HG10008999 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10008999
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Avr9/Cf-9 rapidly elicited protein
Location	Chr06: 1518543 .. 1518782 (-)
RNA-Seq Expression	HG10008999
Synteny	HG10008999

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTCCATGTTCAGTTTATTCGATGCCTTCGCCGCCGAATTGCTCCTCGGCAATTTCGTTAGGGCTTCTTCCTCTGTACCTTCCTTCACTCCCAACAATGGCGGCTCTGCCTCTTCCGCCGTGAAGCCACTGCCGATCAAGAAAGAAGAAACGAATTCCAAGAATTCGTCGATGAAGCCGAGATTTGCTCTGGAGTTAGATGGCCTCAATTGCTTTGAGACTCTCGTCCCGAATTGA

mRNA sequence

ATGAATTCCATGTTCAGTTTATTCGATGCCTTCGCCGCCGAATTGCTCCTCGGCAATTTCGTTAGGGCTTCTTCCTCTGTACCTTCCTTCACTCCCAACAATGGCGGCTCTGCCTCTTCCGCCGTGAAGCCACTGCCGATCAAGAAAGAAGAAACGAATTCCAAGAATTCGTCGATGAAGCCGAGATTTGCTCTGGAGTTAGATGGCCTCAATTGCTTTGAGACTCTCGTCCCGAATTGA

Coding sequence (CDS)

ATGAATTCCATGTTCAGTTTATTCGATGCCTTCGCCGCCGAATTGCTCCTCGGCAATTTCGTTAGGGCTTCTTCCTCTGTACCTTCCTTCACTCCCAACAATGGCGGCTCTGCCTCTTCCGCCGTGAAGCCACTGCCGATCAAGAAAGAAGAAACGAATTCCAAGAATTCGTCGATGAAGCCGAGATTTGCTCTGGAGTTAGATGGCCTCAATTGCTTTGAGACTCTCGTCCCGAATTGA

Protein sequence

MNSMFSLFDAFAAELLLGNFVRASSSVPSFTPNNGGSASSAVKPLPIKKEETNSKNSSMKPRFALELDGLNCFETLVPN

Homology

[Close]

BLAST of HG10008999 vs. NCBI nr
Match: XP_011654674.1 (uncharacterized protein LOC105435432 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 2.6e-25
Identity = 66/80 (82.50%), Postives = 69/80 (86.25%), Query Frame = 0


Query: 1  MNSMFSLFDAFAAELLLGNFVRASSSVPSFTPNNGGSASSAVKPLPIKK-EETNSKNSSM 60
          MNSMFSLFDAFAAE LLGNFVRASSSVPSFTPNN  ++ +  KPLP KK EE  SKNS M
Sbjct: 1  MNSMFSLFDAFAAEFLLGNFVRASSSVPSFTPNNNNASPAVPKPLPSKKEEEPKSKNSLM 60

Query: 61 KPRFALELDGLNCFETLVPN 80
          KPRFALELDGLNCFETLVPN
Sbjct: 61 KPRFALELDGLNCFETLVPN 80

[Close]

BLAST of HG10008999 vs. NCBI nr
Match: XP_023522684.1 (uncharacterized protein LOC111786686 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 117.9 bits (294), Expect = 4.1e-23
Identity = 67/86 (77.91%), Postives = 72/86 (83.72%), Query Frame = 0


Query: 1  MNSMFSLFDAFAAELLLGNFVRASSSVPSFTPN--NGGSASSA-VKPLPIKKEETN---- 60
          MNSMFS FDAFAAE+L+G FV AS+SVPSFTPN   GGSASSA VK +P KK+E N    
Sbjct: 1  MNSMFSFFDAFAAEILIGKFVTASTSVPSFTPNTGGGGSASSAPVKSMPGKKDEANAVAK 60

Query: 61 SKNSSMKPRFALELDGLNCFETLVPN 80
          SKNSSMKPRFALELDGLNCFETLVPN
Sbjct: 61 SKNSSMKPRFALELDGLNCFETLVPN 86

[Close]

BLAST of HG10008999 vs. NCBI nr
Match: KAG6579594.1 (hypothetical protein SDJN03_24042, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 117.5 bits (293), Expect = 5.3e-23
Identity = 68/86 (79.07%), Postives = 71/86 (82.56%), Query Frame = 0


Query: 1   MNSMFSLFDAFAAELLLGNFVRASSSVPSFTPN--NGGSASSA-VKPLPIKKEETN---- 60
           MNSMFS FDAFAAE+LLG FV AS+SVPSFTPN   GGSASSA VK +P KKEE N    
Sbjct: 81  MNSMFSFFDAFAAEILLGKFVTASTSVPSFTPNTGGGGSASSAPVKSMPGKKEEANAVAK 140

Query: 61  SKNSSMKPRFALELDGLNCFETLVPN 80
           SKNS MKPRFALELDGLNCFETLVPN
Sbjct: 141 SKNSLMKPRFALELDGLNCFETLVPN 166

[Close]

BLAST of HG10008999 vs. NCBI nr
Match: KAA0042638.1 (uncharacterized protein E6C27_scaffold44G001360 [Cucumis melo var. makuwa] >TYK06039.1 uncharacterized protein E5676_scaffold376G001400 [Cucumis melo var. makuwa])

HSP 1 Score: 117.5 bits (293), Expect = 5.3e-23
Identity = 69/84 (82.14%), Postives = 72/84 (85.71%), Query Frame = 0


Query: 1  MNSMFSLFDAFAAELLLG-NFVRASSSVPSFTP--NNGGSASSAV-KPLPI-KKEETNSK 60
          MNSMFSLFDAFAAE LLG NFVRASSS+PSFTP  NN  +ASSAV KPLP  KKEE   K
Sbjct: 1  MNSMFSLFDAFAAEFLLGNNFVRASSSIPSFTPNNNNNNAASSAVPKPLPSKKKEEPKPK 60

Query: 61 NSSMKPRFALELDGLNCFETLVPN 80
          NSS+KPRFALELDGLNCFETLVPN
Sbjct: 61 NSSVKPRFALELDGLNCFETLVPN 84

[Close]

BLAST of HG10008999 vs. NCBI nr
Match: XP_022929066.1 (uncharacterized protein LOC111435766 [Cucurbita moschata] >KAG7017054.1 hypothetical protein SDJN02_22166, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 117.5 bits (293), Expect = 5.3e-23
Identity = 68/86 (79.07%), Postives = 71/86 (82.56%), Query Frame = 0


Query: 1  MNSMFSLFDAFAAELLLGNFVRASSSVPSFTPN--NGGSASSA-VKPLPIKKEETN---- 60
          MNSMFS FDAFAAE+LLG FV AS+SVPSFTPN   GGSASSA VK +P KKEE N    
Sbjct: 1  MNSMFSFFDAFAAEILLGKFVTASTSVPSFTPNTGGGGSASSAPVKSMPGKKEEANAVAK 60

Query: 61 SKNSSMKPRFALELDGLNCFETLVPN 80
          SKNS MKPRFALELDGLNCFETLVPN
Sbjct: 61 SKNSLMKPRFALELDGLNCFETLVPN 86

[Close]

BLAST of HG10008999 vs. ExPASy TrEMBL
Match: A0A0A0KJT8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G146930 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.2e-25
Identity = 66/80 (82.50%), Postives = 69/80 (86.25%), Query Frame = 0


Query: 1  MNSMFSLFDAFAAELLLGNFVRASSSVPSFTPNNGGSASSAVKPLPIKK-EETNSKNSSM 60
          MNSMFSLFDAFAAE LLGNFVRASSSVPSFTPNN  ++ +  KPLP KK EE  SKNS M
Sbjct: 1  MNSMFSLFDAFAAEFLLGNFVRASSSVPSFTPNNNNASPAVPKPLPSKKEEEPKSKNSLM 60

Query: 61 KPRFALELDGLNCFETLVPN 80
          KPRFALELDGLNCFETLVPN
Sbjct: 61 KPRFALELDGLNCFETLVPN 80

[Close]

BLAST of HG10008999 vs. ExPASy TrEMBL
Match: A0A5D3C6N3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001400 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.6e-23
Identity = 69/84 (82.14%), Postives = 72/84 (85.71%), Query Frame = 0


Query: 1  MNSMFSLFDAFAAELLLG-NFVRASSSVPSFTP--NNGGSASSAV-KPLPI-KKEETNSK 60
          MNSMFSLFDAFAAE LLG NFVRASSS+PSFTP  NN  +ASSAV KPLP  KKEE   K
Sbjct: 1  MNSMFSLFDAFAAEFLLGNNFVRASSSIPSFTPNNNNNNAASSAVPKPLPSKKKEEPKPK 60

Query: 61 NSSMKPRFALELDGLNCFETLVPN 80
          NSS+KPRFALELDGLNCFETLVPN
Sbjct: 61 NSSVKPRFALELDGLNCFETLVPN 84

[Close]

BLAST of HG10008999 vs. ExPASy TrEMBL
Match: A0A6J1EM23 (uncharacterized protein LOC111435766 OS=Cucurbita moschata OX=3662 GN=LOC111435766 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.6e-23
Identity = 68/86 (79.07%), Postives = 71/86 (82.56%), Query Frame = 0


Query: 1  MNSMFSLFDAFAAELLLGNFVRASSSVPSFTPN--NGGSASSA-VKPLPIKKEETN---- 60
          MNSMFS FDAFAAE+LLG FV AS+SVPSFTPN   GGSASSA VK +P KKEE N    
Sbjct: 1  MNSMFSFFDAFAAEILLGKFVTASTSVPSFTPNTGGGGSASSAPVKSMPGKKEEANAVAK 60

Query: 61 SKNSSMKPRFALELDGLNCFETLVPN 80
          SKNS MKPRFALELDGLNCFETLVPN
Sbjct: 61 SKNSLMKPRFALELDGLNCFETLVPN 86

[Close]

BLAST of HG10008999 vs. ExPASy TrEMBL
Match: A0A6J1E0L6 (uncharacterized protein LOC111026066 OS=Momordica charantia OX=3673 GN=LOC111026066 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.1e-09
Identity = 44/82 (53.66%), Postives = 51/82 (62.20%), Query Frame = 0


Query: 1  MNSMFSLFDAFAAELLLGNFVRASSSVPSFTPNNGGSAS-----SAVKPLPIKKEETNSK 60
          MNSMFSLFDAFAAELL+    RASS   SF PNNG   S     S   P  +++ ++N  
Sbjct: 1  MNSMFSLFDAFAAELLMAKTFRASS---SFAPNNGSGGSVKSPPSNAAPDNLEQPKSNKN 60

Query: 61 NSSMKPRFALELDGLNCFETLV 78
          +    PR A E DGLNCFETLV
Sbjct: 61 SLLRPPRLAPEFDGLNCFETLV 79

[Close]

BLAST of HG10008999 vs. ExPASy TrEMBL
Match: A0A5C7H1W0 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_023293 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.3e-06
Identity = 42/84 (50.00%), Postives = 49/84 (58.33%), Query Frame = 0


Query: 1  MNSMFSLFDAFAAELLLGNFVRAS-------SSVPSFTPNNGGSASSAVKPLPIKKEETN 60
          MNS+FS FDAF+AE LLG  VR S       SS  +   NN  +  S      +   +  
Sbjct: 1  MNSIFSSFDAFSAE-LLGQKVRVSFAPTTTCSSTNATQKNNNNNLQSQESTKDVAINKKT 60

Query: 61 SKNSSMKPRFALELDGLNCFETLV 78
          S +SS KPRFA ELDGLNCFETLV
Sbjct: 61 STSSSSKPRFAPELDGLNCFETLV 83

[Close]

BLAST of HG10008999 vs. TAIR 10
Match: AT1G32928.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G32920.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 61.2 bits (147), Expect = 4.2e-10
Identity = 42/83 (50.60%), Postives = 52/83 (62.65%), Query Frame = 0


Query: 1  MNSMFSLFDAFAAELLLGNFVRASSSVPSFTPNNGGSASSA---VKPLPIKKEETNSKNS 60
          MNSMFS FDA  AE ++G  V A+S V     N+  S+SS       L +KK+E  SKN 
Sbjct: 1  MNSMFSAFDAMCAE-IMGKKVTAASYVYRSERNSASSSSSVGGQNASLSLKKDEKASKNM 60

Query: 61 SM---KPRFALELDGLNCFETLV 78
           +    PRFALELDGL+CFET+V
Sbjct: 61 DLPTKTPRFALELDGLHCFETIV 82

[Close]

BLAST of HG10008999 vs. TAIR 10
Match: AT1G32920.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to wounding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G32928.1); Has 42 Blast hits to 42 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 51.6 bits (122), Expect = 3.3e-07
Identity = 37/86 (43.02%), Postives = 49/86 (56.98%), Query Frame = 0


Query: 1  MNSMFSLFDAFAAELLLGNFVRASSSVPSFTPNNGGSASSAVKPLPIKKEETNSK-NSSM 60
          MNSMFS FDA  AE++  N + +     SFT     + ++  KP    + +T  K N+S 
Sbjct: 1  MNSMFSAFDALFAEVMGKNLMAS-----SFT-----ATTATTKPAAAPQTQTQEKANASS 60

Query: 61 K--------PRFALELDGLNCFETLV 78
          K        PRFALELDGL+CFET+V
Sbjct: 61 KKIGLVQKIPRFALELDGLHCFETIV 76

The following BLAST results are available for this feature:

BLAST of HG10008999 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011654674.1	2.6e-25	82.50	uncharacterized protein LOC105435432 [Cucumis sativus]	[more]
XP_023522684.1	4.1e-23	77.91	uncharacterized protein LOC111786686 [Cucurbita pepo subsp. pepo]	[more]
KAG6579594.1	5.3e-23	79.07	hypothetical protein SDJN03_24042, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0042638.1	5.3e-23	82.14	uncharacterized protein E6C27_scaffold44G001360 [Cucumis melo var. makuwa] >TYK0...	[more]
XP_022929066.1	5.3e-23	79.07	uncharacterized protein LOC111435766 [Cucurbita moschata] >KAG7017054.1 hypothet...	[more]

BLAST of HG10008999 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10008999 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJT8	1.2e-25	82.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G146930 PE=4 SV=1	[more]
A0A5D3C6N3	2.6e-23	82.14	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1EM23	2.6e-23	79.07	uncharacterized protein LOC111435766 OS=Cucurbita moschata OX=3662 GN=LOC1114357...	[more]
A0A6J1E0L6	2.1e-09	53.66	uncharacterized protein LOC111026066 OS=Momordica charantia OX=3673 GN=LOC111026...	[more]
A0A5C7H1W0	1.3e-06	50.00	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_023293 PE=4 SV=1	[more]

BLAST of HG10008999 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32928.1	4.2e-10	50.60	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G32920.1	3.3e-07	43.02	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..60
None	No IPR available	PANTHER	PTHR33641:SF2	BNAA08G06880D PROTEIN	coord: 1..79
None	No IPR available	PANTHER	PTHR33641	OS06G0133500 PROTEIN	coord: 1..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10008999.1	HG10008999.1	mRNA