HG10009074 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10009074
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionCox19-like CHCH family protein
LocationChr06: 2207700 .. 2208306 (-)
RNA-Seq ExpressionHG10009074
SyntenyHG10009074
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGAACCTCGAGCTCAGCCGATTTGCGCTCAGGAAGCTCTCAATTTGCTCAATTGCGTTACGGAGTCTCCCTTCGATCAAGAGAAATGCTACCGTCTCCTTCATTCTTTGCGTGAATGCGTACTCAGCAAGGTATTCGTTCCTTCTCTTCAATTTGCCCTAACGCTTCACTGTTTGTTTCGATTGTTCATGTTATCAATTGGTTTTGTTTTTGGAATTTTCGAATTAGATCGTCTAGCTCTCTGAATCGAAGTTCGATTGTCATTCTTCGAATTCTGATTCAGTTATAATATTCAATTAATTGATATACTTTAGGATTAGTGAAATGGAAGATTAAGTGTTCTGGATAAGATATTTGATTTCACATTTAGCATATGGAAACAGATGCAGGTGGATTTTGGTTTAACGCTGATTAAGAAGATATTCAAACATGTGGGGATCTTGGGTTGAATTTTTGTTCTGATTTGATTGGCTTTAACTTAATTTAGAATGAAGCTTTAGGTTTCTAATGTTATTTTCTTTGATTTGTTACTTCAAACAGAAAGTGAAGAAGTTCTCTCTGGCTGAAGAAGAACATACAAAACCAATCAAGAAGAATGCTTGA

mRNA sequence

ATGGATGAACCTCGAGCTCAGCCGATTTGCGCTCAGGAAGCTCTCAATTTGCTCAATTGCGTTACGGAGTCTCCCTTCGATCAAGAGAAATGCTACCGTCTCCTTCATTCTTTGCGTGAATGCGTACTCAGCAAGAAAGTGAAGAAGTTCTCTCTGGCTGAAGAAGAACATACAAAACCAATCAAGAAGAATGCTTGA

Coding sequence (CDS)

ATGGATGAACCTCGAGCTCAGCCGATTTGCGCTCAGGAAGCTCTCAATTTGCTCAATTGCGTTACGGAGTCTCCCTTCGATCAAGAGAAATGCTACCGTCTCCTTCATTCTTTGCGTGAATGCGTACTCAGCAAGAAAGTGAAGAAGTTCTCTCTGGCTGAAGAAGAACATACAAAACCAATCAAGAAGAATGCTTGA

Protein sequence

MDEPRAQPICAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEEHTKPIKKNA
Homology
BLAST of HG10009074 vs. NCBI nr
Match: KGN50036.1 (hypothetical protein Csa_000619 [Cucumis sativus])

HSP 1 Score: 123.2 bits (308), Expect = 8.0e-25
Identity = 61/66 (92.42%), Postives = 63/66 (95.45%), Query Frame = 0

Query: 1  MDEPRAQPICAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEEHTKP 60
          MDEP+ QP+CAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEE TKP
Sbjct: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEEQTKP 60

Query: 61 -IKKNA 66
           IKKNA
Sbjct: 61 IIKKNA 66

BLAST of HG10009074 vs. NCBI nr
Match: KAA0042698.1 (Cox19-like CHCH family protein [Cucumis melo var. makuwa] >TYK06102.1 Cox19-like CHCH family protein [Cucumis melo var. makuwa])

HSP 1 Score: 120.9 bits (302), Expect = 4.0e-24
Identity = 59/66 (89.39%), Postives = 63/66 (95.45%), Query Frame = 0

Query: 1  MDEPRAQPICAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEEHTKP 60
          MDEP+ QP+CAQEALNLLNCVTESPFDQ+KCYRLLHSLRECVLSKKVKKFSLAEEE TKP
Sbjct: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQDKCYRLLHSLRECVLSKKVKKFSLAEEEQTKP 60

Query: 61 I-KKNA 66
          I KKN+
Sbjct: 61 IVKKNS 66

BLAST of HG10009074 vs. NCBI nr
Match: KAG6606053.1 (hypothetical protein SDJN03_03370, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 108.2 bits (269), Expect = 2.7e-20
Identity = 50/59 (84.75%), Postives = 56/59 (94.92%), Query Frame = 0

Query: 1  MDEPRAQPICAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEEHTK 60
          MD+ +AQP+CAQEAL+LLNCVT+SPFDQEKCYRLLHSLRECVLSKKVKKFSLA+EE  K
Sbjct: 1  MDDAQAQPVCAQEALDLLNCVTDSPFDQEKCYRLLHSLRECVLSKKVKKFSLADEERAK 59

BLAST of HG10009074 vs. NCBI nr
Match: KAG7017003.1 (hypothetical protein SDJN02_22114, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 102.8 bits (255), Expect = 1.1e-18
Identity = 49/62 (79.03%), Postives = 56/62 (90.32%), Query Frame = 0

Query: 1  MDEPRAQPICAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEEHTKP 60
          M EPR+QP+CAQEAL+LLNCVTESPFDQ+KCYRLLHSLRECV+S   KKFSLA+EE TK 
Sbjct: 13 MGEPRSQPVCAQEALDLLNCVTESPFDQQKCYRLLHSLRECVIS---KKFSLADEEQTKQ 71

Query: 61 IK 63
          +K
Sbjct: 73 MK 71

BLAST of HG10009074 vs. NCBI nr
Match: KAF5734209.1 (hypothetical protein HS088_TW16G00654 [Tripterygium wilfordii])

HSP 1 Score: 98.2 bits (243), Expect = 2.8e-17
Identity = 45/56 (80.36%), Postives = 54/56 (96.43%), Query Frame = 0

