HG10009072 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10009072
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	arabinogalactan peptide 22-like
Location	Chr06: 2204299 .. 2204651 (+)
RNA-Seq Expression	HG10009072
Synteny	HG10009072

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTTGTTGCTTATAAGGTCTCTTTTGGTGGTGTTTTATTTGTTGTTGCTTTGCTTTTGGCTATGCTTTCCTCTGCTTCTGCTCAATCGCTGTCTCCGGCTCAACCTCCTGCTACTAGCGATGGTTAATTCTTCTTCTTAACTAATAAATAAATAATAATAAACCATATGGTTATCAAATGTGGCCTAAATGATTATCTTTGAGGGTTTTATAATGTAACTGATGAGAATTATTGTAAATTTGATTTGCAGGGACAAGCATAGACCAGGGGATTGCCTATGCATTGATGTTGTTGGCTTTGGTGCTCACCTACATTATCCATTCAGCGGACCTTTCTATCAGTTTATAA

mRNA sequence

ATGGCGGTTGTTGCTTATAAGGTCTCTTTTGGTGGTGTTTTATTTGTTGTTGCTTTGCTTTTGGCTATGCTTTCCTCTGCTTCTGCTCAATCGCTGTCTCCGGCTCAACCTCCTGCTACTAGCGATGGGACAAGCATAGACCAGGGGATTGCCTATGCATTGATGTTGTTGGCTTTGGTGCTCACCTACATTATCCATTCAGCGGACCTTTCTATCAGTTTATAA

Coding sequence (CDS)

ATGGCGGTTGTTGCTTATAAGGTCTCTTTTGGTGGTGTTTTATTTGTTGTTGCTTTGCTTTTGGCTATGCTTTCCTCTGCTTCTGCTCAATCGCTGTCTCCGGCTCAACCTCCTGCTACTAGCGATGGGACAAGCATAGACCAGGGGATTGCCTATGCATTGATGTTGTTGGCTTTGGTGCTCACCTACATTATCCATTCAGCGGACCTTTCTATCAGTTTATAA

Protein sequence

MAVVAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSISL

Homology

[Close]

BLAST of HG10009072 vs. NCBI nr
Match: XP_004143956.1 (arabinogalactan protein 41 [Cucumis sativus] >KGN50035.1 hypothetical protein Csa_000543 [Cucumis sativus])

HSP 1 Score: 108.2 bits (269), Expect = 3.0e-20
Identity = 63/74 (85.14%), Postives = 66/74 (89.19%), Query Frame = 0


Query: 1  MAVVAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYALMLLALV 60
          MAVVA KV FGG+LFVVAL+L  LSSA AQSLSPAQPPAT DGTSIDQGIAY LMLLALV
Sbjct: 1  MAVVACKVPFGGILFVVALVLTRLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALV 60

Query: 61 LTYIIHSADLSISL 75
          LTYIIHSADL +SL
Sbjct: 61 LTYIIHSADLYVSL 74

[Close]

BLAST of HG10009072 vs. NCBI nr
Match: XP_008437371.1 (PREDICTED: arabinogalactan peptide 22-like [Cucumis melo] >KAA0042697.1 arabinogalactan peptide 22-like [Cucumis melo var. makuwa] >TYK06101.1 arabinogalactan peptide 22-like [Cucumis melo var. makuwa])

HSP 1 Score: 104.8 bits (260), Expect = 3.3e-19
Identity = 61/74 (82.43%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 1  MAVVAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYALMLLALV 60
          MAVVA K+ F G+LFVVAL+L  LS A AQSLSPAQPPATSDGTSIDQGIAYALMLLALV
Sbjct: 1  MAVVACKIPFSGILFVVALVLTRLSPACAQSLSPAQPPATSDGTSIDQGIAYALMLLALV 60

Query: 61 LTYIIHSADLSISL 75
          LTYIIHSAD  +SL
Sbjct: 61 LTYIIHSADRYVSL 74

[Close]

BLAST of HG10009072 vs. NCBI nr
Match: KAG7017004.1 (Arabinogalactan peptide 16 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 93.6 bits (231), Expect = 7.7e-16
Identity = 57/73 (78.08%), Postives = 61/73 (83.56%), Query Frame = 0


Query: 1  MAVVAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYALMLLALV 60
          MAVVA K+ F GV F V  +LAM+  A AQSL+PAQPPA SDGTSIDQGIAY LMLLALV
Sbjct: 1  MAVVANKIPF-GVFFGVVFVLAMILPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALV 60

Query: 61 LTYIIHSADLSIS 74
          LTYIIHSADLSIS
Sbjct: 61 LTYIIHSADLSIS 72

[Close]

