLPPVWK
Sbjct: 121 RIHRLARYYKKTKKLPPVWK 140

[Close]

BLAST of HG10009253 vs. ExPASy TrEMBL
Match: A0A6J1DVX9 (40S ribosomal protein S13-like OS=Momordica charantia OX=3673 GN=LOC111023995 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.0e-71
Identity = 137/140 (97.86%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKISSTDV+DNICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
           AQV+SVTG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWK 141
           RIHRLARYYKKTKKLPPVWK
Sbjct: 121 RIHRLARYYKKTKKLPPVWK 140

[Close]

BLAST of HG10009253 vs. TAIR 10
Match: AT4G00100.1 (ribosomal protein S13A )

HSP 1 Score: 261.5 bits (667), Expect = 3.8e-70
Identity = 128/140 (91.43%), Postives = 136/140 (97.14%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKR+ PSWLK +S DV+++ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
            QV+SVTG+KILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWK 141
           RIHRLARYYKKTKKLPPVWK
Sbjct: 121 RIHRLARYYKKTKKLPPVWK 140

[Close]

BLAST of HG10009253 vs. TAIR 10
Match: AT3G60770.1 (Ribosomal protein S13/S15 )

HSP 1 Score: 259.6 bits (662), Expect = 1.4e-69
Identity = 127/140 (90.71%), Postives = 135/140 (96.43%), Query Frame = 0


Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKR+ PSWLK +  DV+++ICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVES 120
            QV+SVTG+KILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVES
Sbjct: 61  PQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWK 141
           RIHRLARYYKKTKKLPPVWK
Sbjct: 121 RIHRLARYYKKTKKLPPVWK 140

The following BLAST results are available for this feature:

BLAST of HG10009253 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147576.1	4.9e-72	99.29	40S ribosomal protein S13 [Cucumis sativus] >XP_008437146.1 PREDICTED: 40S ribos...	[more]
KAG7036084.1	8.4e-72	99.29	40S ribosomal protein S13, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022922396.1	8.4e-72	99.29	40S ribosomal protein S13-like [Cucurbita moschata] >XP_022958210.1 40S ribosoma...	[more]
XP_038874585.1	1.9e-71	98.57	40S ribosomal protein S13-like [Benincasa hispida]	[more]
XP_022157239.1	4.2e-71	97.86	40S ribosomal protein S13-like [Momordica charantia]	[more]

BLAST of HG10009253 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P62302	1.4e-72	96.43	40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1	[more]
P59224	5.3e-69	91.43	40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1	[more]
P46298	9.1e-69	91.43	40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1	[more]
P59223	2.0e-68	90.71	40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1	[more]
Q69UI1	3.3e-63	85.00	40S ribosomal protein S13-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g011...	[more]

BLAST of HG10009253 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMS8	2.4e-72	99.29	Ribosomal_S13_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G15...	[more]
A0A1S3ATA6	2.4e-72	99.29	40S ribosomal protein S13-like OS=Cucumis melo OX=3656 GN=LOC103482656 PE=3 SV=1	[more]
A0A6J1HYG9	4.1e-72	99.29	40S ribosomal protein S13-like OS=Cucurbita maxima OX=3661 GN=LOC111469163 PE=3 ...	[more]
A0A6J1E411	4.1e-72	99.29	40S ribosomal protein S13-like OS=Cucurbita moschata OX=3662 GN=LOC111430404 PE=...	[more]
A0A6J1DVX9	2.0e-71	97.86	40S ribosomal protein S13-like OS=Momordica charantia OX=3673 GN=LOC111023995 PE...	[more]

BLAST of HG10009253 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G00100.1	3.8e-70	91.43	ribosomal protein S13A	[more]
AT3G60770.1	1.4e-69	90.71	Ribosomal protein S13/S15	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012606	Ribosomal protein S13/S15, N-terminal	SMART	SM01386	Ribosomal_S13_N_2	coord: 1..60 e-value: 9.1E-40 score: 148.1
IPR012606	Ribosomal protein S13/S15, N-terminal	PFAM	PF08069	Ribosomal_S13_N	coord: 1..60 e-value: 2.7E-31 score: 107.4
IPR000589	Ribosomal protein S15	SMART	SM01387	Ribosomal_S15_2	coord: 70..140 e-value: 9.2E-9 score: 45.1
IPR000589	Ribosomal protein S15	PFAM	PF00312	Ribosomal_S15	coord: 74..134 e-value: 3.3E-14 score: 52.8
IPR000589	Ribosomal protein S15	PROSITE	PS00362	RIBOSOMAL_S15	coord: 98..128
IPR000589	Ribosomal protein S15	CDD	cd00353	Ribosomal_S15p_S13e	coord: 70..140 e-value: 1.00005E-24 score: 88.329
None	No IPR available	GENE3D	4.10.860.130		coord: 35..82 e-value: 2.4E-29 score: 102.8
None	No IPR available	GENE3D	1.10.287.10		coord: 83..140 e-value: 4.7E-34 score: 118.5
None	No IPR available	PANTHER	PTHR11885:SF22	40S RIBOSOMAL PROTEIN S13	coord: 1..140
IPR023029	Ribosomal protein S15P	PANTHER	PTHR11885	RIBOSOMAL PROTEIN S15P/S13E	coord: 1..140
IPR023029	Ribosomal protein S15P	HAMAP	MF_01343_A	Ribosomal_S15_A	coord: 3..140 score: 28.490362
IPR009068	S15/NS1, RNA-binding	SUPERFAMILY	47060	S15/NS1 RNA-binding domain	coord: 66..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10009253.1	HG10009253.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005840	ribosome
molecular_function	GO:0070181	small ribosomal subunit rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome