HG10008989 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10008989
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	E3 ubiquitin-protein ligase MARCH2 isoform X1
Location	Chr06: 1436915 .. 1439226 (-)
RNA-Seq Expression	HG10008989
Synteny	HG10008989

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGATTGCCATTCGAATGATGTAAAGGTTAACACCAGCGCCAATCAGAACAATGACGACGACCTTGAGAAGCAGAGAGTTGCTCAGCCATCATCATCAGCATTAGACCTCTCTACCAGAGATGCTGATGATAATACACCATTGACGATTGTTGTTTCTACAGGGGAGTCTAAACCAATCTCTGAGATTCTTGGTCCTGGGACTCTTTGCTCTCAAGAGGAGTTATTGCCTTGTGCAGTTTCCCCAAAAAAGGAGCTCTTGTCCACCCCTTCTAGTGCTGATGAGCAGTGCAGGTACATTTGAATTGCTTCTCTTCCATGAAAAATGCTCTTCCAATTGTTCTGTTCATTTCTGCTTGTTCATTTTGCCATCACTTTCAAGTTAGTTCCTCCTTCCTCATGTTGTTGTTATTTATGTTGTTTATTTATTGCTTGTTAGCCATAAAACATTAGATAGACTCCCAAGTTTGCTTGTTGAAAATTGATACTTTCTGTGGTTTGTTAAATCACCAGTAAATCGATAAGGTTAAGCCATGAATCAAATATTTGGGGAAACTGCACAAGGCAATAACTCCTCTTGAGAGCAAAGAGTCCTAGTAGGATTACTTTTATCTGCATATAGTGGTCCTAGTAAGATTAGAACTGCAAACATGAGTATAGCTCAATGGTTAAGACATTTACTTCTCCCCTTGAGATTGGAAGTTCAAGTTTCCGCCGCACATTTGTCGCACTCAAGAATAAAGAGAAAAGATTAAAGCCCTATTTTTGTACACTGTAGATAACATTTTTTCAAATATTGTTCTTTCCATGTAATCTGCATTATAGTGGAGTATGTCCACAATTACCATTGGCTTCAAGTATCTGGTTAATTTGTTGTAAAGGAAGTTGAGGCCATTAAGCCTGAGTACTATTATTCAGAATTTGTCAGCAAGAGAAGGAGGAAGTCTTGATAGAACTTGGATGTCATTGTCGAGGCGGTCTCGCAAAAGCTCATCGGACTTGCATAGATACATGGTTTCGTACTAAAGGATCAAACAGATGTGAGATATGCCAGTAAGTTGCTTTTTGGAAGGATGACTTTCATTAATTTAATACAATCATACCGTTTTGGCCTTTCACGGGGGCATTTTGAAATGTAATTTTGCTAAGTTTTTCAGGGTTGTAGCGGCAAATGTATCACCTCCACAATCACATCATGGTGTAGGTACTCTGTAGCTCTTGGTGCAATGATTATGAACTTATAAAATGAAACACCACAGTGAATATTAAATCAATATTATTGTCCTGACTACGGTGTTAGTGTTATTAGTTAATGATCAATATCATGTTTTAGTTTTGCATTTGCTATAATATACCTTTCTTTCTTTTCCCACATTAGGCAAAAAATTATCATGACATTATAGGCAAGGACAACCCCGATCTTACTTGAATAGGATCTGTTCTATAGGTCATACAACTTAGTCCTTGAGTTCTAAAACTTATACGCAAGGACAACTAGTTCATCATTCACAATTCTTCCTTTCCTTGATGATTTAAAAATATTAAGAAAGAGGAGATGTGTAAAGTGGCAAAGAGTCACTCGCCTGCAAAACCGTATACGAACAAAACCAAGCTTATAAACTAAATACATGGGCACAAAAATTATTAAGCTTCTGTTTTGGTCGAGAAACAAGTTTTCTTTTTCTTCGTAGTGACATTACCTATCATTTCAAACTATTGATTCATGAGTATTGTAGTTTAAAACCGTATATTTTAGCATTGAACTTACGATCCTAATAGATAGATAACGTACCGAAATGACCTGAACTTTGATTATTCCTTATTTGACAAGCACAGACCAACTACTGGATTTGGAGGATTGATCCAACCTACAGAACTCAAGATCCCCAAAGGGTAGTAAGACTTTCACTTTTCCAATGATATGAGCGGTTGTTTCATTTATTGTCAAAAAAAACATGAAACCTTGTTCATAATTGTTTATGCAGCAGCACTGCTTCAGTCCACTTTGGCTGGCTTTTGCCATCCTCATAGGAGGTCTACTACTGGATATTCTTATATCCATCACCCTCGGTGTTTCCGCATTGCCCGTAAATATCATCATTGGTACGTTTTCATCGATCGAGCTATATCTCTAGTTACATGTCTAGCTTTTTATGGTTATTGAAACTTCGAGGAACAGGAGTTATTGTGGTGCTTGGACTTGGAACTGTGTTTCGACTTGCCTTGGAGTTCTTTCAAGAGTGGAATTCAACGAGAGGCTCGCAAAGAGTGGAATCAAATGTCACTATTGGGTACTTTCCAGCTATATAG

mRNA sequence

ATGGCGGATTGCCATTCGAATGATGTAAAGGTTAACACCAGCGCCAATCAGAACAATGACGACGACCTTGAGAAGCAGAGAGTTGCTCAGCCATCATCATCAGCATTAGACCTCTCTACCAGAGATGCTGATGATAATACACCATTGACGATTGTTGTTTCTACAGGGGAGTCTAAACCAATCTCTGAGATTCTTGGTCCTGGGACTCTTTGCTCTCAAGAGGAGTTATTGCCTTGTGCAGTTTCCCCAAAAAAGGAGCTCTTGTCCACCCCTTCTAGTGCTGATGAGCAGTGCAGAATTTGTCAGCAAGAGAAGGAGGAAGTCTTGATAGAACTTGGATGTCATTGTCGAGGCGGTCTCGCAAAAGCTCATCGGACTTGCATAGATACATGGTTTCGTACTAAAGGATCAAACAGATGTGAGATATGCCAGGTTGTAGCGGCAAATGTATCACCTCCACAATCACATCATGGTGTAGGAGGTCTACTACTGGATATTCTTATATCCATCACCCTCGGTGTTTCCGCATTGCCCGTAAATATCATCATTGGAGTTATTGTGGTGCTTGGACTTGGAACTGTGTTTCGACTTGCCTTGGAGTTCTTTCAAGAGTGGAATTCAACGAGAGGCTCGCAAAGAGTGGAATCAAATGTCACTATTGGGTACTTTCCAGCTATATAG

Coding sequence (CDS)

ATGGCGGATTGCCATTCGAATGATGTAAAGGTTAACACCAGCGCCAATCAGAACAATGACGACGACCTTGAGAAGCAGAGAGTTGCTCAGCCATCATCATCAGCATTAGACCTCTCTACCAGAGATGCTGATGATAATACACCATTGACGATTGTTGTTTCTACAGGGGAGTCTAAACCAATCTCTGAGATTCTTGGTCCTGGGACTCTTTGCTCTCAAGAGGAGTTATTGCCTTGTGCAGTTTCCCCAAAAAAGGAGCTCTTGTCCACCCCTTCTAGTGCTGATGAGCAGTGCAGAATTTGTCAGCAAGAGAAGGAGGAAGTCTTGATAGAACTTGGATGTCATTGTCGAGGCGGTCTCGCAAAAGCTCATCGGACTTGCATAGATACATGGTTTCGTACTAAAGGATCAAACAGATGTGAGATATGCCAGGTTGTAGCGGCAAATGTATCACCTCCACAATCACATCATGGTGTAGGAGGTCTACTACTGGATATTCTTATATCCATCACCCTCGGTGTTTCCGCATTGCCCGTAAATATCATCATTGGAGTTATTGTGGTGCTTGGACTTGGAACTGTGTTTCGACTTGCCTTGGAGTTCTTTCAAGAGTGGAATTCAACGAGAGGCTCGCAAAGAGTGGAATCAAATGTCACTATTGGGTACTTTCCAGCTATATAG

Protein sequence

MADCHSNDVKVNTSANQNNDDDLEKQRVAQPSSSALDLSTRDADDNTPLTIVVSTGESKPISEILGPGTLCSQEELLPCAVSPKKELLSTPSSADEQCRICQQEKEEVLIELGCHCRGGLAKAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHGVGGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQEWNSTRGSQRVESNVTIGYFPAI

Homology

[Close]

BLAST of HG10008989 vs. NCBI nr
Match: XP_038875309.1 (E3 ubiquitin-protein ligase MARCHF2 isoform X4 [Benincasa hispida])

HSP 1 Score: 397.5 bits (1020), Expect = 7.6e-107
Identity = 210/258 (81.40%), Postives = 216/258 (83.72%), Query Frame = 0


Query: 1   MADCHSNDVKVNTSANQNNDDDLEKQRVAQPSSSALDLSTRDADDNTPLTIVVSTGESKP 60
           M+DCHSNDVK NT ANQNND DLEKQRVAQPSSSAL+LSTRD DDNT LTIVVSTGESKP
Sbjct: 1   MSDCHSNDVKANTGANQNNDGDLEKQRVAQPSSSALELSTRDGDDNTLLTIVVSTGESKP 60

Query: 61  ISEILGPGTLCSQEELLPCAVSPKKELLSTPSSADEQCRICQQEKEEVLIELGCHCRGGL 120
           ISE+ G GTLCSQE LLPC VSPKKELLST SS+DEQCRICQQEKEEVLIELGC+CRGGL
Sbjct: 61  ISEVPGVGTLCSQEGLLPCEVSPKKELLSTTSSSDEQCRICQQEKEEVLIELGCNCRGGL 120

Query: 121 AKAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHG---------------------- 180
           AKAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHG                      
Sbjct: 121 AKAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHGTNYWIWRIDPTYRTQDPQRHCF 180

Query: 181 ----------VGGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQEWNST 227
                     +GGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQEWNST
Sbjct: 181 SPLWLAFAILIGGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQEWNST 240

[Close]

BLAST of HG10008989 vs. NCBI nr
Match: XP_038875308.1 (E3 ubiquitin-protein ligase MARCHF2 isoform X3 [Benincasa hispida])

HSP 1 Score: 397.1 bits (1019), Expect = 1.0e-106
Identity = 210/259 (81.08%), Postives = 216/259 (83.40%), Query Frame = 0


Query: 1   MADCHSNDVKVNTSANQNNDDDLEKQRVAQPSSSALDLSTRDADDNTPLTIVVSTGESKP 60
           M+DCHSNDVK NT ANQNND DLEKQRVAQPSSSAL+LSTRD DDNT LTIVVSTGESKP
Sbjct: 1   MSDCHSNDVKANTGANQNNDGDLEKQRVAQPSSSALELSTRDGDDNTLLTIVVSTGESKP 60

Query: 61  ISEILGPGTLCSQEELLPCAVSPKKELLSTPSSADEQCRICQQEKEEVLIELGCHCRGGL 120
           ISE+ G GTLCSQE LLPC VSPKKELLST SS+DEQCRICQQEKEEVLIELGC+CRGGL
Sbjct: 61  ISEVPGVGTLCSQEGLLPCEVSPKKELLSTTSSSDEQCRICQQEKEEVLIELGCNCRGGL 120

Query: 121 AKAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHG---------------------- 180
           AKAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHG                      
Sbjct: 121 AKAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHGTNYWIWRIDPTYRTQDPQRQHC 180

Query: 181 -----------VGGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQEWNS 227
                      +GGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQEWNS
Sbjct: 181 FSPLWLAFAILIGGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQEWNS 240

[Close]

BLAST of HG10008989 vs. NCBI nr
Match: XP_016903263.1 (PREDICTED: E3 ubiquitin-protein ligase MARCH9 isoform X4 [Cucumis melo])

HSP 1 Score: 382.1 bits (980), Expect = 3.3e-102
Identity = 202/238 (84.87%), Postives = 208/238 (87.39%), Query Frame = 0


