HG10009055 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10009055
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Trehalase 1
Location	Chr06: 2073820 .. 2074993 (-)
RNA-Seq Expression	HG10009055
Synteny	HG10009055

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATTCGTAGGAAGCCCGGTTGGGCTACTCGATACACAGAATGAAAAGGTTTCGTTTTTCATGGCAAAAATCAAATTAAATACAACCAAAGTATTCAGACAACACCGAAAATGTATTTTAAATGCAGAAAGTACTCAAAATGTAAGATTTTTCGGTCAAAATCTAGATGCCAAAAAAACTCTAGCTCAAAACAGTGAAAAAAACAACCTAGTGAATATAAACATGCAAAACTCATTTAAACAGTACATGAATCCATCATTTTTAAAAATGCATCAAAAAATCATCAAACAAAAAAAACCCGCAAAAAATGAGAATGATCGAAATGTACCTTGTTGTAAATGAAACCTTAAAAAATAGCTTGAAAAACCGTTAATGACAAATGAAGAAAACAAATCGTGAGCGATTTCTGAGTTTGGAGATCAAAGATTTTGAAGAAAATGTAGGAAGATAAGGAAAGTGAAGAGGTGGAAGAACGAAGGTGAAGAGGTGGGAGAAGAAAGGGTGAGATTATTTGAAATGTTGAGAGTAAAATGGTAATTTCACAATGATGGGTAGAATGATAATTTTCTATGTTTGGGTAAAATGGTAATTTCATATTTTATAAAAAGTGAAAAGAGTTTAAAATAAAAGAAAAAACTTGAAGGGGTCATTTATAAAAAAAAACTTGTGAAAGGGTTAAAAAATGTAAATTACCCAAAAAAAAAAAAAATGGAATATTTGAATTTTGTAGCTTTTATTTTCCGTAAAAATAAAGGGGGATTTGTTTTAATCTTTTATTTTCGTTGTGCCCTAGCTTGAGATTGAACCTTCGATTTCATCTCCCAATTCCTCTCGCAAATCACTTCCACCAACTGCAAATTTCGAATTCCATTCTTCAATCGGCATTCGGAATCCCGTCGGAAAGCTTTGCTCAGATCGGATGGAAAACACCGACAATAACGCCCTGAGTATCCTTTCACGGGAGAAGCTCGACCAAGTCGCGGCCTGGGTAGCCGCCACCATGTCTTCCGCCTTTTTCTCCTCCTTAGAACGATTCTCCTGCGTCAACATTGCCACCAATGATCTTGACGACGAAGACGACGACGACCAGCTTCTCTTGTCCAATCAGCCGCTTTCCGATCAAATTTTACTCTCTGACCAACATGACGGGTTTGTCGATCTTCCAGTGTGA

mRNA sequence

ATGACATTCGTAGGAAGCCCGGTTGGGCTACTCGATACACAGAATGAAAAGGTTTCGTTTTTCATGGCAAAAATCAAATTAAATACAACCAAAGTATTCAGACAACACCGAAAATGTATTTTAAATGCAGAAAGTACTCAAAATCTTGAGATTGAACCTTCGATTTCATCTCCCAATTCCTCTCGCAAATCACTTCCACCAACTGCAAATTTCGAATTCCATTCTTCAATCGGCATTCGGAATCCCGTCGGAAAGCTTTGCTCAGATCGGATGGAAAACACCGACAATAACGCCCTGAGTATCCTTTCACGGGAGAAGCTCGACCAAGTCGCGGCCTGGGTAGCCGCCACCATGTCTTCCGCCTTTTTCTCCTCCTTAGAACGATTCTCCTGCGTCAACATTGCCACCAATGATCTTGACGACGAAGACGACGACGACCAGCTTCTCTTGTCCAATCAGCCGCTTTCCGATCAAATTTTACTCTCTGACCAACATGACGGGTTTGTCGATCTTCCAGTGTGA

Coding sequence (CDS)

ATGACATTCGTAGGAAGCCCGGTTGGGCTACTCGATACACAGAATGAAAAGGTTTCGTTTTTCATGGCAAAAATCAAATTAAATACAACCAAAGTATTCAGACAACACCGAAAATGTATTTTAAATGCAGAAAGTACTCAAAATCTTGAGATTGAACCTTCGATTTCATCTCCCAATTCCTCTCGCAAATCACTTCCACCAACTGCAAATTTCGAATTCCATTCTTCAATCGGCATTCGGAATCCCGTCGGAAAGCTTTGCTCAGATCGGATGGAAAACACCGACAATAACGCCCTGAGTATCCTTTCACGGGAGAAGCTCGACCAAGTCGCGGCCTGGGTAGCCGCCACCATGTCTTCCGCCTTTTTCTCCTCCTTAGAACGATTCTCCTGCGTCAACATTGCCACCAATGATCTTGACGACGAAGACGACGACGACCAGCTTCTCTTGTCCAATCAGCCGCTTTCCGATCAAATTTTACTCTCTGACCAACATGACGGGTTTGTCGATCTTCCAGTGTGA

Protein sequence

MTFVGSPVGLLDTQNEKVSFFMAKIKLNTTKVFRQHRKCILNAESTQNLEIEPSISSPNSSRKSLPPTANFEFHSSIGIRNPVGKLCSDRMENTDNNALSILSREKLDQVAAWVAATMSSAFFSSLERFSCVNIATNDLDDEDDDDQLLLSNQPLSDQILLSDQHDGFVDLPV

Homology

[Close]

BLAST of HG10009055 vs. NCBI nr
Match: XP_008437391.1 (PREDICTED: uncharacterized protein LOC103482822 [Cucumis melo] >KAA0042683.1 Trehalase 1 [Cucumis melo var. makuwa] >TYK06086.1 Trehalase 1 [Cucumis melo var. makuwa])

HSP 1 Score: 151.4 bits (381), Expect = 7.3e-33
Identity = 77/83 (92.77%), Postives = 79/83 (95.18%), Query Frame = 0


Query: 91  MENTDNNALSILSREKLDQVAAWVAATMSSAFFSSLERFSCVNIATNDLDDEDDDDQLLL 150
           MENTDNNALSILSREKLDQVAAWVAATMSSAFFSSLERFSCVN+ATNDLDD+DDDD LLL
Sbjct: 1   MENTDNNALSILSREKLDQVAAWVAATMSSAFFSSLERFSCVNVATNDLDDDDDDDDLLL 60

Query: 151 SNQPLSDQILLSDQHDGFVDLPV 174
           S QPLSDQIL  DQHDGFVDLPV
Sbjct: 61  STQPLSDQILPPDQHDGFVDLPV 83

[Close]

BLAST of HG10009055 vs. NCBI nr
Match: KAE8647837.1 (hypothetical protein Csa_000196 [Cucumis sativus])

HSP 1 Score: 135.2 bits (339), Expect = 5.4e-28
Identity = 70/79 (88.61%), Postives = 75/79 (94.94%), Query Frame = 0


Query: 91  MENTDNNALSILSREKLDQVAAWVAATMSSAFFSSLERFSCVNIATNDL-DDEDDDDQLL 150
           MENTDNNALSILSREKLDQVAAWVAATMSSAFFSSLERFSCV++ATN+L DD+DDDD LL
Sbjct: 1   MENTDNNALSILSREKLDQVAAWVAATMSSAFFSSLERFSCVHVATNELDDDDDDDDHLL 60

Query: 151 LSNQPLSDQILLSDQHDGF 169
           LS QPLSDQILL DQHDG+
Sbjct: 61  LSTQPLSDQILLPDQHDGY 79

[Close]

BLAST of HG10009055 vs. NCBI nr
Match: KAG6605572.1 (hypothetical protein SDJN03_02889, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035486.1 hypothetical protein SDJN02_02282, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 128.6 bits (322), Expect = 5.1e-26
Identity = 70/84 (83.33%), Postives = 73/84 (86.90%), Query Frame = 0


Query: 91  MENTDNNALSILSREKLDQVAAWVAATMSSAFFSSLERFSCVNIATNDLDDEDDDD-QLL 150
           MENT+NN LSILSREKLDQVAAWVAATMSSAFFSSLERFSCVNIATND DD+DDDD Q L
Sbjct: 1   MENTNNNVLSILSREKLDQVAAWVAATMSSAFFSSLERFSCVNIATNDPDDDDDDDNQFL 60

Query: 151 LSNQPLSDQILLSDQHDGFVDLPV 174
            S+Q  SDQ   SDQ DGFVDLPV
Sbjct: 61  ASDQLRSDQFPSSDQQDGFVDLPV 84

[Close]

BLAST of HG10009055 vs. NCBI nr
Match: ONI07532.1 (hypothetical protein PRUPE_5G126200 [Prunus persica] >CAB4280240.1 unnamed protein product [Prunus armeniaca] >CAB4310654.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 80.5 bits (197), Expect = 1.6e-11
Identity = 41/56 (73.21%), Postives = 50/56 (89.29%), Query Frame = 0


Query: 91  MENTDNNALSILSREKLDQVAAWVAATMSSAFFSSLERFSCVNIATNDLDDEDDDD 147
           MEN +N   SI+SREKLDQVA+WV+AT+S+AFFSSLERFSCVN+AT D DDED+D+
Sbjct: 1   MENGNN---SIISREKLDQVASWVSATVSTAFFSSLERFSCVNLATTDFDDEDEDE 53

[Close]

BLAST of HG10009055 vs. NCBI nr
Match: OAY56306.1 (hypothetical protein MANES_02G005600v8 [Manihot esculenta])

HSP 1 Score: 79.7 bits (195), Expect = 2.7e-11
Identity = 47/86 (54.65%), Postives = 60/86 (69.77%), Query Frame = 0


Query: 91  MENTDN---NALSILSREKLDQVAAWVAATMSSAFFSSLERFSCVNIATNDLDDEDDDDQ 150
           MEN +N   N  +I+S E L+QVA WV+AT+ SAFFSSLERFSCVN+ATND DD+D++D+
Sbjct: 1   MENNNNAPTNTTAIVSMENLNQVANWVSATVISAFFSSLERFSCVNVATNDPDDDDNEDE 60

Query: 151 LLLSNQPLSDQILLSDQHDGFVDLPV 174
             +    LS+    S Q D   DLPV
Sbjct: 61  AKVRPLTLSNN---SHQGDDVSDLPV 83

[Close]

BLAST of HG10009055 vs. ExPASy TrEMBL
Match: A0A5A7THD9 (Trehalase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001870 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 3.5e-33
Identity = 77/83 (92.77%), Postives = 79/83 (95.18%), Query Frame = 0


Query: 91  MENTDNNALSILSREKLDQVAAWVAATMSSAFFSSLERFSCVNIATNDLDDEDDDDQLLL 150
           MENTDNNALSILSREKLDQVAAWVAATMSSAFFSSLERFSCVN+ATNDLDD+DDDD LLL
Sbjct: 1   MENTDNNALSILSREKLDQVAAWVAATMSSAFFSSLERFSCVNVATNDLDDDDDDDDLLL 60

Query: 151 SNQPLSDQILLSDQHDGFVDLPV 174
           S QPLSDQIL  DQHDGFVDLPV
Sbjct: 61  STQPLSDQILPPDQHDGFVDLPV 83

[Close]

BLAST of HG10009055 vs. ExPASy TrEMBL
Match: A0A1S3AUH1 (uncharacterized protein LOC103482822 OS=Cucumis melo OX=3656 GN=LOC103482822 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 3.5e-33
Identity = 77/83 (92.77%), Postives = 79/83 (95.18%), Query Frame = 0


Query: 91  MENTDNNALSILSREKLDQVAAWVAATMSSAFFSSLERFSCVNIATNDLDDEDDDDQLLL 150
           MENTDNNALSILSREKLDQVAAWVAATMSSAFFSSLERFSCVN+ATNDLDD+DDDD LLL
Sbjct: 1   MENTDNNALSILSREKLDQVAAWVAATMSSAFFSSLERFSCVNVATNDLDDDDDDDDLLL 60

Query: 151 SNQPLSDQILLSDQHDGFVDLPV 174
           S QPLSDQIL  DQHDGFVDLPV
Sbjct: 61  STQPLSDQILPPDQHDGFVDLPV 83

[Close]

BLAST of HG10009055 vs. ExPASy TrEMBL
Match: A0A0A0KK32 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G150380 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.5e-31
Identity = 76/84 (90.48%), Postives = 80/84 (95.24%), Query Frame = 0


Query: 91  MENTDNNALSILSREKLDQVAAWVAATMSSAFFSSLERFSCVNIATNDL-DDEDDDDQLL 150
           MENTDNNALSILSREKLDQVAAWVAATMSSAFFSSLERFSCV++ATN+L DD+DDDD LL
Sbjct: 1   MENTDNNALSILSREKLDQVAAWVAATMSSAFFSSLERFSCVHVATNELDDDDDDDDHLL 60

Query: 151 LSNQPLSDQILLSDQHDGFVDLPV 174
           LS QPLSDQILL DQHDGFVDLPV
Sbjct: 61  LSTQPLSDQILLPDQHDGFVDLPV 84

[Close]

