HG10009061 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10009061
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionglycine-rich cell wall structural protein 1-like
LocationChr06: 2129952 .. 2130720 (-)
RNA-Seq ExpressionHG10009061
SyntenyHG10009061
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCTCTGCAATGCAACAAACCAGCTGATCATGGGCACAGCCAGCACCAGCAGAAGCATGACCAACAGCATAACCATTGCTTCGGCGGCCACGTCTCCGACAAGATCACAGGCGTCTTCAAAGGCCACCATCATGGCCAGGCTCCACTGGCATCGGCATCGGCACCGGTGCACCACTCTGCCAATGCCGGCTACTGCAAGCCAGCTGGGTCAAAGAAGAAGAAGGAACACCACAAGAATAAAGAAGGGGGTTTTTTTCGTAAGATCAAGGATGTCTTTTCTGACCACAGCAGTGACAGCAGTGACAGTGAAAATGAATGTCACAAACCTCATCACAACAAGAAGGTAAGTTTAATTTTCTTGCTTCGATTCTCTTATTTTGATTTCTCCGATGTATAATTTTACTATCATTGTGAAATAGAATTCACCAAGTGTTTTGATTGTTTACCTACGAAAACGTGAGTTGTTGGGTTTAGTTTTAGCATGTTGGCAACAGTGTCATGTGATAGTAATAACCGTTGATTTGCACAATTGATCATAGATATGGTTGAAACGTCCCTTAGCATGGGTGAGTAAAGAGTGAATGTAACAATTAGATGAGTGCAATTTCTAAACAAATATCCAGCTTAATATATACGGCTAGTTTGGGACTGCAAAATTTTGATAGGATCTAGTGCATTAGAGTTGACATCTTTTAAATTTTTTTAATTTGTATTTTCACTTTGCTCTCATTATGTAATTCTTTTGCCTGGATTTGCAGAATTGA

mRNA sequence

ATGGCATCTCTGCAATGCAACAAACCAGCTGATCATGGGCACAGCCAGCACCAGCAGAAGCATGACCAACAGCATAACCATTGCTTCGGCGGCCACGTCTCCGACAAGATCACAGGCGTCTTCAAAGGCCACCATCATGGCCAGGCTCCACTGGCATCGGCATCGGCACCGGTGCACCACTCTGCCAATGCCGGCTACTGCAAGCCAGCTGGGTCAAAGAAGAAGAAGGAACACCACAAGAATAAAGAAGGGGGTTTTTTTCGTAAGATCAAGGATGTCTTTTCTGACCACAGCAGTGACAGCAGTGACAGTGAAAATGAATGTCACAAACCTCATCACAACAAGAAGAATTGA

Coding sequence (CDS)

ATGGCATCTCTGCAATGCAACAAACCAGCTGATCATGGGCACAGCCAGCACCAGCAGAAGCATGACCAACAGCATAACCATTGCTTCGGCGGCCACGTCTCCGACAAGATCACAGGCGTCTTCAAAGGCCACCATCATGGCCAGGCTCCACTGGCATCGGCATCGGCACCGGTGCACCACTCTGCCAATGCCGGCTACTGCAAGCCAGCTGGGTCAAAGAAGAAGAAGGAACACCACAAGAATAAAGAAGGGGGTTTTTTTCGTAAGATCAAGGATGTCTTTTCTGACCACAGCAGTGACAGCAGTGACAGTGAAAATGAATGTCACAAACCTCATCACAACAAGAAGAATTGA

Protein sequence

MASLQCNKPADHGHSQHQQKHDQQHNHCFGGHVSDKITGVFKGHHHGQAPLASASAPVHHSANAGYCKPAGSKKKKEHHKNKEGGFFRKIKDVFSDHSSDSSDSENECHKPHHNKKN
Homology
BLAST of HG10009061 vs. NCBI nr
Match: XP_038875375.1 (uncharacterized protein LOC120067846 [Benincasa hispida])

HSP 1 Score: 195.3 bits (495), Expect = 3.0e-46
Identity = 100/117 (85.47%), Postives = 102/117 (87.18%), Query Frame = 0

Query: 1   MASLQCNKPADHGHSQHQQKHDQQHNHCFGGHVSDKITGVFKGHHHGQAPLASASAPVHH 60
           MASLQCNKPADH     QQKHDQQH+HCFGGHVSDKI GVFKGHHHGQAPL  ASAPVHH
Sbjct: 1   MASLQCNKPADH----DQQKHDQQHHHCFGGHVSDKIKGVFKGHHHGQAPL--ASAPVHH 60

Query: 61  SANAGYCKPAGSKKKKEHHKNKEGGFFRKIKDVFSDHSSDSSDSENECHKPHHNKKN 118
           SANA +CKP GSKKKKEHHKNKEGG   KIKD FSDHSSDSSDSENEC KPHHNKKN
Sbjct: 61  SANASHCKPTGSKKKKEHHKNKEGGLLHKIKDAFSDHSSDSSDSENECDKPHHNKKN 111

