HG10009127 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10009127
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Retrotrans_gag domain-containing protein
Location	Chr06: 2768337 .. 2768755 (-)
RNA-Seq Expression	HG10009127
Synteny	HG10009127

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACTGATGTATTCAACGAGTCTATAGCCTTGGCCGACAGGCCCGGGTAATCTTTGAAATTTCATCGTGATGGGGATAGATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGGTCCGCCGCTGAGGACGCTTCTCCAGACTACAATTCGGACGTCGAGGACGCCCGATTCTCAAGCTGGGCTCTTCCCGGTTCGCTCGCCGTTACTAGGGGAATCCTTGTAAGTTTCTTTTCCTCCGCTTATTGATATGCTTAAACTCAGCGGGTAGTCCCGCCTGACCTGGGGTCGCGTCGAGAGCGTCGTCCTTTGGGAGACGGCGTTCAGAGGGTCGGTGTAGGAGTCCACAAGGAGGCGGCGTCAAATTCGCTGCGAAGCAAAAAAAAAAGGTAA

mRNA sequence

ATGGCTACTGATGTATTCAACGAGTCTATAGCCTTGGCCGACAGGCCCGGTAAGCGCGAGTCATCAGCTCGGTCCGCCGCTGAGGACGCTTCTCCAGACTACAATTCGGACGTCGAGGACGCCCGATTCTCAAGCTGGGCTCTTCCCGGTTCGCTCGCCGTTACTAGGGGAATCCTTCGGGTAGTCCCGCCTGACCTGGGGTCGCGTCGAGAGCGTCGTCCTTTGGGAGACGGCGTTCAGAGGGTCGGTGTAGGAGTCCACAAGGAGGCGGCGTCAAATTCGCTGCGAAGCAAAAAAAAAAGGTAA

Coding sequence (CDS)

ATGGCTACTGATGTATTCAACGAGTCTATAGCCTTGGCCGACAGGCCCGGTAAGCGCGAGTCATCAGCTCGGTCCGCCGCTGAGGACGCTTCTCCAGACTACAATTCGGACGTCGAGGACGCCCGATTCTCAAGCTGGGCTCTTCCCGGTTCGCTCGCCGTTACTAGGGGAATCCTTCGGGTAGTCCCGCCTGACCTGGGGTCGCGTCGAGAGCGTCGTCCTTTGGGAGACGGCGTTCAGAGGGTCGGTGTAGGAGTCCACAAGGAGGCGGCGTCAAATTCGCTGCGAAGCAAAAAAAAAAGGTAA

Protein sequence

MATDVFNESIALADRPGKRESSARSAAEDASPDYNSDVEDARFSSWALPGSLAVTRGILRVVPPDLGSRRERRPLGDGVQRVGVGVHKEAASNSLRSKKKR

Homology

[Close]

BLAST of HG10009127 vs. NCBI nr
Match: KEH17348.1 (hypothetical protein MTR_0021s0160 [Medicago truncatula])

HSP 1 Score: 89.4 bits (220), Expect = 2.0e-14
Identity = 45/53 (84.91%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 23  ARSAAEDASPDYNSDVEDARFSSWALPGSLAVTRGILRVVPPDLGSRRERRPL 76
           ARS AEDASPDYNSD   ARFSSWA+PGSLAVTRGILRVVPPDLGSR +RR L
Sbjct: 231 ARSVAEDASPDYNSDGTAARFSSWAVPGSLAVTRGILRVVPPDLGSRSKRRAL 283

[Close]

BLAST of HG10009127 vs. NCBI nr
Match: BAD07869.1 (hypothetical protein [Oryza sativa Japonica Group])

HSP 1 Score: 88.2 bits (217), Expect = 4.4e-14
Identity = 48/68 (70.59%), Postives = 51/68 (75.00%), Query Frame = 0


