HG10009238 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10009238
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	protein LITTLE ZIPPER 2-like
Location	Chr06: 3803149 .. 3803510 (-)
RNA-Seq Expression	HG10009238
Synteny	HG10009238

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCATCAGTGCAACACAGAGTGTTCTGTTTCATACAATTCAGAGTTCCAAGAACAGGAGAAGTTTAAAAAGATCCAAACTTCAAGTTCTGAGGCTTACTAGGTTGCTTTCTTACACAACCCCATTTCACCTTTTTGTTAGTTTTTTAGGGGACTTTTGTTTTGTCTTAGCAGGAGGAGATGTGAAGAGAAGCTGGGGAAGGATATTGAGCTGAAGAATCTGCAGCTATATCTGGAGAATCAGACCATAATTGAAGAGAATGAGAAGCTAAGAGAGAAAGCCAATATCCTTCATCAAGAGAATTTGGCTTTAATGACCGAGTTTCAGAAAAAATTCCCACATTTGGAACAGAGAAAGTGA

mRNA sequence

ATGTGCATCAGTGCAACACAGAGTGTTCTGTTTCATACAATTCAGAGTTCCAAGAACAGGAGAAGTTTAAAAAGATCCAAACTTCAAGTTCTGAGGCTTACTAGGAGGAGATGTGAAGAGAAGCTGGGGAAGGATATTGAGCTGAAGAATCTGCAGCTATATCTGGAGAATCAGACCATAATTGAAGAGAATGAGAAGCTAAGAGAGAAAGCCAATATCCTTCATCAAGAGAATTTGGCTTTAATGACCGAGTTTCAGAAAAAATTCCCACATTTGGAACAGAGAAAGTGA

Coding sequence (CDS)

ATGTGCATCAGTGCAACACAGAGTGTTCTGTTTCATACAATTCAGAGTTCCAAGAACAGGAGAAGTTTAAAAAGATCCAAACTTCAAGTTCTGAGGCTTACTAGGAGGAGATGTGAAGAGAAGCTGGGGAAGGATATTGAGCTGAAGAATCTGCAGCTATATCTGGAGAATCAGACCATAATTGAAGAGAATGAGAAGCTAAGAGAGAAAGCCAATATCCTTCATCAAGAGAATTTGGCTTTAATGACCGAGTTTCAGAAAAAATTCCCACATTTGGAACAGAGAAAGTGA

Protein sequence

MCISATQSVLFHTIQSSKNRRSLKRSKLQVLRLTRRRCEEKLGKDIELKNLQLYLENQTIIEENEKLREKANILHQENLALMTEFQKKFPHLEQRK

Homology

[Close]

BLAST of HG10009238 vs. NCBI nr
Match: KAE8647881.1 (hypothetical protein Csa_000025 [Cucumis sativus])

HSP 1 Score: 167.9 bits (424), Expect = 4.2e-38
Identity = 91/97 (93.81%), Postives = 93/97 (95.88%), Query Frame = 0


Query: 1  MCISATQSVLFHTIQSSKNRRSLKRSKLQVLRLT-RRRCEEKLGKDIELKNLQLYLENQT 60
          MC+SATQSVLFHTIQSSKNRRS KRS  QVLRLT RRRCEEKLGKDIELKNLQLYLENQT
Sbjct: 1  MCVSATQSVLFHTIQSSKNRRSSKRSNFQVLRLTSRRRCEEKLGKDIELKNLQLYLENQT 60

Query: 61 IIEENEKLREKANILHQENLALMTEFQKKFPHLEQRK 97
          IIEENEKLREKANILHQENLAL+TEFQKKFPHLEQRK
Sbjct: 61 IIEENEKLREKANILHQENLALLTEFQKKFPHLEQRK 97

[Close]

BLAST of HG10009238 vs. NCBI nr
Match: XP_022922429.1 (protein LITTLE ZIPPER 1-like [Cucurbita moschata])

HSP 1 Score: 164.9 bits (416), Expect = 3.5e-37
Identity = 86/96 (89.58%), Postives = 92/96 (95.83%), Query Frame = 0


