HG10009170 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10009170
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr06: 3155999 .. 3158107 (+)
RNA-Seq Expression	HG10009170
Synteny	HG10009170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGCTCAGTGGACTTTGACTTTTGTGGCTTCATTTGGAGGAAGTCTTGGTCTTTGGAACCTAAATGTGGAGTGAAATTTATTAAACTTGAAGGAAATTTCCGATTCCAGGTTGGATTAAATGCTTAGTCAAAAAAGAAAAAAAAAAAAGAAGAGAGGGGATTAAATGCTGCAGCATTGAATTTAGTCGGTCAATATATTGAAGGTAACATGACTAATATTAATGGATTTATTATCGAAACTATATTTATTAAATTTTTATAATTGAAAGTTGAGAAATTTTAAAAAATAAATAAATAATAGAAATTATTTACATAAAATAATAAAATTTTTAGATAAATCTATCAGTGATAGATGCTAATAAAAGTCTATCAATATTTATTAGTATTTTTATTATTATTTTCTGTTTTACATTTTTATGTGTGAAACTTTCCCTTGAAAAGTTTTATGAAGATTAATTTGTATGCTACACTACAACAAAATACTGTATATAGATTAAACAAGTTGGAAGTCTAAAAAGTTAAGTTTCTGAATTTTTTTTTTTAAAAAATACACACTTTGAATTGAGAAAACAAAACGTGTAAAATTGACTCAAGTTTTTAATGAACTTTGATTTAAAACATATTAAAATATCATTTTTTGGTCTCCCAATTTAGATCAGCTTTAGAATAACTTAAAAATAAAGATTTAATAAGATTTTGTTTTAAAGATGTTGAAAGTGTAGATATTCAAACTTCAAATCTTTTGATAAATGACACCATGTTTCACTTGAGTTATGCTCAGATTGACAATTAGTCAAAATAAATGAAAGCTTGAATATCCACGAACTATCGCGGTCTATCATTAATAGACAATAAAAGTTTTCTATATTTGTAAATAGTTTGATATTTTTTTTCTCTTCATAGTAATTTTTTTTTTTTTTTTAATTCAAGATAAGATTAAAGTTGTAAATATAGAGAAATTGGAAAATTTAAGATAGAGAAAGGAGACTCGTTTTCGAAAGAGATAAAAAGAGACTTTTCTAAAGTGAATTTTGTCGAGAGAAAGACTTTTCTATTTTTGAAAAAGGTGGTTGATATAAGTACTCAATCAATATATATATATATATAGTAAAAAGATGAGAAAAAAATATTAAATTATTTACAAATTTTTTTTATTTGTAAATTTTTTTTTTATTTGTAAATAGTTTTGATCATTTTTCTATATTTAAAAACAACCATAAAAAAAATATAATATTTACCTAAGTTTATGAATGTGAATAACAGTTATAATTATCTAATATATTAATGAAATACCTAATATATATATTTGATTTGCTATACTATCGATATGTGTCATCGATATTATTTGATTTGCTATACTATTGATATGTGTCATCGATATATCGATTATGAGTGTTGATATACCAAAAATACATCTAATATATACTTGATATGAATGCTTATATATCCTAATATATATTATTTCTTTTTATTGTGTATATTTTCTCTTATTACATTAAGTTGTGTCATTATTTAAAGATTTTAGATATGAAATGTCTTTTTTTATAATCCAGTCGGCTGTCTTCCATACTTGATATGAATTTTAATATATGGTAAAAGGCCAAACATAATGGAAAATTATTTTAGTATTACAGGAAAACAAATGATTTGGTATATGGAGAAAAGAGTATTATTCATTATCCATTAAAAATATCATCTCTGCACATCAGTAAATAATGTGCTAATTTTCCAACCCCATCCAGATCTTATTACAAATTACACCATATATTATATAGAGTATGTATGGGAATTATTACTCTTATTCAGGTAACGTTTTGATTTCTTTCTTTTTTATATGATATATGGTTTTAAGGGCAGAAGACGACTCTATAGTTGGTTCCTCCCGGGCAAGTGAATGTGCTGGTTGCATCATCTTTTGGATAACTGTATGCATCTGGACACCGATCCTTGAAGAACCTAGAGTAAAACGTCGGCCCGCAGTTGCTGTTCGGGGCGGTGCAGCAGTATTGATCGCCACCGAACACGGTGCACGGGTTGTTGCACCCTCCAGGAGCCCTAAGCTCGTTCGGGCACTGTCCGTTGATGTCTGCAGTGCACCTTCATAA

