HG10009049 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10009049
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	DNA-directed RNA polymerase
Location	Chr06: 2009933 .. 2010481 (-)
RNA-Seq Expression	HG10009049
Synteny	HG10009049

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTTCCCCTCGTCCTCACAACCCTCTCTCCACTATCCCTTTTCGAGAGAAACCCACTTTTCTCCATGCTGGCACATCTTTTTCCACATCAACAAATAAAAAAAATCTTCCTTTCATTGGTTCGGATACCGAAGGATACCTCTCTAGTCCCCATCCTTTGGATGTGACTATCTTTGATGATGAGCCAGTCGAAGATAATCTACCTTTATGCACCCTTCCCCCTCTCCCACCCGACATCAGCCCTAGACAAGGCCCTTCACCCGACAACTCGACCTCTCCCCTTTCCTCTTATCCTATTCACCAAGCTCACCCGACCTCCTCAACAAACCCGCCATTCAACCTAAATGATTTAGCAACTCTCTTATCAAACCATGATTTGTGTGTTATGGCCATTCCATCTTCCCATCCACCTCCAAAAATAAAAAAACCAACAAAAGCAACAGGAAAAAAAACCAAACTCCAAAGAGAGACTCAAGGCCTTTATTCATCGATCAACTATGACAAATCAGCTACCTTGGCGATTCGGGAGGGCTTCTTGACAAACTAA

mRNA sequence

ATGCTTTCCCCTCGTCCTCACAACCCTCTCTCCACTATCCCTTTTCGAGAGAAACCCACTTTTCTCCATGCTGGCACATCTTTTTCCACATCAACAAATAAAAAAAATCTTCCTTTCATTGGTTCGGATACCGAAGGATACCTCTCTAGTCCCCATCCTTTGGATGTGACTATCTTTGATGATGAGCCAGTCGAAGATAATCTACCTTTATGCACCCTTCCCCCTCTCCCACCCGACATCAGCCCTAGACAAGGCCCTTCACCCGACAACTCGACCTCTCCCCTTTCCTCTTATCCTATTCACCAAGCTCACCCGACCTCCTCAACAAACCCGCCATTCAACCTAAATGATTTAGCAACTCTCTTATCAAACCATGATTTGTGTGTTATGGCCATTCCATCTTCCCATCCACCTCCAAAAATAAAAAAACCAACAAAAGCAACAGGAAAAAAAACCAAACTCCAAAGAGAGACTCAAGGCCTTTATTCATCGATCAACTATGACAAATCAGCTACCTTGGCGATTCGGGAGGGCTTCTTGACAAACTAA

Coding sequence (CDS)

ATGCTTTCCCCTCGTCCTCACAACCCTCTCTCCACTATCCCTTTTCGAGAGAAACCCACTTTTCTCCATGCTGGCACATCTTTTTCCACATCAACAAATAAAAAAAATCTTCCTTTCATTGGTTCGGATACCGAAGGATACCTCTCTAGTCCCCATCCTTTGGATGTGACTATCTTTGATGATGAGCCAGTCGAAGATAATCTACCTTTATGCACCCTTCCCCCTCTCCCACCCGACATCAGCCCTAGACAAGGCCCTTCACCCGACAACTCGACCTCTCCCCTTTCCTCTTATCCTATTCACCAAGCTCACCCGACCTCCTCAACAAACCCGCCATTCAACCTAAATGATTTAGCAACTCTCTTATCAAACCATGATTTGTGTGTTATGGCCATTCCATCTTCCCATCCACCTCCAAAAATAAAAAAACCAACAAAAGCAACAGGAAAAAAAACCAAACTCCAAAGAGAGACTCAAGGCCTTTATTCATCGATCAACTATGACAAATCAGCTACCTTGGCGATTCGGGAGGGCTTCTTGACAAACTAA

Protein sequence

MLSPRPHNPLSTIPFREKPTFLHAGTSFSTSTNKKNLPFIGSDTEGYLSSPHPLDVTIFDDEPVEDNLPLCTLPPLPPDISPRQGPSPDNSTSPLSSYPIHQAHPTSSTNPPFNLNDLATLLSNHDLCVMAIPSSHPPPKIKKPTKATGKKTKLQRETQGLYSSINYDKSATLAIREGFLTN