Query: 1  MCISATQSVLFHTIQSSKNRRSLKRSKLQVLRLTRRRCEEKLGKDIELKNLQLYLENQTI 60
          MCISATQS+LFH IQ+SKNRR  KRSKLQVLRLTRRRCEEKLGKDIELKNLQLYL+NQTI
Sbjct: 1  MCISATQSILFHQIQTSKNRRRSKRSKLQVLRLTRRRCEEKLGKDIELKNLQLYLKNQTI 60

Query: 61 IEENEKLREKANILHQENLALMTEFQKKFPHLEQRK 97
          I+EN+KLREKANILHQEN+ALMTEFQKKFPHL QRK
Sbjct: 61 IKENDKLREKANILHQENIALMTEFQKKFPHLNQRK 96

[Close]

BLAST of HG10009238 vs. NCBI nr
Match: KAG6579456.1 (Protein LITTLE ZIPPER 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016928.1 Protein LITTLE ZIPPER 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 161.8 bits (408), Expect = 3.0e-36
Identity = 84/96 (87.50%), Postives = 91/96 (94.79%), Query Frame = 0


Query: 1  MCISATQSVLFHTIQSSKNRRSLKRSKLQVLRLTRRRCEEKLGKDIELKNLQLYLENQTI 60
          MCI ATQS+LFH IQ+SKN+R  KRSKLQVLRLTRRRCEEKLGKDIELKNLQLYL+NQTI
Sbjct: 1  MCIRATQSILFHQIQTSKNKRRSKRSKLQVLRLTRRRCEEKLGKDIELKNLQLYLKNQTI 60

Query: 61 IEENEKLREKANILHQENLALMTEFQKKFPHLEQRK 97
          I+EN+KLREKANILHQEN+ALMTEFQKKFPHL QRK
Sbjct: 61 IKENDKLREKANILHQENIALMTEFQKKFPHLNQRK 96

[Close]

BLAST of HG10009238 vs. NCBI nr
Match: XP_023534553.1 (protein LITTLE ZIPPER 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 149.8 bits (377), Expect = 1.2e-32
Identity = 82/97 (84.54%), Postives = 87/97 (89.69%), Query Frame = 0


Query: 1  MCISATQSVLFHTIQSSKNRRSLKRSKLQVLRLTRRRC-EEKLGKDIELKNLQLYLENQT 60
          MCI+ATQ +LFH I +SKNRR LKRSKLQV RL+RRR  EEK GKDIELKNLQLYLENQT
Sbjct: 1  MCITATQRILFHQIHTSKNRRRLKRSKLQVQRLSRRRSFEEKQGKDIELKNLQLYLENQT 60

Query: 61 IIEENEKLREKANILHQENLALMTEFQKKFPHLEQRK 97
          IIEENEKLREKANILHQENLALMTEF KKFPH +QRK
Sbjct: 61 IIEENEKLREKANILHQENLALMTEFHKKFPHFDQRK 97

[Close]

BLAST of HG10009238 vs. NCBI nr
Match: KAG7036101.1 (Protein LITTLE ZIPPER 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 146.7 bits (369), Expect = 1.0e-31
Identity = 81/98 (82.65%), Postives = 86/98 (87.76%), Query Frame = 0


Query: 1  MCISATQSVLFHTIQSSKNRRSLKRSKLQVLRLT--RRRCEEKLGKDIELKNLQLYLENQ 60
          MCI+ATQ +LFH I +SKNRR LKRSKLQV RL+  RR  EEK GKDIELKNLQLYLENQ
Sbjct: 1  MCITATQRILFHQIHTSKNRRRLKRSKLQVQRLSSRRRSFEEKQGKDIELKNLQLYLENQ 60

Query: 61 TIIEENEKLREKANILHQENLALMTEFQKKFPHLEQRK 97
          TIIEENEKLREKANILHQENLALMTEF KKFPH +QRK
Sbjct: 61 TIIEENEKLREKANILHQENLALMTEFHKKFPHFDQRK 98

[Close]

BLAST of HG10009238 vs. ExPASy Swiss-Prot
Match: Q9LZX5 (Protein LITTLE ZIPPER 2 OS=Arabidopsis thaliana OX=3702 GN=ZPR2 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.8e-07
Identity = 32/69 (46.38%), Postives = 49/69 (71.01%), Query Frame = 0


Query: 21 RSLKRSKLQVLRLTRRRCEEKLGKDIELKNLQLYLENQTIIEENEKLREKANILHQENLA 80
          +S  ++ L++L LTRRR   K  K++E++NL+L++ENQ+II ENE L++KA +LH EN A
Sbjct: 28 KSKTQTHLRILNLTRRRRLLKEQKEMEMRNLKLFVENQSIIRENEALKKKALLLHHENNA 87

Query: 81 LMTEFQKKF 90
          L      K+
Sbjct: 88 LFALLHPKY 96

[Close]

BLAST of HG10009238 vs. ExPASy Swiss-Prot
Match: F4IG60 (Protein LITTLE ZIPPER 1 OS=Arabidopsis thaliana OX=3702 GN=ZPR1 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 8.8e-07
Identity = 38/91 (41.76%), Postives = 57/91 (62.64%), Query Frame = 0


Query: 1   MCISATQSVLFHTIQSSKNRRSL---KRSKLQVLRLTRRRCEEKLGKDIELKNLQLYLEN 60
           MC+S+++     T   +  R  L    +S +++ RL+RRR   +  K +E+ NL+LY+EN
Sbjct: 44  MCLSSSE-----TFSDTPTRLVLYLKTQSHVRIPRLSRRRRMWREEKKMEMINLKLYVEN 103

Query: 61  QTIIEENEKLREKANILHQENLALMTEFQKK 89
           Q II ENEKL++KA +LHQEN  L +  Q K
Sbjct: 104 QNIIRENEKLKKKALLLHQENKTLFSLLQTK 129

[Close]

BLAST of HG10009238 vs. ExPASy TrEMBL
Match: A0A0A0KKF8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G157390 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 8.2e-40
Identity = 91/96 (94.79%), Postives = 93/96 (96.88%), Query Frame = 0


Query: 1  MCISATQSVLFHTIQSSKNRRSLKRSKLQVLRLTRRRCEEKLGKDIELKNLQLYLENQTI 60
          MC+SATQSVLFHTIQSSKNRRS KRS  QVLRLTRRRCEEKLGKDIELKNLQLYLENQTI
Sbjct: 1  MCVSATQSVLFHTIQSSKNRRSSKRSNFQVLRLTRRRCEEKLGKDIELKNLQLYLENQTI 60

Query: 61 IEENEKLREKANILHQENLALMTEFQKKFPHLEQRK 97
          IEENEKLREKANILHQENLAL+TEFQKKFPHLEQRK
Sbjct: 61 IEENEKLREKANILHQENLALLTEFQKKFPHLEQRK 96

[Close]

BLAST of HG10009238 vs. ExPASy TrEMBL
Match: A0A6J1E3C5 (protein LITTLE ZIPPER 1-like OS=Cucurbita moschata OX=3662 GN=LOC111430426 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.7e-37
Identity = 86/96 (89.58%), Postives = 92/96 (95.83%), Query Frame = 0


Query: 1  MCISATQSVLFHTIQSSKNRRSLKRSKLQVLRLTRRRCEEKLGKDIELKNLQLYLENQTI 60
          MCISATQS+LFH IQ+SKNRR  KRSKLQVLRLTRRRCEEKLGKDIELKNLQLYL+NQTI
Sbjct: 1  MCISATQSILFHQIQTSKNRRRSKRSKLQVLRLTRRRCEEKLGKDIELKNLQLYLKNQTI 60

Query: 61 IEENEKLREKANILHQENLALMTEFQKKFPHLEQRK 97
          I+EN+KLREKANILHQEN+ALMTEFQKKFPHL QRK
Sbjct: 61 IKENDKLREKANILHQENIALMTEFQKKFPHLNQRK 96