Query: 3   DCHSNDVKVNTSANQNNDDDLEKQRVAQPSSSALDLSTRDADDNTPLTIVVSTGESKPIS 62
           DCHSNDVK N   NQ+N+ DLEKQRVAQPSSS L+LSTRD DDNTPLTIVVSTGESKP S
Sbjct: 6   DCHSNDVKANAGRNQSNEGDLEKQRVAQPSSS-LELSTRDGDDNTPLTIVVSTGESKPTS 65

Query: 63  EILGPGTLCSQEE-LLPCAVSPKKELLSTPSSADEQCRICQQEKEEVLIELGCHCRGGLA 122
           E+ GPGTLCSQEE  L CAVSPKKE  ST SS+DEQCRICQQEKEEVLIELGCHCRGGLA
Sbjct: 66  EVPGPGTLCSQEEGSLACAVSPKKEFSSTASSSDEQCRICQQEKEEVLIELGCHCRGGLA 125

Query: 123 KAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHG-------------VGGLLLDILI 182
           KAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHG             +GGLLLDILI
Sbjct: 126 KAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHGYCFSPLWLAFAILIGGLLLDILI 185

Query: 183 SITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQEWNSTRGSQRVESNVTIGYFPAI 227
           SITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQEWNS R SQRVESNVTIGYFPAI
Sbjct: 186 SITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQEWNSARVSQRVESNVTIGYFPAI 242

[Close]

BLAST of HG10008989 vs. NCBI nr
Match: XP_016903261.1 (PREDICTED: E3 ubiquitin-protein ligase MARCH9 isoform X3 [Cucumis melo])

HSP 1 Score: 381.7 bits (979), Expect = 4.3e-102
Identity = 202/239 (84.52%), Postives = 208/239 (87.03%), Query Frame = 0


Query: 3   DCHSNDVKVNTSANQNNDDDLEKQRVAQPSSSALDLSTRDADDNTPLTIVVSTGESKPIS 62
           DCHSNDVK N   NQ+N+ DLEKQRVAQPSSS L+LSTRD DDNTPLTIVVSTGESKP S
Sbjct: 6   DCHSNDVKANAGRNQSNEGDLEKQRVAQPSSS-LELSTRDGDDNTPLTIVVSTGESKPTS 65

Query: 63  EILGPGTLCSQEE-LLPCAVSPKKELLSTPSSADEQCRICQQEKEEVLIELGCHCRGGLA 122
           E+ GPGTLCSQEE  L CAVSPKKE  ST SS+DEQCRICQQEKEEVLIELGCHCRGGLA
Sbjct: 66  EVPGPGTLCSQEEGSLACAVSPKKEFSSTASSSDEQCRICQQEKEEVLIELGCHCRGGLA 125

Query: 123 KAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHG--------------VGGLLLDIL 182
           KAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHG              +GGLLLDIL
Sbjct: 126 KAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHGQYCFSPLWLAFAILIGGLLLDIL 185

Query: 183 ISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQEWNSTRGSQRVESNVTIGYFPAI 227
           ISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQEWNS R SQRVESNVTIGYFPAI
Sbjct: 186 ISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQEWNSARVSQRVESNVTIGYFPAI 243

[Close]

BLAST of HG10008989 vs. NCBI nr
Match: XP_004145881.1 (E3 ubiquitin-protein ligase MARCH2 [Cucumis sativus] >XP_031742128.1 E3 ubiquitin-protein ligase MARCH2 [Cucumis sativus] >KGN49961.1 hypothetical protein Csa_000267 [Cucumis sativus])

HSP 1 Score: 378.3 bits (970), Expect = 4.8e-101
Identity = 202/257 (78.60%), Postives = 210/257 (81.71%), Query Frame = 0


Query: 3   DCHSNDVKVNTSANQNNDDDLEKQRVAQPSSSALDLSTRDADDNTPLTIVVSTGESKPIS 62
           DCHSNDVK     NQ+N+ DLEKQRVAQPSSSAL+LSTRD DDNT LTIVVSTGESKP S
Sbjct: 6   DCHSNDVKAKAGGNQSNEGDLEKQRVAQPSSSALELSTRDGDDNTLLTIVVSTGESKPTS 65