Query: 23 ARSAAEDASPDYNSDVEDARFSSWALPGSLAVTRGILRVVPPDLGSRRERRPLGDGVQRV 82
          ARS AEDASPDYNSD   ARFSSWA PGSLAVTRGILRVVPPDLGSR E   LG   +R 
Sbjct: 18 ARSVAEDASPDYNSDGAAARFSSWASPGSLAVTRGILRVVPPDLGSRSEAFALGPTGRRG 77

Query: 83 GVGVHKEA 91
           + V  +A
Sbjct: 78 RIAVFLDA 85

[Close]

BLAST of HG10009127 vs. NCBI nr
Match: QCE14242.1 (hypothetical protein DEO72_LG11g1241 [Vigna unguiculata])

HSP 1 Score: 86.7 bits (213), Expect = 1.3e-13
Identity = 44/53 (83.02%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 23  ARSAAEDASPDYNSDVEDARFSSWALPGSLAVTRGILRVVPPDLGSRRERRPL 76
           ARS AEDASPDYNS+   ARFSSWA PGSLAVTRGILRVVPPDLGSR +RR L
Sbjct: 77  ARSVAEDASPDYNSNGTAARFSSWAAPGSLAVTRGILRVVPPDLGSRSKRRAL 129

[Close]

BLAST of HG10009127 vs. NCBI nr
Match: TKR97773.1 (hypothetical protein D5086_0000209730 [Populus alba])

HSP 1 Score: 86.3 bits (212), Expect = 1.7e-13
Identity = 43/49 (87.76%), Postives = 44/49 (89.80%), Query Frame = 0


Query: 23  ARSAAEDASPDYNSDVEDARFSSWALPGSLAVTRGILRVVPPDLGSRRE 72
           A SAAEDASPDYNSD   ARFSSWA PGSLAVTRGILRVVPPDLGS+RE
Sbjct: 104 AWSAAEDASPDYNSDAAGARFSSWAFPGSLAVTRGILRVVPPDLGSQRE 152

[Close]

BLAST of HG10009127 vs. NCBI nr
Match: KAG4975684.1 (hypothetical protein JHK86_035158 [Glycine max] >KAG4975691.1 hypothetical protein JHK86_035165 [Glycine max] >KAG5070637.1 hypothetical protein JHK84_057291 [Glycine max] >KAG5070640.1 hypothetical protein JHK84_057294 [Glycine max] >KAG5070660.1 hypothetical protein JHK84_057314 [Glycine max])

HSP 1 Score: 79.7 bits (195), Expect = 1.6e-11
Identity = 40/50 (80.00%), Postives = 41/50 (82.00%), Query Frame = 0


Query: 23  ARSAAEDASPDYNSDVEDARFSSWALPGSLAVTRGILRVVPPDLGSRRER 73
           ARSA EDASPDYNSD E  RFS WA PGSLAVT+GILRV PPDL SR ER
Sbjct: 615 ARSATEDASPDYNSDAEGDRFSWWAFPGSLAVTKGILRVAPPDLRSRWER 664

[Close]

BLAST of HG10009127 vs. ExPASy TrEMBL
Match: A0A072TKH6 (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MTR_0021s0160 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 9.6e-15
Identity = 45/53 (84.91%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 23  ARSAAEDASPDYNSDVEDARFSSWALPGSLAVTRGILRVVPPDLGSRRERRPL 76
           ARS AEDASPDYNSD   ARFSSWA+PGSLAVTRGILRVVPPDLGSR +RR L
Sbjct: 231 ARSVAEDASPDYNSDGTAARFSSWAVPGSLAVTRGILRVVPPDLGSRSKRRAL 283

[Close]

BLAST of HG10009127 vs. ExPASy TrEMBL
Match: Q6Z8F0 (Uncharacterized protein P0459B01.18 OS=Oryza sativa subsp. japonica OX=39947 GN=P0459B01.18 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.1e-14
Identity = 48/68 (70.59%), Postives = 51/68 (75.00%), Query Frame = 0