BLAST of HG10009061 vs. NCBI nr
Match: XP_008437383.1 (PREDICTED: uncharacterized protein LOC103482815 [Cucumis melo])

HSP 1 Score: 166.0 bits (419), Expect = 1.9e-37
Identity = 89/118 (75.42%), Postives = 93/118 (78.81%), Query Frame = 0

Query: 1   MASLQCNKPADHGHSQHQQKHDQQH-NHCFGGHVSDKITGVF-KGHHHGQAPLASASAPV 60
           MA  QC KPADH H QHQQKHDQQH +HCFGGHVSDKI GVF KGHHH QA    AS  V
Sbjct: 1   MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGHHHDQA--HPASGAV 60

Query: 61  HHSANAGYCKPAGSKKKKEHHKNKEGGFFRKIKDVFSDHSSDSSDSENECHKPHHNKK 117
           HHSAN  +CK +GSKKKKEH   KEGG   KIK+ FSDHSSDSSDSENECHKPHHNKK
Sbjct: 61  HHSANDSHCKGSGSKKKKEHQVKKEGGLLHKIKEAFSDHSSDSSDSENECHKPHHNKK 116

BLAST of HG10009061 vs. NCBI nr
Match: XP_022146004.1 (uncharacterized protein LOC111015315 [Momordica charantia])

HSP 1 Score: 118.2 bits (295), Expect = 4.6e-23
Identity = 76/118 (64.41%), Postives = 81/118 (68.64%), Query Frame = 0

Query: 1   MASLQCNKPADHGHSQHQQKHDQQHNHCFGGHVSDKITGVFKGH-HHGQAPLASASAPVH 60
           MASLQC+KPAD  HSQ+ QKHDQ   HCF GHVSDKI GVFKGH HHGQAP     A  H
Sbjct: 1   MASLQCSKPADQQHSQN-QKHDQ--GHCF-GHVSDKIKGVFKGHGHHGQAP----GAAPH 60

Query: 61  HSANAGYCKPAG-SKKKKEHHKNKEGGFFRKIKDVFSDHSSDSSDSENECHKPHHNKK 117
           HS N      A  S K+KE HKNK+G    KIKD FSDHSSDSSDS+NE HK H   K
Sbjct: 61  HSTNVNANANASVSHKEKEQHKNKDGNLLHKIKDAFSDHSSDSSDSDNEGHKAHRKSK 110

BLAST of HG10009061 vs. NCBI nr
Match: KAA0042689.1 (uncharacterized protein E6C27_scaffold44G001870 [Cucumis melo var. makuwa] >TYK06092.1 uncharacterized protein E5676_scaffold376G001930 [Cucumis melo var. makuwa])

HSP 1 Score: 112.5 bits (280), Expect = 2.5e-21
Identity = 62/86 (72.09%), Postives = 65/86 (75.58%), Query Frame = 0

Query: 1  MASLQCNKPADHGHSQHQQKHDQQH-NHCFGGHVSDKITGVF-KGHHHGQAPLASASAPV 60
          MA  QC KPADH H QHQQKHDQQH +HCFGGHVSDKI GVF KGHHH QA    AS  V
Sbjct: 1  MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGHHHDQA--HPASGAV 60

Query: 61 HHSANAGYCKPAGSKKKKEHHKNKEG 85
          HHSAN  +CK +GSKKKKEH   KEG
Sbjct: 61 HHSANDSHCKGSGSKKKKEHQVKKEG 84

BLAST of HG10009061 vs. NCBI nr
Match: XP_022958513.1 (glycine-rich cell wall structural protein 1-like [Cucurbita moschata])

HSP 1 Score: 59.3 bits (142), Expect = 2.6e-05
Identity = 47/114 (41.23%), Postives = 54/114 (47.37%), Query Frame = 0

Query: 6   CNKPADHGHSQ-----HQQKHDQQHNH-CFGGHVSDKITGVFKGHHHGQAPLASASAPVH 65
           C     HGH       H       H H   GGH          GH     P      P  
Sbjct: 419 CGPAGGHGHGHGPAGGHDHGQAGGHGHGPAGGHGHCMPANPNIGHCQPANPNVGHCQPA- 478

Query: 66  HSANAGYCKPAGSKKKKEHHKNKEGGFFRKIKDVFSDHSSDSSDSENECHKPHH 114
            S N G+CK AG  +KK HHKNKEGGF  KIKD FSDH SD+SDS+++C +  H
Sbjct: 479 -SPNVGHCK-AGGSRKKGHHKNKEGGFLNKIKDAFSDH-SDNSDSDDDCRRGRH 528

BLAST of HG10009061 vs. ExPASy TrEMBL
Match: A0A1S3AUH3 (uncharacterized protein LOC103482815 OS=Cucumis melo OX=3656 GN=LOC103482815 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 9.4e-38
Identity = 89/118 (75.42%), Postives = 93/118 (78.81%), Query Frame = 0