Homology

[Close]

BLAST of HG10009049 vs. NCBI nr
Match: TYK05133.1 (hypothetical protein E5676_scaffold1769G00370 [Cucumis melo var. makuwa])

HSP 1 Score: 102.4 bits (254), Expect = 4.1e-18
Identity = 63/128 (49.22%), Postives = 78/128 (60.94%), Query Frame = 0


Query: 52  HPLDVTIFDDEPVEDNLPLCTLPPLPPDI-SPRQGPSPDNSTSPLSSYPIHQAHPTSSTN 111
           H L+  +F + P E +LP+  LPP+P D  SP Q P P       S  P     P++ST 
Sbjct: 51  HSLENAVFGENPSESDLPITILPPVPTDFHSPMQHPIP-------SKQPSTSDIPSTSTA 110

Query: 112 PPFNLNDLATLLSNHDLCVMAIPSSHPPPKIKKPTKATGKKTKLQRETQGLYSSINYDKS 171
            P +L D+A++L  H LCVMAIPS  PPPK+KKP  A  ++ KLQRE Q L SSI YDKS
Sbjct: 111 TPISLRDIASILLQHGLCVMAIPSL-PPPKLKKPYTANTERNKLQRELQNLQSSICYDKS 170

Query: 172 ATLAIREG 179
             LA REG
Sbjct: 171 LALANREG 170

[Close]

BLAST of HG10009049 vs. NCBI nr
Match: KAA0050510.1 (hypothetical protein E6C27_scaffold175G001530 [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 5.9e-09
Identity = 54/125 (43.20%), Postives = 70/125 (56.00%), Query Frame = 0


Query: 54  LDVTIFDDEPVEDNLPLCTLPPLPPDISPRQGPSPDNSTSPLSSYPIHQAHPTSSTNPPF 113
           LDV IF ++P E +  L  LPP+P D++     SP   TS  SS  I+  HP +++    
Sbjct: 48  LDVAIFGEDPTEAHQLLLILPPIPKDLNRLVHSSPTPLTS-TSSQTINVPHPPANS---L 107

Query: 114 NLNDLATLLSNHDLCVMAIPSSHPPPKIKKPTKATGKKTKLQRETQGLYSSINYDKSATL 173
           NL  L   L + DL V+ +    P  K K+      K+ KLQRE Q L+ SINYDKSATL
Sbjct: 108 NLQGLPQSLLHMDL-VLWLFLLFPGQKNKRMASTASKRAKLQRELQNLHCSINYDKSATL 167

Query: 174 AIREG 179
           AI EG
Sbjct: 168 AISEG 167

[Close]

BLAST of HG10009049 vs. NCBI nr
Match: KAA0063298.1 (hypothetical protein E6C27_scaffold205G001210 [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 1.2e-04
Identity = 38/76 (50.00%), Postives = 47/76 (61.84%), Query Frame = 0


Query: 79  DISPRQGPSPDNSTSPLSSYPIHQAHPTSSTNPPFNLNDLATLLSNHDLCVMAIPSSHPP 138
           D +P Q P P  ST P +SY      P+ ST  P +L D+A++L  H LCVMAIPS  PP
Sbjct: 163 DKNPIQHPIP--STRPSTSY-----IPSRSTATPISLRDMASILLQHGLCVMAIPSL-PP 222

Query: 139 PKIKKPTKATGKKTKL 155
           PK+KKP  A  K+ KL
Sbjct: 223 PKVKKPYTANSKRNKL 230

[Close]

BLAST of HG10009049 vs. NCBI nr
Match: TYK31477.1 (hypothetical protein E5676_scaffold455G007930 [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 4.4e-04
Identity = 34/67 (50.75%), Postives = 43/67 (64.18%), Query Frame = 0