Query: 63  EILGPGTLCSQEE-LLPCAVSPKKELLSTPSSADEQCRICQQEKEEVLIELGCHCRGGLA 122
           E+ GPGTL SQEE +L CAVSPKKELLST S +DEQCRICQQEKEEVLIELGCHCRGGLA
Sbjct: 66  EVPGPGTLRSQEEVILACAVSPKKELLSTTSGSDEQCRICQQEKEEVLIELGCHCRGGLA 125

Query: 123 KAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHG----------------------- 182
           KAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHG                       
Sbjct: 126 KAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHGTNYWIWRIDPTYRTQDPQRYCFS 185

Query: 183 ---------VGGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQEWNSTR 227
                    +GGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQEWNS+R
Sbjct: 186 PLWLAFAILIGGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQEWNSSR 245

[Close]

BLAST of HG10008989 vs. ExPASy TrEMBL
Match: A0A1S4E4V4 (E3 ubiquitin-protein ligase MARCH9 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103482880 PE=4 SV=1)

HSP 1 Score: 382.1 bits (980), Expect = 1.6e-102
Identity = 202/238 (84.87%), Postives = 208/238 (87.39%), Query Frame = 0


Query: 3   DCHSNDVKVNTSANQNNDDDLEKQRVAQPSSSALDLSTRDADDNTPLTIVVSTGESKPIS 62
           DCHSNDVK N   NQ+N+ DLEKQRVAQPSSS L+LSTRD DDNTPLTIVVSTGESKP S
Sbjct: 6   DCHSNDVKANAGRNQSNEGDLEKQRVAQPSSS-LELSTRDGDDNTPLTIVVSTGESKPTS 65

Query: 63  EILGPGTLCSQEE-LLPCAVSPKKELLSTPSSADEQCRICQQEKEEVLIELGCHCRGGLA 122
           E+ GPGTLCSQEE  L CAVSPKKE  ST SS+DEQCRICQQEKEEVLIELGCHCRGGLA
Sbjct: 66  EVPGPGTLCSQEEGSLACAVSPKKEFSSTASSSDEQCRICQQEKEEVLIELGCHCRGGLA 125

Query: 123 KAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHG-------------VGGLLLDILI 182
           KAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHG             +GGLLLDILI
Sbjct: 126 KAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHGYCFSPLWLAFAILIGGLLLDILI 185

Query: 183 SITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQEWNSTRGSQRVESNVTIGYFPAI 227
           SITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQEWNS R SQRVESNVTIGYFPAI
Sbjct: 186 SITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQEWNSARVSQRVESNVTIGYFPAI 242

[Close]

BLAST of HG10008989 vs. ExPASy TrEMBL
Match: A0A1S4E4V2 (E3 ubiquitin-protein ligase MARCH9 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103482880 PE=4 SV=1)

HSP 1 Score: 381.7 bits (979), Expect = 2.1e-102
Identity = 202/239 (84.52%), Postives = 208/239 (87.03%), Query Frame = 0


Query: 3   DCHSNDVKVNTSANQNNDDDLEKQRVAQPSSSALDLSTRDADDNTPLTIVVSTGESKPIS 62
           DCHSNDVK N   NQ+N+ DLEKQRVAQPSSS L+LSTRD DDNTPLTIVVSTGESKP S
Sbjct: 6   DCHSNDVKANAGRNQSNEGDLEKQRVAQPSSS-LELSTRDGDDNTPLTIVVSTGESKPTS 65

Query: 63  EILGPGTLCSQEE-LLPCAVSPKKELLSTPSSADEQCRICQQEKEEVLIELGCHCRGGLA 122
           E+ GPGTLCSQEE  L CAVSPKKE  ST SS+DEQCRICQQEKEEVLIELGCHCRGGLA
Sbjct: 66  EVPGPGTLCSQEEGSLACAVSPKKEFSSTASSSDEQCRICQQEKEEVLIELGCHCRGGLA 125