BLAST of HG10009072 vs. NCBI nr
Match: KAG6579545.1 (Arabinogalactan protein 16, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 92.0 bits (227), Expect = 2.2e-15
Identity = 57/73 (78.08%), Postives = 60/73 (82.19%), Query Frame = 0


Query: 1  MAVVAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYALMLLALV 60
          MAVVA K+ F GV   V  +LAML  A AQSL+PAQPPA SDGTSIDQGIAY LMLLALV
Sbjct: 1  MAVVANKIPF-GVFIGVVFVLAMLLPACAQSLAPAQPPAASDGTSIDQGIAYVLMLLALV 60

Query: 61 LTYIIHSADLSIS 74
          LTYIIHSADLSIS
Sbjct: 61 LTYIIHSADLSIS 72

[Close]

BLAST of HG10009072 vs. NCBI nr
Match: XP_023532560.1 (arabinogalactan peptide 20-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 79.7 bits (195), Expect = 1.2e-11
Identity = 53/76 (69.74%), Postives = 57/76 (75.00%), Query Frame = 0


Query: 1  MAVVAYKVSFGGVLFVVALLLAMLSSASA--QSLSPAQPPATSDGTSIDQGIAYALMLLA 60
          M VVAY     GVL  VA +LAML  ASA   SLSPAQPP  SDGTS+DQGIAY LMLLA
Sbjct: 1  MEVVAYNKVPYGVLVAVAFVLAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLLA 60

Query: 61 LVLTYIIHSADLSISL 75
          L+LTYIIH A+L ISL
Sbjct: 61 LLLTYIIHLAELPISL 76

[Close]

BLAST of HG10009072 vs. ExPASy Swiss-Prot
Match: O82337 (Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.7e-08
Identity = 39/70 (55.71%), Postives = 47/70 (67.14%), Query Frame = 0


Query: 4  VAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYALMLLALVLTY 63
          +A + S  G      +   +LS A AQSL+PA P  TSDGTSIDQGIAY LM++ALVLTY
Sbjct: 1  MASRNSVTGFALFSFVFAVILSLAGAQSLAPA-PAPTSDGTSIDQGIAYLLMVVALVLTY 60

Query: 64 IIHSADLSIS 74
          +IH  D S S
Sbjct: 61 LIHPLDASSS 69

[Close]

BLAST of HG10009072 vs. ExPASy Swiss-Prot
Match: Q9M373 (Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.7e-08
Identity = 38/62 (61.29%), Postives = 47/62 (75.81%), Query Frame = 0


Query: 13 VLFVVALLLAMLSS-ASAQSLSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLS 72
          V+ + A + A++S  A AQSL+PA P  TSDGTSIDQGIAY LM++ALVLTY+IH  D S
Sbjct: 9  VIALFAFVFAVISPFAGAQSLAPA-PSPTSDGTSIDQGIAYLLMVVALVLTYLIHPLDAS 68

Query: 73 IS 74
           S
Sbjct: 69 SS 69

[Close]

BLAST of HG10009072 vs. ExPASy Swiss-Prot
Match: Q8L9T8 (Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.1e-07
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 0


Query: 10 FGGVLFVVALLLA-MLSSASAQSLSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIH 67
          F GV  +V+++ A +L  A AQS +PA P  TSDGT+IDQGIAY LML+ALVLTY+IH
Sbjct: 7  FFGVSTIVSIIFAILLPMAHAQSAAPA-PAPTSDGTTIDQGIAYVLMLVALVLTYLIH 63

[Close]

BLAST of HG10009072 vs. ExPASy Swiss-Prot
Match: Q9FK16 (Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 2.2e-05
Identity = 33/66 (50.00%), Postives = 44/66 (66.67%), Query Frame = 0


Query: 1  MAVVAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYALMLLALV 60
          MA + + +    V  +++++L  L  A + S SPA P  TSDGTSIDQGIAY LM++AL 
Sbjct: 1  MASLKFPLEILAVFVIISVIL--LPIAQSHSSSPA-PAPTSDGTSIDQGIAYVLMMVALA 60

Query: 61 LTYIIH 67
          LTY IH
Sbjct: 61 LTYFIH 63

[Close]

BLAST of HG10009072 vs. ExPASy TrEMBL
Match: A0A0A0KK44 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G151510 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.5e-20
Identity = 63/74 (85.14%), Postives = 66/74 (89.19%), Query Frame = 0