Query: 23 ARSAAEDASPDYNSDVEDARFSSWALPGSLAVTRGILRVVPPDLGSRRERRPLGDGVQRV 82
          ARS AEDASPDYNSD   ARFSSWA PGSLAVTRGILRVVPPDLGSR E   LG   +R 
Sbjct: 18 ARSVAEDASPDYNSDGAAARFSSWASPGSLAVTRGILRVVPPDLGSRSEAFALGPTGRRG 77

Query: 83 GVGVHKEA 91
           + V  +A
Sbjct: 78 RIAVFLDA 85

[Close]

BLAST of HG10009127 vs. ExPASy TrEMBL
Match: A0A4D6NMM4 (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG11g1241 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 6.2e-14
Identity = 44/53 (83.02%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 23  ARSAAEDASPDYNSDVEDARFSSWALPGSLAVTRGILRVVPPDLGSRRERRPL 76
           ARS AEDASPDYNS+   ARFSSWA PGSLAVTRGILRVVPPDLGSR +RR L
Sbjct: 77  ARSVAEDASPDYNSNGTAARFSSWAAPGSLAVTRGILRVVPPDLGSRSKRRAL 129

[Close]

BLAST of HG10009127 vs. ExPASy TrEMBL
Match: A0A4U5PME5 (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000209730 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 8.1e-14
Identity = 43/49 (87.76%), Postives = 44/49 (89.80%), Query Frame = 0


Query: 23  ARSAAEDASPDYNSDVEDARFSSWALPGSLAVTRGILRVVPPDLGSRRE 72
           A SAAEDASPDYNSD   ARFSSWA PGSLAVTRGILRVVPPDLGS+RE
Sbjct: 104 AWSAAEDASPDYNSDAAGARFSSWAFPGSLAVTRGILRVVPPDLGSQRE 152

[Close]

BLAST of HG10009127 vs. ExPASy TrEMBL
Match: A0A6N2KJE8 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS91804 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 3.1e-13
Identity = 42/49 (85.71%), Postives = 44/49 (89.80%), Query Frame = 0


Query: 23   ARSAAEDASPDYNSDVEDARFSSWALPGSLAVTRGILRVVPPDLGSRRE 72
            A SAAEDASPDYNS+   ARFSSWA PGSLAVTRGILRVVPPDLGS+RE
Sbjct: 972  AWSAAEDASPDYNSNAAGARFSSWAFPGSLAVTRGILRVVPPDLGSQRE 1020

The following BLAST results are available for this feature:

BLAST of HG10009127 vs. NCBI nr


Match Name	E-value	Identity	Description
KEH17348.1	2.0e-14	84.91	hypothetical protein MTR_0021s0160 [Medicago truncatula]	[more]
BAD07869.1	4.4e-14	70.59	hypothetical protein [Oryza sativa Japonica Group]	[more]
QCE14242.1	1.3e-13	83.02	hypothetical protein DEO72_LG11g1241 [Vigna unguiculata]	[more]
TKR97773.1	1.7e-13	87.76	hypothetical protein D5086_0000209730 [Populus alba]	[more]
KAG4975684.1	1.6e-11	80.00	hypothetical protein JHK86_035158 [Glycine max] >KAG4975691.1 hypothetical prote...	[more]

BLAST of HG10009127 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10009127 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A072TKH6	9.6e-15	84.91	Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MTR_0021s0160 PE=4 SV=...	[more]
Q6Z8F0	2.1e-14	70.59	Uncharacterized protein P0459B01.18 OS=Oryza sativa subsp. japonica OX=39947 GN=...	[more]
A0A4D6NMM4	6.2e-14	83.02	Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG11g1241 PE=4 SV=...	[more]
A0A4U5PME5	8.1e-14	87.76	Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000209730 PE=4 SV=1	[more]
A0A6N2KJE8	3.1e-13	85.71	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS91804 PE=4 SV=1	[more]

BLAST of HG10009127 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10009127.1	HG10009127.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043457	regulation of cellular respiration
cellular_component	GO:0016021	integral component of membrane