Query: 123 KAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHG--------------VGGLLLDIL 182
           KAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHG              +GGLLLDIL
Sbjct: 126 KAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHGQYCFSPLWLAFAILIGGLLLDIL 185

Query: 183 ISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQEWNSTRGSQRVESNVTIGYFPAI 227
           ISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQEWNS R SQRVESNVTIGYFPAI
Sbjct: 186 ISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQEWNSARVSQRVESNVTIGYFPAI 243

[Close]

BLAST of HG10008989 vs. ExPASy TrEMBL
Match: A0A0A0KQJ1 (RING-CH-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G146840 PE=4 SV=1)

HSP 1 Score: 378.3 bits (970), Expect = 2.3e-101
Identity = 202/257 (78.60%), Postives = 210/257 (81.71%), Query Frame = 0


Query: 3   DCHSNDVKVNTSANQNNDDDLEKQRVAQPSSSALDLSTRDADDNTPLTIVVSTGESKPIS 62
           DCHSNDVK     NQ+N+ DLEKQRVAQPSSSAL+LSTRD DDNT LTIVVSTGESKP S
Sbjct: 6   DCHSNDVKAKAGGNQSNEGDLEKQRVAQPSSSALELSTRDGDDNTLLTIVVSTGESKPTS 65

Query: 63  EILGPGTLCSQEE-LLPCAVSPKKELLSTPSSADEQCRICQQEKEEVLIELGCHCRGGLA 122
           E+ GPGTL SQEE +L CAVSPKKELLST S +DEQCRICQQEKEEVLIELGCHCRGGLA
Sbjct: 66  EVPGPGTLRSQEEVILACAVSPKKELLSTTSGSDEQCRICQQEKEEVLIELGCHCRGGLA 125

Query: 123 KAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHG----------------------- 182
           KAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHG                       
Sbjct: 126 KAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHGTNYWIWRIDPTYRTQDPQRYCFS 185

Query: 183 ---------VGGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQEWNSTR 227
                    +GGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQEWNS+R
Sbjct: 186 PLWLAFAILIGGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQEWNSSR 245

[Close]

BLAST of HG10008989 vs. ExPASy TrEMBL
Match: A0A5A7TM25 (E3 ubiquitin-protein ligase MARCH2 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001330 PE=4 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 2.6e-100
Identity = 202/258 (78.29%), Postives = 208/258 (80.62%), Query Frame = 0


Query: 3   DCHSNDVKVNTSANQNNDDDLEKQRVAQPSSSALDLSTRDADDNTPLTIVVSTGESKPIS 62
           DCHSNDVK N   NQ+N+ DLEKQRVAQPSSS L+LSTRD DDNTPLTIVVSTGESKP S
Sbjct: 6   DCHSNDVKANAGRNQSNEGDLEKQRVAQPSSS-LELSTRDGDDNTPLTIVVSTGESKPTS 65

Query: 63  EILGPGTLCSQEE-LLPCAVSPKKELLSTPSSADEQCRICQQEKEEVLIELGCHCRGGLA 122
           E+ GPGTLCSQEE  L CAVSPKKE  ST SS+DEQCRICQQEKEEVLIELGCHCRGGLA
Sbjct: 66  EVPGPGTLCSQEEGSLACAVSPKKEFSSTASSSDEQCRICQQEKEEVLIELGCHCRGGLA 125

Query: 123 KAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHG----------------------- 182
           KAHRTCIDTWFRT GSNRCEICQVVAANVSPPQSHHG                       
Sbjct: 126 KAHRTCIDTWFRTIGSNRCEICQVVAANVSPPQSHHGTNYWIWRIDPTYRTQDPQRQYCF 185

Query: 183 ----------VGGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQEWNST 227
                     +GGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQEWNS 
Sbjct: 186 SPLWLAFAILIGGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQEWNSA 245

[Close]

BLAST of HG10008989 vs. ExPASy TrEMBL
Match: A0A1S3AU35 (E3 ubiquitin-protein ligase MARCH2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103482880 PE=4 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 2.6e-100
Identity = 202/257 (78.60%), Postives = 208/257 (80.93%), Query Frame = 0