Query: 1  MAVVAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYALMLLALV 60
          MAVVA KV FGG+LFVVAL+L  LSSA AQSLSPAQPPAT DGTSIDQGIAY LMLLALV
Sbjct: 1  MAVVACKVPFGGILFVVALVLTRLSSAYAQSLSPAQPPATGDGTSIDQGIAYVLMLLALV 60

Query: 61 LTYIIHSADLSISL 75
          LTYIIHSADL +SL
Sbjct: 61 LTYIIHSADLYVSL 74

[Close]

BLAST of HG10009072 vs. ExPASy TrEMBL
Match: A0A5D3C2F1 (Arabinogalactan peptide 22-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G002020 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.6e-19
Identity = 61/74 (82.43%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 1  MAVVAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYALMLLALV 60
          MAVVA K+ F G+LFVVAL+L  LS A AQSLSPAQPPATSDGTSIDQGIAYALMLLALV
Sbjct: 1  MAVVACKIPFSGILFVVALVLTRLSPACAQSLSPAQPPATSDGTSIDQGIAYALMLLALV 60

Query: 61 LTYIIHSADLSISL 75
          LTYIIHSAD  +SL
Sbjct: 61 LTYIIHSADRYVSL 74

[Close]

BLAST of HG10009072 vs. ExPASy TrEMBL
Match: A0A1S3ATI9 (arabinogalactan peptide 22-like OS=Cucumis melo OX=3656 GN=LOC103482805 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.6e-19
Identity = 61/74 (82.43%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 1  MAVVAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYALMLLALV 60
          MAVVA K+ F G+LFVVAL+L  LS A AQSLSPAQPPATSDGTSIDQGIAYALMLLALV
Sbjct: 1  MAVVACKIPFSGILFVVALVLTRLSPACAQSLSPAQPPATSDGTSIDQGIAYALMLLALV 60

Query: 61 LTYIIHSADLSISL 75
          LTYIIHSAD  +SL
Sbjct: 61 LTYIIHSADRYVSL 74

[Close]

BLAST of HG10009072 vs. ExPASy TrEMBL
Match: A0A6J1CXM0 (arabinogalactan peptide 22-like OS=Momordica charantia OX=3673 GN=LOC111015367 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 7.3e-12
Identity = 46/61 (75.41%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 13 VLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLSI 72
          V FV+   L + + A  +S+SPAQP ATSDGTSIDQGIAYALMLLALVLTYIIHSADLSI
Sbjct: 19 VAFVLGAFLPVQAHAQPESMSPAQPLATSDGTSIDQGIAYALMLLALVLTYIIHSADLSI 78

Query: 73 S 74
          S
Sbjct: 79 S 79

[Close]

BLAST of HG10009072 vs. ExPASy TrEMBL
Match: A0A6J1K4A3 (arabinogalactan peptide 22-like OS=Cucurbita maxima OX=3661 GN=LOC111491553 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 9.5e-12
Identity = 55/77 (71.43%), Postives = 60/77 (77.92%), Query Frame = 0


Query: 1  MAVVAY-KVSFGGVLFVVALLLAMLSSASA--QSLSPAQPPATSDGTSIDQGIAYALMLL 60
          M VVAY KV + GVL  VA +LAML  ASA   SLSPAQPP  SDGTS+DQGIAY LMLL
Sbjct: 1  MEVVAYIKVPY-GVLVAVAFVLAMLFPASAADPSLSPAQPPIASDGTSLDQGIAYVLMLL 60

Query: 61 ALVLTYIIHSADLSISL 75
          AL+LTYIIH A+L ISL
Sbjct: 61 ALLLTYIIHLAELPISL 76

[Close]

BLAST of HG10009072 vs. TAIR 10
Match: AT2G46330.1 (arabinogalactan protein 16 )

HSP 1 Score: 58.2 bits (139), Expect = 3.3e-09
Identity = 39/70 (55.71%), Postives = 47/70 (67.14%), Query Frame = 0


Query: 4  VAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYALMLLALVLTY 63
          +A + S  G      +   +LS A AQSL+PA P  TSDGTSIDQGIAY LM++ALVLTY
Sbjct: 1  MASRNSVTGFALFSFVFAVILSLAGAQSLAPA-PAPTSDGTSIDQGIAYLLMVVALVLTY 60

Query: 64 IIHSADLSIS 74
          +IH  D S S
Sbjct: 61 LIHPLDASSS 69

[Close]

BLAST of HG10009072 vs. TAIR 10
Match: AT3G61640.1 (arabinogalactan protein 20 )

HSP 1 Score: 58.2 bits (139), Expect = 3.3e-09
Identity = 38/62 (61.29%), Postives = 47/62 (75.81%), Query Frame = 0