Query: 1   MASLQCNKPADHGHSQHQQKHDQQH-NHCFGGHVSDKITGVF-KGHHHGQAPLASASAPV 60
           MA  QC KPADH H QHQQKHDQQH +HCFGGHVSDKI GVF KGHHH QA    AS  V
Sbjct: 1   MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGHHHDQA--HPASGAV 60

Query: 61  HHSANAGYCKPAGSKKKKEHHKNKEGGFFRKIKDVFSDHSSDSSDSENECHKPHHNKK 117
           HHSAN  +CK +GSKKKKEH   KEGG   KIK+ FSDHSSDSSDSENECHKPHHNKK
Sbjct: 61  HHSANDSHCKGSGSKKKKEHQVKKEGGLLHKIKEAFSDHSSDSSDSENECHKPHHNKK 116

BLAST of HG10009061 vs. ExPASy TrEMBL
Match: A0A6J1CWW2 (uncharacterized protein LOC111015315 OS=Momordica charantia OX=3673 GN=LOC111015315 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.2e-23
Identity = 76/118 (64.41%), Postives = 81/118 (68.64%), Query Frame = 0

Query: 1   MASLQCNKPADHGHSQHQQKHDQQHNHCFGGHVSDKITGVFKGH-HHGQAPLASASAPVH 60
           MASLQC+KPAD  HSQ+ QKHDQ   HCF GHVSDKI GVFKGH HHGQAP     A  H
Sbjct: 1   MASLQCSKPADQQHSQN-QKHDQ--GHCF-GHVSDKIKGVFKGHGHHGQAP----GAAPH 60

Query: 61  HSANAGYCKPAG-SKKKKEHHKNKEGGFFRKIKDVFSDHSSDSSDSENECHKPHHNKK 117
           HS N      A  S K+KE HKNK+G    KIKD FSDHSSDSSDS+NE HK H   K
Sbjct: 61  HSTNVNANANASVSHKEKEQHKNKDGNLLHKIKDAFSDHSSDSSDSDNEGHKAHRKSK 110

BLAST of HG10009061 vs. ExPASy TrEMBL
Match: A0A5A7TMV4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001930 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.2e-21
Identity = 62/86 (72.09%), Postives = 65/86 (75.58%), Query Frame = 0

Query: 1  MASLQCNKPADHGHSQHQQKHDQQH-NHCFGGHVSDKITGVF-KGHHHGQAPLASASAPV 60
          MA  QC KPADH H QHQQKHDQQH +HCFGGHVSDKI GVF KGHHH QA    AS  V
Sbjct: 1  MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGHHHDQA--HPASGAV 60

Query: 61 HHSANAGYCKPAGSKKKKEHHKNKEG 85
          HHSAN  +CK +GSKKKKEH   KEG
Sbjct: 61 HHSANDSHCKGSGSKKKKEHQVKKEG 84

BLAST of HG10009061 vs. ExPASy TrEMBL
Match: A0A6J1H399 (glycine-rich cell wall structural protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111459722 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.2e-05
Identity = 47/114 (41.23%), Postives = 54/114 (47.37%), Query Frame = 0

Query: 6   CNKPADHGHSQ-----HQQKHDQQHNH-CFGGHVSDKITGVFKGHHHGQAPLASASAPVH 65
           C     HGH       H       H H   GGH          GH     P      P  
Sbjct: 419 CGPAGGHGHGHGPAGGHDHGQAGGHGHGPAGGHGHCMPANPNIGHCQPANPNVGHCQPA- 478

Query: 66  HSANAGYCKPAGSKKKKEHHKNKEGGFFRKIKDVFSDHSSDSSDSENECHKPHH 114
            S N G+CK AG  +KK HHKNKEGGF  KIKD FSDH SD+SDS+++C +  H
Sbjct: 479 -SPNVGHCK-AGGSRKKGHHKNKEGGFLNKIKDAFSDH-SDNSDSDDDCRRGRH 528

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038875375.13.0e-4685.47uncharacterized protein LOC120067846 [Benincasa hispida][more]
XP_008437383.11.9e-3775.42PREDICTED: uncharacterized protein LOC103482815 [Cucumis melo][more]
XP_022146004.14.6e-2364.41uncharacterized protein LOC111015315 [Momordica charantia][more]
KAA0042689.12.5e-2172.09uncharacterized protein E6C27_scaffold44G001870 [Cucumis melo var. makuwa] >TYK0... [more]
XP_022958513.12.6e-0541.23glycine-rich cell wall structural protein 1-like [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3AUH39.4e-3875.42uncharacterized protein LOC103482815 OS=Cucumis melo OX=3656 GN=LOC103482815 PE=... [more]
A0A6J1CWW22.2e-2364.41uncharacterized protein LOC111015315 OS=Momordica charantia OX=3673 GN=LOC111015... [more]
A0A5A7TMV41.2e-2172.09Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1H3991.2e-0541.23glycine-rich cell wall structural protein 1-like OS=Cucurbita moschata OX=3662 G... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..111
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 13..29
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..117

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10009061.1HG10009061.1mRNA