[Close]

BLAST of HG10009238 vs. ExPASy TrEMBL
Match: A0A6J1E319 (protein LITTLE ZIPPER 2-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111026023 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.1e-31
Identity = 80/95 (84.21%), Postives = 86/95 (90.53%), Query Frame = 0


Query: 1   MCISATQSVLFHTIQSSKNRRSLKRSKLQVLRLTRRRC-EEKLGKDIELKNLQLYLENQT 60
           MCISAT+S  FH I +SKNRR LKRSKLQV RLTRRRC EEK+GKDIELKNLQLYLENQT
Sbjct: 17  MCISATESSPFHQIHTSKNRRRLKRSKLQVQRLTRRRCTEEKVGKDIELKNLQLYLENQT 76

Query: 61  IIEENEKLREKANILHQENLALMTEFQKKFPHLEQ 95
           IIEENEKLRE+ANILHQENLALMTE QKKF HL++
Sbjct: 77  IIEENEKLRERANILHQENLALMTELQKKFQHLDR 111

[Close]

BLAST of HG10009238 vs. ExPASy TrEMBL
Match: A0A6J1DZF5 (protein LITTLE ZIPPER 2-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111026023 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.6e-30
Identity = 80/96 (83.33%), Postives = 86/96 (89.58%), Query Frame = 0


Query: 1   MCISATQSVLFHTIQSSKNRRSLKRSKLQVLRLT-RRRC-EEKLGKDIELKNLQLYLENQ 60
           MCISAT+S  FH I +SKNRR LKRSKLQV RLT RRRC EEK+GKDIELKNLQLYLENQ
Sbjct: 17  MCISATESSPFHQIHTSKNRRRLKRSKLQVQRLTSRRRCTEEKVGKDIELKNLQLYLENQ 76

Query: 61  TIIEENEKLREKANILHQENLALMTEFQKKFPHLEQ 95
           TIIEENEKLRE+ANILHQENLALMTE QKKF HL++
Sbjct: 77  TIIEENEKLRERANILHQENLALMTELQKKFQHLDR 112

[Close]

BLAST of HG10009238 vs. ExPASy TrEMBL
Match: A0A6J1B3H9 (protein LITTLE ZIPPER 1-like OS=Herrania umbratica OX=108875 GN=LOC110423759 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 3.5e-22
Identity = 58/79 (73.42%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 16 SSKNRRSLKRSKLQVLRLTRRRCEEKLGKDIELKNLQLYLENQTIIEENEKLREKANILH 75
          SSK R   K+SK+Q+ RL+R+RCEEK+ KD+EL NL+LYLENQ+IIEENEKLR+KAN+LH
Sbjct: 14 SSKRRHRSKQSKVQIYRLSRKRCEEKVEKDMELLNLKLYLENQSIIEENEKLRKKANLLH 73

Query: 76 QENLALMTEFQKKFPHLEQ 95
          QENLALM+EFQKKFPHL++
Sbjct: 74 QENLALMSEFQKKFPHLDR 92

[Close]

BLAST of HG10009238 vs. TAIR 10
Match: AT3G60890.1 (protein binding )

HSP 1 Score: 56.6 bits (135), Expect = 1.3e-08
Identity = 32/69 (46.38%), Postives = 49/69 (71.01%), Query Frame = 0


Query: 21 RSLKRSKLQVLRLTRRRCEEKLGKDIELKNLQLYLENQTIIEENEKLREKANILHQENLA 80
          +S  ++ L++L LTRRR   K  K++E++NL+L++ENQ+II ENE L++KA +LH EN A
Sbjct: 28 KSKTQTHLRILNLTRRRRLLKEQKEMEMRNLKLFVENQSIIRENEALKKKALLLHHENNA 87

Query: 81 LMTEFQKKF 90
          L      K+
Sbjct: 88 LFALLHPKY 96

[Close]

BLAST of HG10009238 vs. TAIR 10
Match: AT2G45450.1 (protein binding )