Query: 13 VLFVVALLLAMLSS-ASAQSLSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIHSADLS 72
          V+ + A + A++S  A AQSL+PA P  TSDGTSIDQGIAY LM++ALVLTY+IH  D S
Sbjct: 9  VIALFAFVFAVISPFAGAQSLAPA-PSPTSDGTSIDQGIAYLLMVVALVLTYLIHPLDAS 68

Query: 73 IS 74
           S
Sbjct: 69 SS 69

[Close]

BLAST of HG10009072 vs. TAIR 10
Match: AT5G24105.1 (arabinogalactan protein 41 )

HSP 1 Score: 57.0 bits (136), Expect = 7.5e-09
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 0


Query: 10 FGGVLFVVALLLA-MLSSASAQSLSPAQPPATSDGTSIDQGIAYALMLLALVLTYIIH 67
          F GV  +V+++ A +L  A AQS +PA P  TSDGT+IDQGIAY LML+ALVLTY+IH
Sbjct: 7  FFGVSTIVSIIFAILLPMAHAQSAAPA-PAPTSDGTTIDQGIAYVLMLVALVLTYLIH 63

[Close]

BLAST of HG10009072 vs. TAIR 10
Match: AT5G53250.1 (arabinogalactan protein 22 )

HSP 1 Score: 49.3 bits (116), Expect = 1.6e-06
Identity = 33/66 (50.00%), Postives = 44/66 (66.67%), Query Frame = 0


Query: 1  MAVVAYKVSFGGVLFVVALLLAMLSSASAQSLSPAQPPATSDGTSIDQGIAYALMLLALV 60
          MA + + +    V  +++++L  L  A + S SPA P  TSDGTSIDQGIAY LM++AL 
Sbjct: 1  MASLKFPLEILAVFVIISVIL--LPIAQSHSSSPA-PAPTSDGTSIDQGIAYVLMMVALA 60

Query: 61 LTYIIH 67
          LTY IH
Sbjct: 61 LTYFIH 63

The following BLAST results are available for this feature:

BLAST of HG10009072 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143956.1	3.0e-20	85.14	arabinogalactan protein 41 [Cucumis sativus] >KGN50035.1 hypothetical protein Cs...	[more]
XP_008437371.1	3.3e-19	82.43	PREDICTED: arabinogalactan peptide 22-like [Cucumis melo] >KAA0042697.1 arabinog...	[more]
KAG7017004.1	7.7e-16	78.08	Arabinogalactan peptide 16 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6579545.1	2.2e-15	78.08	Arabinogalactan protein 16, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023532560.1	1.2e-11	69.74	arabinogalactan peptide 20-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of HG10009072 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82337	4.7e-08	55.71	Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1	[more]
Q9M373	4.7e-08	61.29	Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1	[more]
Q8L9T8	1.1e-07	62.07	Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1	[more]
Q9FK16	2.2e-05	50.00	Arabinogalactan protein 22 OS=Arabidopsis thaliana OX=3702 GN=AGP22 PE=1 SV=1	[more]

BLAST of HG10009072 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KK44	1.5e-20	85.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G151510 PE=4 SV=1	[more]
A0A5D3C2F1	1.6e-19	82.43	Arabinogalactan peptide 22-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3ATI9	1.6e-19	82.43	arabinogalactan peptide 22-like OS=Cucumis melo OX=3656 GN=LOC103482805 PE=4 SV=...	[more]
A0A6J1CXM0	7.3e-12	75.41	arabinogalactan peptide 22-like OS=Momordica charantia OX=3673 GN=LOC111015367 P...	[more]
A0A6J1K4A3	9.5e-12	71.43	arabinogalactan peptide 22-like OS=Cucurbita maxima OX=3661 GN=LOC111491553 PE=4...	[more]

BLAST of HG10009072 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46330.1	3.3e-09	55.71	arabinogalactan protein 16	[more]
AT3G61640.1	3.3e-09	61.29	arabinogalactan protein 20	[more]
AT5G24105.1	7.5e-09	62.07	arabinogalactan protein 41	[more]
AT5G53250.1	1.6e-06	50.00	arabinogalactan protein 22	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009424	Arabinogalactan protein 16/20/22/41	PFAM	PF06376	AGP	coord: 33..66 e-value: 8.0E-17 score: 60.8
IPR009424	Arabinogalactan protein 16/20/22/41	PANTHER	PTHR33374	ARABINOGALACTAN PROTEIN 20	coord: 1..73
None	No IPR available	PANTHER	PTHR33374:SF38	ARABINOGALACTAN PROTEIN 41	coord: 1..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10009072.1	HG10009072.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane