HG10009079 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10009079
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr06: 2317294 .. 2318778 (-)
RNA-Seq Expression	HG10009079
Synteny	HG10009079

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAACGTGTTCTAGAAGAGAAAATAAAATAAACGAGGAAGATGGTAAACTGCTGTCATACATCAATCAACCAACATCAACTGAAGAGGAAAGAGCATGCACAGGTGTAAGTATATATGGGACAGTTAAAATAGAAATCGAAAGAGCGAAATTGCATACTGATAGATGCAGAAGCAAGCACACAGTAGGACTCTGTAATTAGCAAGTAGAAAAAGATCGTGTCCTCTTTCCACAAATGATACTAAATGTTGAATGAAACCGAGTTACAAAGAGTAGAGATTTCAATTTCTTTTCTAGATGGGGAAGAAAACTAAATCAGTCTAGTACCTAATGGAGAAAGAAACAGAGGATCCTTGCTCAAGTGGGGGCATAACATTAACCAAAGGAAAAAAAATGTATCTAGCAGCTCAGTCTTTCTTGAATCCTTCTGAGACAGTAAGGATCAACTACAAGATGAAAAAAAGTTATACAAGGGGTGTGACAGAAGATGAAGGGAAAAAAAAAATCATACCAAATACAAAATAAACTCCACAGCTCCACCAATTGCTATTATCTCATTGAAAAGGCAACCAATTGGTTATATGCAAACAGCAAACTTTTCTTAGAAATCAAGCTGATTACAGTAAAAAGACAAGAGAATAACACAAAAATATGTAGAAGGATCCTAGAAAGTACCTTAGAAATACAATAAAAATAATTAAACAAACAACCAGCCAACATCCCATAATTAATATACCAACTATTTGATTGCTGTAATAGTGCAGATGTATGAGACATGAAATCTCATTAAGATGTAAACCACAATCAGAGCATATTAATGCTTAATTTCGAACTTGAATACCGTTTTTTTTTTCTTTTTAACGGGGGGAGGGAATGAATTTCGAACGAATTATCTTCCCAATTTCTAACAGAGCAAATTAAATAAAACCCCACTTGTTCCTTTATGCTGTAATCTATAAAACAAAAACTTGCTCGACGATATTTCAAGAGTGAGACCAAAAGAGTAGATTCGTCGACATTTCAAATAAAAGCTAGCTCAATCGTGGGTAGGAAAAAAAAACACTCAGCGATTAATTGAAGTGCATCTCGAACTTCACAACACATAAATCAAATCATATGCATGTCAAATTCAAAACCACAAACAGACATGACCTGAGAGAAGGGAAAAAGAAAAACAAAACAAAACAAACCCCTAAATCAAAATTCAAACCACTTTCACTTGCAGGGTCCACGAATCCGGAAAATTCAAAAACAAAACAGAACAAAAACAGACGGGAACTTCCTCATATGCGAAAACCCCCCAACACCTTCCCTGCTTCAAGCAACACACAAACAGGGGAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAGAAACCCAAAACCATAAAACGAATCAAGACCCAGAATTCAAGGGAAAGAAATAGAGAAGGAGGAGATAGAGAGAAGTTGAAAGAAAGCAAGAAAACAAAGAAGAAGCAATGA

mRNA sequence

ATGCCAACGTGTTCTAGAAGAGAAAATAAAATAAACGAGGAAGATGGTAAACTGCTGTCATACATCAATCAACCAACATCAACTGAAGAGGAAAGAGCATGCACAGGTGGTCCACGAATCCGGAAAATTCAAAAACAAAACAGAACAAAAACAGACGGGAACTTCCTCATATGCGAAAACCCCCCAACACCTTCCCTGCTTCAAGCAACACACAAACAGGGGAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAGAAACCCAAAACCATAAAACGAATCAAGACCCAGAATTCAAGGGAAAGAAATAGAGAAGGAGGAGATAGAGAGAAGTTGAAAGAAAGCAAGAAAACAAAGAAGAAGCAATGA

Coding sequence (CDS)

ATGCCAACGTGTTCTAGAAGAGAAAATAAAATAAACGAGGAAGATGGTAAACTGCTGTCATACATCAATCAACCAACATCAACTGAAGAGGAAAGAGCATGCACAGGTGGTCCACGAATCCGGAAAATTCAAAAACAAAACAGAACAAAAACAGACGGGAACTTCCTCATATGCGAAAACCCCCCAACACCTTCCCTGCTTCAAGCAACACACAAACAGGGGAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAGAAACCCAAAACCATAAAACGAATCAAGACCCAGAATTCAAGGGAAAGAAATAGAGAAGGAGGAGATAGAGAGAAGTTGAAAGAAAGCAAGAAAACAAAGAAGAAGCAATGA

Protein sequence

MPTCSRRENKINEEDGKLLSYINQPTSTEEERACTGGPRIRKIQKQNRTKTDGNFLICENPPTPSLLQATHKQGKKRKKKKKKKKKPKTIKRIKTQNSRERNREGGDREKLKESKKTKKKQ

Homology

The following BLAST results are available for this feature:

BLAST of HG10009079 vs.


Match Name	E-value	Identity	Description

BLAST of HG10009079 vs.


Match Name	E-value	Identity	Description

BLAST of HG10009079 vs.


Match Name	E-value	Identity	Description

BLAST of HG10009079 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 112..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..70
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 93..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10009079.1	HG10009079.1	mRNA