BLAST of HG10009055 vs. ExPASy TrEMBL
Match: M5WNZ8 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G126200 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 7.7e-12
Identity = 41/56 (73.21%), Postives = 50/56 (89.29%), Query Frame = 0


Query: 91  MENTDNNALSILSREKLDQVAAWVAATMSSAFFSSLERFSCVNIATNDLDDEDDDD 147
           MEN +N   SI+SREKLDQVA+WV+AT+S+AFFSSLERFSCVN+AT D DDED+D+
Sbjct: 1   MENGNN---SIISREKLDQVASWVSATVSTAFFSSLERFSCVNLATTDFDDEDEDE 53

[Close]

BLAST of HG10009055 vs. ExPASy TrEMBL
Match: A0A6J5UUI8 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS33053 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 7.7e-12
Identity = 41/56 (73.21%), Postives = 50/56 (89.29%), Query Frame = 0


Query: 91  MENTDNNALSILSREKLDQVAAWVAATMSSAFFSSLERFSCVNIATNDLDDEDDDD 147
           MEN +N   SI+SREKLDQVA+WV+AT+S+AFFSSLERFSCVN+AT D DDED+D+
Sbjct: 1   MENGNN---SIISREKLDQVASWVSATVSTAFFSSLERFSCVNLATTDFDDEDEDE 53

[Close]

BLAST of HG10009055 vs. TAIR 10
Match: AT4G10810.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24026.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-09
Identity = 35/65 (53.85%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 99  LSILSREKLDQVAAWVAATMSSAFFSSLERFSCVNIATNDLDDEDDDDQ---LLLSNQPL 158
           LS  S EKLDQ A+WV+ T+ SAFF+SLER SCVN++T+D DDE ++     L LS  P 
Sbjct: 17  LSTASLEKLDQAASWVSTTVISAFFASLERCSCVNLSTSDDDDEGEESHNRPLALSAAPH 76

Query: 159 SDQIL 161
            D I+
Sbjct: 77  PDDIV 81

[Close]

BLAST of HG10009055 vs. TAIR 10
Match: AT4G24026.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-09
Identity = 28/59 (47.46%), Postives = 44/59 (74.58%), Query Frame = 0


Query: 89  DRMENTDNNALSILSREKLDQVAAWVAATMSSAFFSSLERFSCVNIATNDLDDEDDDDQ 148
           D+  +  +N  +  S EK+D  A+W++AT+ SAFF+SLER +CVN++T+  DD+DDDD+
Sbjct: 2   DKSISITSNVSTTTSMEKIDHAASWISATVISAFFTSLERCACVNLSTSHDDDDDDDDE 60

The following BLAST results are available for this feature:

BLAST of HG10009055 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008437391.1	7.3e-33	92.77	PREDICTED: uncharacterized protein LOC103482822 [Cucumis melo] >KAA0042683.1 Tre...	[more]
KAE8647837.1	5.4e-28	88.61	hypothetical protein Csa_000196 [Cucumis sativus]	[more]
KAG6605572.1	5.1e-26	83.33	hypothetical protein SDJN03_02889, partial [Cucurbita argyrosperma subsp. sorori...	[more]
ONI07532.1	1.6e-11	73.21	hypothetical protein PRUPE_5G126200 [Prunus persica] >CAB4280240.1 unnamed prote...	[more]
OAY56306.1	2.7e-11	54.65	hypothetical protein MANES_02G005600v8 [Manihot esculenta]	[more]

BLAST of HG10009055 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10009055 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7THD9	3.5e-33	92.77	Trehalase 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001870 P...	[more]
A0A1S3AUH1	3.5e-33	92.77	uncharacterized protein LOC103482822 OS=Cucumis melo OX=3656 GN=LOC103482822 PE=...	[more]
A0A0A0KK32	1.5e-31	90.48	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G150380 PE=4 SV=1	[more]
M5WNZ8	7.7e-12	73.21	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G126200 PE=4 SV=1	[more]
A0A6J5UUI8	7.7e-12	73.21	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS33053 PE=4 S...	[more]

BLAST of HG10009055 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G10810.1	1.2e-09	53.85	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G24026.1	1.2e-09	47.46	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34061:SF9	SUBFAMILY NOT NAMED	coord: 90..173
None	No IPR available	PANTHER	PTHR34061	PROTEIN, PUTATIVE-RELATED	coord: 90..173

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10009055.1	HG10009055.1	mRNA