HSP 1 Score: 54.3 bits (129), Expect = 6.3e-08
Identity = 38/91 (41.76%), Postives = 57/91 (62.64%), Query Frame = 0


Query: 1   MCISATQSVLFHTIQSSKNRRSL---KRSKLQVLRLTRRRCEEKLGKDIELKNLQLYLEN 60
           MC+S+++     T   +  R  L    +S +++ RL+RRR   +  K +E+ NL+LY+EN
Sbjct: 44  MCLSSSE-----TFSDTPTRLVLYLKTQSHVRIPRLSRRRRMWREEKKMEMINLKLYVEN 103

Query: 61  QTIIEENEKLREKANILHQENLALMTEFQKK 89
           Q II ENEKL++KA +LHQEN  L +  Q K
Sbjct: 104 QNIIRENEKLKKKALLLHQENKTLFSLLQTK 129

[Close]

BLAST of HG10009238 vs. TAIR 10
Match: AT3G60890.2 (protein binding )

HSP 1 Score: 52.0 bits (123), Expect = 3.1e-07
Identity = 32/70 (45.71%), Postives = 49/70 (70.00%), Query Frame = 0


Query: 21 RSLKRSKLQVLRLT-RRRCEEKLGKDIELKNLQLYLENQTIIEENEKLREKANILHQENL 80
          +S  ++ L++L LT RRR   K  K++E++NL+L++ENQ+II ENE L++KA +LH EN 
Sbjct: 28 KSKTQTHLRILNLTSRRRRLLKEQKEMEMRNLKLFVENQSIIRENEALKKKALLLHHENN 87

Query: 81 ALMTEFQKKF 90
          AL      K+
Sbjct: 88 ALFALLHPKY 97

The following BLAST results are available for this feature:

BLAST of HG10009238 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647881.1	4.2e-38	93.81	hypothetical protein Csa_000025 [Cucumis sativus]	[more]
XP_022922429.1	3.5e-37	89.58	protein LITTLE ZIPPER 1-like [Cucurbita moschata]	[more]
KAG6579456.1	3.0e-36	87.50	Protein LITTLE ZIPPER 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG701...	[more]
XP_023534553.1	1.2e-32	84.54	protein LITTLE ZIPPER 2-like [Cucurbita pepo subsp. pepo]	[more]
KAG7036101.1	1.0e-31	82.65	Protein LITTLE ZIPPER 2, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of HG10009238 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZX5	1.8e-07	46.38	Protein LITTLE ZIPPER 2 OS=Arabidopsis thaliana OX=3702 GN=ZPR2 PE=1 SV=1	[more]
F4IG60	8.8e-07	41.76	Protein LITTLE ZIPPER 1 OS=Arabidopsis thaliana OX=3702 GN=ZPR1 PE=1 SV=1	[more]

BLAST of HG10009238 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKF8	8.2e-40	94.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G157390 PE=4 SV=1	[more]
A0A6J1E3C5	1.7e-37	89.58	protein LITTLE ZIPPER 1-like OS=Cucurbita moschata OX=3662 GN=LOC111430426 PE=4 ...	[more]
A0A6J1E319	1.1e-31	84.21	protein LITTLE ZIPPER 2-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A6J1DZF5	2.6e-30	83.33	protein LITTLE ZIPPER 2-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A6J1B3H9	3.5e-22	73.42	protein LITTLE ZIPPER 1-like OS=Herrania umbratica OX=108875 GN=LOC110423759 PE=...	[more]

BLAST of HG10009238 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G60890.1	1.3e-08	46.38	protein binding	[more]
AT2G45450.1	6.3e-08	41.76	protein binding	[more]
AT3G60890.2	3.1e-07	45.71	protein binding	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 57..84
None	No IPR available	PANTHER	PTHR33601:SF21	OS09G0520500 PROTEIN	coord: 1..93
IPR039312	Protein LITTLE ZIPPER	PANTHER	PTHR33601	PROTEIN LITTLE ZIPPER 4	coord: 1..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10009238.1	HG10009238.1	mRNA