Query: 3   DCHSNDVKVNTSANQNNDDDLEKQRVAQPSSSALDLSTRDADDNTPLTIVVSTGESKPIS 62
           DCHSNDVK N   NQ+N+ DLEKQRVAQPSSS L+LSTRD DDNTPLTIVVSTGESKP S
Sbjct: 6   DCHSNDVKANAGRNQSNEGDLEKQRVAQPSSS-LELSTRDGDDNTPLTIVVSTGESKPTS 65

Query: 63  EILGPGTLCSQEE-LLPCAVSPKKELLSTPSSADEQCRICQQEKEEVLIELGCHCRGGLA 122
           E+ GPGTLCSQEE  L CAVSPKKE  ST SS+DEQCRICQQEKEEVLIELGCHCRGGLA
Sbjct: 66  EVPGPGTLCSQEEGSLACAVSPKKEFSSTASSSDEQCRICQQEKEEVLIELGCHCRGGLA 125

Query: 123 KAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHG----------------------- 182
           KAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHG                       
Sbjct: 126 KAHRTCIDTWFRTKGSNRCEICQVVAANVSPPQSHHGTNYWIWRIDPTYRTQDPQRYCFS 185

Query: 183 ---------VGGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQEWNSTR 227
                    +GGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQEWNS R
Sbjct: 186 PLWLAFAILIGGLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQEWNSAR 245

[Close]

BLAST of HG10008989 vs. TAIR 10
Match: AT2G45530.1 (RING/U-box superfamily protein )

HSP 1 Score: 198.0 bits (502), Expect = 8.3e-51
Identity = 123/252 (48.81%), Postives = 152/252 (60.32%), Query Frame = 0


Query: 14  SANQNNDDDLEKQRVAQPSSSALDLSTRDADDNTPLTIVVSTGESKPISEILGPGTLCSQ 73
           S++ +  DDLEKQ+  Q    +    +  A+++  LTIVV  G+S             S+
Sbjct: 3   SSSSSGGDDLEKQQQQQQKDKSPQKQSESANESNHLTIVVCNGDS-------------SR 62

Query: 74  EELLPCAVSPKKEL-LSTPSSADEQCRICQQEKEEVLIELGCHCRGGLAKAHRTCIDTWF 133
           EEL+   + P+KE+ LS   S+ EQCR+C Q+KEEVLIELGC CRGGLAKAHR+CID WF
Sbjct: 63  EELVG-QIPPEKEVSLSRNGSSHEQCRVCLQDKEEVLIELGCQCRGGLAKAHRSCIDAWF 122

Query: 134 RTKGSNRCEICQVVAANVSPPQSHHG--------------------------------VG 193
           RTKGSN+CEICQVVA NV+PP++                                   +G
Sbjct: 123 RTKGSNQCEICQVVAVNVTPPETQPTTNYWVWRIDPSYRQEERERGCFSPLWVAFSILIG 182

Query: 194 GLLLDILISITLGVSALPVNIIIGVIVVLGLGTVFRLALEFFQEWNST----RGSQRVES 227
           GL+LD+LISITLGVSALPVNIIIGVIVVLGLGT  RL LEF  EW+      R  QR E+
Sbjct: 183 GLMLDVLISITLGVSALPVNIIIGVIVVLGLGTALRLTLEFCYEWSLRRAVHRAVQRAEA 240

[Close]

BLAST of HG10008989 vs. TAIR 10
Match: AT2G37950.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 66.2 bits (160), Expect = 3.8e-11
Identity = 31/59 (52.54%), Postives = 36/59 (61.02%), Query Frame = 0


Query: 95  DEQCRICQQEKEEV---LIELGCHCRGGLAKAHRTCIDTWFRTKGSNRCEICQVVAANV 151
           ++ CRIC    E      IELGC C+  LA AHR C +TWF+ KG   CEICQ VA NV
Sbjct: 81  EKDCRICHLGVETSGGGAIELGCSCKDDLAVAHRQCAETWFKIKGDKTCEICQSVARNV 139