Query: 1  MDEPRAQPICAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEE 57
          MDE RA+P+CAQEAL+LLNCVT+SPFDQEKC +LL+SLRECVL+KKVKKFSLA++E
Sbjct: 1  MDEARARPVCAQEALDLLNCVTQSPFDQEKCVQLLNSLRECVLNKKVKKFSLADQE 56

BLAST of HG10009074 vs. ExPASy TrEMBL
Match: A0A0A0KQS7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G151520 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 3.9e-25
Identity = 61/66 (92.42%), Postives = 63/66 (95.45%), Query Frame = 0

Query: 1  MDEPRAQPICAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEEHTKP 60
          MDEP+ QP+CAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEE TKP
Sbjct: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEEQTKP 60

Query: 61 -IKKNA 66
           IKKNA
Sbjct: 61 IIKKNA 66

BLAST of HG10009074 vs. ExPASy TrEMBL
Match: A0A5D3C4E2 (Cox19-like CHCH family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G002030 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.9e-24
Identity = 59/66 (89.39%), Postives = 63/66 (95.45%), Query Frame = 0

Query: 1  MDEPRAQPICAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEEHTKP 60
          MDEP+ QP+CAQEALNLLNCVTESPFDQ+KCYRLLHSLRECVLSKKVKKFSLAEEE TKP
Sbjct: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQDKCYRLLHSLRECVLSKKVKKFSLAEEEQTKP 60

Query: 61 I-KKNA 66
          I KKN+
Sbjct: 61 IVKKNS 66

BLAST of HG10009074 vs. ExPASy TrEMBL
Match: A0A7J7CJI7 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW16G00654 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.3e-17
Identity = 45/56 (80.36%), Postives = 54/56 (96.43%), Query Frame = 0

Query: 1  MDEPRAQPICAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEE 57
          MDE RA+P+CAQEAL+LLNCVT+SPFDQEKC +LL+SLRECVL+KKVKKFSLA++E
Sbjct: 1  MDEARARPVCAQEALDLLNCVTQSPFDQEKCVQLLNSLRECVLNKKVKKFSLADQE 56

BLAST of HG10009074 vs. ExPASy TrEMBL
Match: M5WP14 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G114300 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.3e-16
Identity = 46/67 (68.66%), Postives = 56/67 (83.58%), Query Frame = 0

Query: 1  MDEPRAQPICAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEEH--T 60
          M++ R + +C QEAL+LLNCVT+SPFDQEKC RLL+SLRECVL+KKVKKFSLA++E    
Sbjct: 1  MEDGRGKAVCGQEALDLLNCVTQSPFDQEKCVRLLNSLRECVLNKKVKKFSLADQEQKDA 60

Query: 61 KPIKKNA 66
          KPI K A
Sbjct: 61 KPIDKKA 67

BLAST of HG10009074 vs. ExPASy TrEMBL
Match: A0A6J5XDF7 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS32831 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.3e-16
Identity = 46/67 (68.66%), Postives = 56/67 (83.58%), Query Frame = 0

Query: 1  MDEPRAQPICAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEEH--T 60
          M++ R + +C QEAL+LLNCVT+SPFDQEKC RLL+SLRECVL+KKVKKFSLA++E    
Sbjct: 1  MEDGRGKAVCGQEALDLLNCVTQSPFDQEKCVRLLNSLRECVLNKKVKKFSLADQEQKDA 60

Query: 61 KPIKKNA 66
          KPI K A
Sbjct: 61 KPIDKKA 67

BLAST of HG10009074 vs. TAIR 10
Match: AT4G23760.1 (Cox19-like CHCH family protein )

HSP 1 Score: 89.7 bits (221), Expect = 9.1e-19
Identity = 41/57 (71.93%), Postives = 46/57 (80.70%), Query Frame = 0

Query: 1   MDEPRAQPICAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEEH 58
           M++   QPIC QEAL LLNCV ESPFDQEKC R L SLRECVLSKKVKKFS+  ++H
Sbjct: 47  MEKQSTQPICGQEALQLLNCVAESPFDQEKCVRFLQSLRECVLSKKVKKFSIPSQDH 103

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN50036.18.0e-2592.42hypothetical protein Csa_000619 [Cucumis sativus][more]
KAA0042698.14.0e-2489.39Cox19-like CHCH family protein [Cucumis melo var. makuwa] >TYK06102.1 Cox19-like... [more]
KAG6606053.12.7e-2084.75hypothetical protein SDJN03_03370, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7017003.11.1e-1879.03hypothetical protein SDJN02_22114, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAF5734209.12.8e-1780.36hypothetical protein HS088_TW16G00654 [Tripterygium wilfordii][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KQS73.9e-2592.42Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G151520 PE=4 SV=1[more]
A0A5D3C4E21.9e-2489.39Cox19-like CHCH family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A7J7CJI71.3e-1780.36Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW16G00654 ... [more]
M5WP143.3e-1668.66Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G114300 PE=4 SV=1[more]
A0A6J5XDF73.3e-1668.66Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS32831 PE=4 S... [more]
Match NameE-valueIdentityDescription
AT4G23760.19.1e-1971.93Cox19-like CHCH family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.287.1130CytochromE C oxidase copper chaperonecoord: 5..65
e-value: 4.7E-6
score: 28.5
NoneNo IPR availablePANTHERPTHR37750COX19-LIKE CHCH FAMILY PROTEINcoord: 1..60
IPR009069Cysteine alpha-hairpin motif superfamilySUPERFAMILY47072Cysteine alpha-hairpin motifcoord: 10..42

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10009074.1HG10009074.1mRNA