mRNA sequence

ATGAAAGCTCAGTGGACTTTGACTTTTGTGGCTTCATTTGGAGGAAGTCTTGGTCTTTGGAACCTAAATGTGGAGGCAGAAGACGACTCTATAGTTGGTTCCTCCCGGGCAAGTGAATGTGCTGGTTGCATCATCTTTTGGATAACTGTATGCATCTGGACACCGATCCTTGAAGAACCTAGAGTAAAACGTCGGCCCGCAGTTGCTGTTCGGGGCGGTGCAGCAGTATTGATCGCCACCGAACACGGTGCACGGGTTGTTGCACCCTCCAGGAGCCCTAAGCTCGTTCGGGCACTGTCCGTTGATGTCTGCAGTGCACCTTCATAA

Coding sequence (CDS)

ATGAAAGCTCAGTGGACTTTGACTTTTGTGGCTTCATTTGGAGGAAGTCTTGGTCTTTGGAACCTAAATGTGGAGGCAGAAGACGACTCTATAGTTGGTTCCTCCCGGGCAAGTGAATGTGCTGGTTGCATCATCTTTTGGATAACTGTATGCATCTGGACACCGATCCTTGAAGAACCTAGAGTAAAACGTCGGCCCGCAGTTGCTGTTCGGGGCGGTGCAGCAGTATTGATCGCCACCGAACACGGTGCACGGGTTGTTGCACCCTCCAGGAGCCCTAAGCTCGTTCGGGCACTGTCCGTTGATGTCTGCAGTGCACCTTCATAA

Protein sequence

MKAQWTLTFVASFGGSLGLWNLNVEAEDDSIVGSSRASECAGCIIFWITVCIWTPILEEPRVKRRPAVAVRGGAAVLIATEHGARVVAPSRSPKLVRALSVDVCSAPS

Homology

[Close]

BLAST of HG10009170 vs. NCBI nr
Match: KAB8092894.1 (hypothetical protein EE612_019464 [Oryza sativa] >BAS85614.1 Os03g0663600 [Oryza sativa Japonica Group])

HSP 1 Score: 65.1 bits (157), Expect = 4.3e-07
Identity = 42/83 (50.60%), Postives = 51/83 (61.45%), Query Frame = 0


Query: 26  AEDDSIVGSSRASECAGCIIFWITVCIWTPILEEPRVKRRPAVA-VRGGAAVLIATEHGA 85
           AEDD +VG+ RASE A  ++  + V +    LEE RV  R AV   R GAAVL+  EH A
Sbjct: 38  AEDDLVVGAGRASEGARLVVLGVAVGVRAEPLEELRVVGRAAVVRRRAGAAVLVLLEHRA 97

Query: 86  RVVAPSRSPKLVRALSVDVCSAP 108
           RVVAP+  P+L RAL   V  AP
Sbjct: 98  RVVAPAGRPQLARALPRHVRLAP 120

[Close]

BLAST of HG10009170 vs. NCBI nr
Match: KAF3448529.1 (hypothetical protein FNV43_RR09242 [Rhamnella rubrinervis])

HSP 1 Score: 64.7 bits (156), Expect = 5.6e-07
Identity = 33/83 (39.76%), Postives = 49/83 (59.04%), Query Frame = 0


Query: 26  AEDDSIVGSSRASECAGCIIFWITVCIWTPILEEPRVKRRPAVAVRGGAAVLIATEHGAR 85
           A+ + ++ + R  + A  II WIT+ IW P LEEPR        +   AA+ I  +H  R
Sbjct: 7   AKHNPVISACRTCKSACRIILWITISIWAPRLEEPRETCGSTATLALCAAIFIGFKHRTR 66

Query: 86  VVAPSRSPKLVRALSVDVCSAPS 109
           V+ PS  P+LVRALS+++  AP+
Sbjct: 67  VMTPSGGPQLVRALSLEISGAPN 89

[Close]

BLAST of HG10009170 vs. NCBI nr
Match: RLM85493.1 (hypothetical protein C2845_PM04G30420 [Panicum miliaceum])

HSP 1 Score: 57.4 bits (137), Expect = 8.9e-05
Identity = 38/83 (45.78%), Postives = 47/83 (56.63%), Query Frame = 0


Query: 24  VEAEDDSIVGSSRASECAGCIIFWITVCIWTPILEEPRVKRRP-AVAVRGGAAVLIATEH 83
           + AEDD +VGS  A E A  ++ W+ V +    LE PRV  RP AV  R  AAV +  EH
Sbjct: 11  LRAEDDLVVGSGGAGEGACGVVLWVAVGVRALPLEVPRVVGRPAAVGRRADAAVHVLLEH 70

Query: 84  GARVVAPSRSPKLVRALSVDVCS 106
           GARVVA    P+L  A  V V +
Sbjct: 71  GARVVARPVLPQLRGAPRVHVAA 93

[Close]

BLAST of HG10009170 vs. ExPASy TrEMBL
Match: A0A0P0W106 (Os03g0663600 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0663600 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.1e-07
Identity = 42/83 (50.60%), Postives = 51/83 (61.45%), Query Frame = 0


Query: 26  AEDDSIVGSSRASECAGCIIFWITVCIWTPILEEPRVKRRPAVA-VRGGAAVLIATEHGA 85
           AEDD +VG+ RASE A  ++  + V +    LEE RV  R AV   R GAAVL+  EH A
Sbjct: 38  AEDDLVVGAGRASEGARLVVLGVAVGVRAEPLEELRVVGRAAVVRRRAGAAVLVLLEHRA 97

Query: 86  RVVAPSRSPKLVRALSVDVCSAP 108
           RVVAP+  P+L RAL   V  AP
Sbjct: 98  RVVAPAGRPQLARALPRHVRLAP 120

[Close]

BLAST of HG10009170 vs. ExPASy TrEMBL
Match: A0A3L6QP23 (Uncharacterized protein OS=Panicum miliaceum OX=4540 GN=C2845_PM04G30420 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 4.3e-05
Identity = 38/83 (45.78%), Postives = 47/83 (56.63%), Query Frame = 0


Query: 24  VEAEDDSIVGSSRASECAGCIIFWITVCIWTPILEEPRVKRRP-AVAVRGGAAVLIATEH 83
           + AEDD +VGS  A E A  ++ W+ V +    LE PRV  RP AV  R  AAV +  EH
Sbjct: 11  LRAEDDLVVGSGGAGEGACGVVLWVAVGVRALPLEVPRVVGRPAAVGRRADAAVHVLLEH 70

Query: 84  GARVVAPSRSPKLVRALSVDVCS 106
           GARVVA    P+L  A  V V +
Sbjct: 71  GARVVARPVLPQLRGAPRVHVAA 93

The following BLAST results are available for this feature:

BLAST of HG10009170 vs. NCBI nr


Match Name	E-value	Identity	Description
KAB8092894.1	4.3e-07	50.60	hypothetical protein EE612_019464 [Oryza sativa] >BAS85614.1 Os03g0663600 [Oryza...	[more]
KAF3448529.1	5.6e-07	39.76	hypothetical protein FNV43_RR09242 [Rhamnella rubrinervis]	[more]
RLM85493.1	8.9e-05	45.78	hypothetical protein C2845_PM04G30420 [Panicum miliaceum]	[more]

BLAST of HG10009170 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10009170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0P0W106	2.1e-07	50.60	Os03g0663600 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0663600 PE...	[more]
A0A3L6QP23	4.3e-05	45.78	Uncharacterized protein OS=Panicum miliaceum OX=4540 GN=C2845_PM04G30420 PE=4 SV...	[more]

BLAST of HG10009170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10009170.1	HG10009170.1	mRNA