Query: 88  PDNSTSPLSSYPIHQAHPTSSTNPPFNLNDLATLLSNHDLCVMAIPSSHPPPKIKKPTKA 147
           P +ST P +SY      P+ ST  P +L D+A++L  H LCVMAIPS  PPPK+KKP  A
Sbjct: 170 PISSTRPSTSY-----IPSRSTATPISLRDMASILLQHGLCVMAIPSL-PPPKVKKPYTA 229

Query: 148 TGKKTKL 155
             K+ KL
Sbjct: 230 NSKRHKL 230

[Close]

BLAST of HG10009049 vs. NCBI nr
Match: KAA0064805.1 (DNA-directed RNA polymerase I subunit 2 [Cucumis melo var. makuwa])

HSP 1 Score: 54.7 bits (130), Expect = 9.8e-04
Identity = 29/47 (61.70%), Postives = 32/47 (68.09%), Query Frame = 0


Query: 133 PSSHPPPKIKKPTKATGKKTKLQRETQGLYSSINYDKSATLAIREGF 180
           PS  PPPK KKP  A  K+ KLQRE Q L SSI Y KS TLA R+G+
Sbjct: 7   PSPLPPPKAKKPYTANSKRNKLQRELQNLQSSICYKKSLTLANRDGY 53

[Close]

BLAST of HG10009049 vs. ExPASy TrEMBL
Match: A0A5D3BZG4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1769G00370 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.0e-18
Identity = 63/128 (49.22%), Postives = 78/128 (60.94%), Query Frame = 0


Query: 52  HPLDVTIFDDEPVEDNLPLCTLPPLPPDI-SPRQGPSPDNSTSPLSSYPIHQAHPTSSTN 111
           H L+  +F + P E +LP+  LPP+P D  SP Q P P       S  P     P++ST 
Sbjct: 51  HSLENAVFGENPSESDLPITILPPVPTDFHSPMQHPIP-------SKQPSTSDIPSTSTA 110

Query: 112 PPFNLNDLATLLSNHDLCVMAIPSSHPPPKIKKPTKATGKKTKLQRETQGLYSSINYDKS 171
            P +L D+A++L  H LCVMAIPS  PPPK+KKP  A  ++ KLQRE Q L SSI YDKS
Sbjct: 111 TPISLRDIASILLQHGLCVMAIPSL-PPPKLKKPYTANTERNKLQRELQNLQSSICYDKS 170

Query: 172 ATLAIREG 179
             LA REG
Sbjct: 171 LALANREG 170

[Close]

BLAST of HG10009049 vs. ExPASy TrEMBL
Match: A0A5A7U5M3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G001530 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.9e-09
Identity = 54/125 (43.20%), Postives = 70/125 (56.00%), Query Frame = 0


Query: 54  LDVTIFDDEPVEDNLPLCTLPPLPPDISPRQGPSPDNSTSPLSSYPIHQAHPTSSTNPPF 113
           LDV IF ++P E +  L  LPP+P D++     SP   TS  SS  I+  HP +++    
Sbjct: 48  LDVAIFGEDPTEAHQLLLILPPIPKDLNRLVHSSPTPLTS-TSSQTINVPHPPANS---L 107

Query: 114 NLNDLATLLSNHDLCVMAIPSSHPPPKIKKPTKATGKKTKLQRETQGLYSSINYDKSATL 173
           NL  L   L + DL V+ +    P  K K+      K+ KLQRE Q L+ SINYDKSATL
Sbjct: 108 NLQGLPQSLLHMDL-VLWLFLLFPGQKNKRMASTASKRAKLQRELQNLHCSINYDKSATL 167

Query: 174 AIREG 179
           AI EG
Sbjct: 168 AISEG 167

[Close]

BLAST of HG10009049 vs. ExPASy TrEMBL
Match: A0A0A0LHM7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G078070 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 5.4e-08
Identity = 58/147 (39.46%), Postives = 74/147 (50.34%), Query Frame = 0


Query: 35  KNLPFIGSDTEGYLSSPHPLDVT---IFDDEPVEDNLPLCTLPPLPPDISPRQGPSPDNS 94
           KN P   SD E YL+SP     T   I   +           P   P + P    SP   
Sbjct: 104 KNQPQTFSDLEAYLTSPSLKKTTLSLIRWKKLFWGKSQRIKSPTYYPTLVPTDLHSPIQQ 163

Query: 95  TSPLSSYPIHQAHPTSSTNPPFNLNDLATLLSNHDLCVMAIPSSHPPPKIKKPTKATGKK 154
           + PL+  P     P+SST  P +L D+A +L  H LCVMA+PS  P  K KKP     K+
Sbjct: 164 SIPLTK-PSPGDIPSSSTANPISLRDMAFILLQHGLCVMAVPSL-PLKKAKKPCTDNNKR 223

Query: 155 TKLQRETQGLYSSINYDKSATLAIREG 179
            KLQR+ Q L SSI YDK+++L  R+G
Sbjct: 224 NKLQRKLQTLQSSICYDKTSSLDNRKG 248

[Close]

BLAST of HG10009049 vs. ExPASy TrEMBL
Match: A0A5A7V6T7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold205G001210 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.6e-05
Identity = 38/76 (50.00%), Postives = 47/76 (61.84%), Query Frame = 0


Query: 79  DISPRQGPSPDNSTSPLSSYPIHQAHPTSSTNPPFNLNDLATLLSNHDLCVMAIPSSHPP 138
           D +P Q P P  ST P +SY      P+ ST  P +L D+A++L  H LCVMAIPS  PP
Sbjct: 163 DKNPIQHPIP--STRPSTSY-----IPSRSTATPISLRDMASILLQHGLCVMAIPSL-PP 222

Query: 139 PKIKKPTKATGKKTKL 155
           PK+KKP  A  K+ KL
Sbjct: 223 PKVKKPYTANSKRNKL 230

[Close]

BLAST of HG10009049 vs. ExPASy TrEMBL
Match: A0A0A0LW63 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G181550 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.6e-05
Identity = 47/122 (38.52%), Postives = 66/122 (54.10%), Query Frame = 0


Query: 53  PLDVTIFDDEPV----EDNLPLCTLPPLPPDISPRQGPSPDNSTSPLSSYPIHQAHPTSS 112
           P+  +I   +PV    +  LPL  LPP+  D++    P   +S    S +P +  + T+S
Sbjct: 24  PIYKSIVQTKPVHQSHQSQLPLAILPPISEDLT---HPIHTSSEHQQSLHP-NPNNQTAS 83

Query: 113 TNPPFNLNDLATLLSNHDLCVMAIPSSHPPPKIKKPTKATGKKTKLQRETQGLYSSINYD 171
           T P   L DLA+LL+ H LC  A P      K+ K    T K+ K+QRE Q L+SSI+YD
Sbjct: 84  TQPIIPLPDLASLLAQHGLCTWAFP-LFLLQKLLKDLSTTIKRNKMQRELQNLHSSIHYD 140

The following BLAST results are available for this feature:

BLAST of HG10009049 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK05133.1	4.1e-18	49.22	hypothetical protein E5676_scaffold1769G00370 [Cucumis melo var. makuwa]	[more]
KAA0050510.1	5.9e-09	43.20	hypothetical protein E6C27_scaffold175G001530 [Cucumis melo var. makuwa]	[more]
KAA0063298.1	1.2e-04	50.00	hypothetical protein E6C27_scaffold205G001210 [Cucumis melo var. makuwa]	[more]
TYK31477.1	4.4e-04	50.75	hypothetical protein E5676_scaffold455G007930 [Cucumis melo var. makuwa]	[more]
KAA0064805.1	9.8e-04	61.70	DNA-directed RNA polymerase I subunit 2 [Cucumis melo var. makuwa]	[more]

BLAST of HG10009049 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10009049 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BZG4	2.0e-18	49.22	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U5M3	2.9e-09	43.20	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0LHM7	5.4e-08	39.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G078070 PE=4 SV=1	[more]
A0A5A7V6T7	5.6e-05	50.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0LW63	5.6e-05	38.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G181550 PE=4 SV=1	[more]

BLAST of HG10009049 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 133..154
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10009049.1	HG10009049.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016740	transferase activity