[Close]

BLAST of HG10008989 vs. TAIR 10
Match: AT5G05830.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 64.3 bits (155), Expect = 1.4e-10
Identity = 28/65 (43.08%), Postives = 38/65 (58.46%), Query Frame = 0


Query: 92  SSADEQCRICQQE------KEEVLIELGCHCRGGLAKAHRTCIDTWFRTKGSNRCEICQV 151
           S ++  CRIC         +  V IELGC C+  LA AH+ C +TWF+ KG+  CE+C  
Sbjct: 73  SQSERDCRICHMSLDAANLESGVPIELGCSCKADLAAAHKHCAETWFKIKGNKICEVCGS 132

[Close]

BLAST of HG10008989 vs. TAIR 10
Match: AT5G59000.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-09
Identity = 28/67 (41.79%), Postives = 42/67 (62.69%), Query Frame = 0


Query: 95  DEQCRICQQEKEE-----VLIELGCHCRGGLAKAHRTCIDTWFRTKGSNRCEICQVVAAN 154
           DE+    ++E+EE     + ++LGC C+G L  AH  C +TWF+ KG+  CEIC  +A N
Sbjct: 110 DEEDEEEEEEEEEEEYYGLPLQLGCSCKGDLGVAHSKCAETWFKIKGNMTCEICGAMALN 169

Query: 155 VSPPQSH 157
           V+  QS+
Sbjct: 170 VAGEQSN 176

[Close]

BLAST of HG10008989 vs. TAIR 10
Match: AT5G01070.2 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 58.2 bits (139), Expect = 1.0e-08
Identity = 27/67 (40.30%), Postives = 35/67 (52.24%), Query Frame = 0


Query: 89  STPSSADEQCRICQQEKEEVLIE------LGCHCRGGLAKAHRTCIDTWFRTKGSNRCEI 148
           S   S ++ CRIC    E    E      LGC C+  L   H+ C DTWF+ KG+  CEI
Sbjct: 69  SIRGSPEKDCRICHLGLESSRHECGDPMVLGCSCKDDLGYVHKQCADTWFKIKGNKTCEI 128

Query: 149 CQVVAAN 150
           C+ +A N
Sbjct: 129 CRSIAQN 135

The following BLAST results are available for this feature:

BLAST of HG10008989 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875309.1	7.6e-107	81.40	E3 ubiquitin-protein ligase MARCHF2 isoform X4 [Benincasa hispida]	[more]
XP_038875308.1	1.0e-106	81.08	E3 ubiquitin-protein ligase MARCHF2 isoform X3 [Benincasa hispida]	[more]
XP_016903263.1	3.3e-102	84.87	PREDICTED: E3 ubiquitin-protein ligase MARCH9 isoform X4 [Cucumis melo]	[more]
XP_016903261.1	4.3e-102	84.52	PREDICTED: E3 ubiquitin-protein ligase MARCH9 isoform X3 [Cucumis melo]	[more]
XP_004145881.1	4.8e-101	78.60	E3 ubiquitin-protein ligase MARCH2 [Cucumis sativus] >XP_031742128.1 E3 ubiquiti...	[more]

BLAST of HG10008989 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10008989 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E4V4	1.6e-102	84.87	E3 ubiquitin-protein ligase MARCH9 isoform X4 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A1S4E4V2	2.1e-102	84.52	E3 ubiquitin-protein ligase MARCH9 isoform X3 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A0A0KQJ1	2.3e-101	78.60	RING-CH-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G14684...	[more]
A0A5A7TM25	2.6e-100	78.29	E3 ubiquitin-protein ligase MARCH2 isoform X1 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3AU35	2.6e-100	78.60	E3 ubiquitin-protein ligase MARCH2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]

BLAST of HG10008989 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G45530.1	8.3e-51	48.81	RING/U-box superfamily protein	[more]
AT2G37950.1	3.8e-11	52.54	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G05830.1	1.4e-10	43.08	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G59000.1	1.2e-09	41.79	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G01070.2	1.0e-08	40.30	RING/FYVE/PHD zinc finger superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011016	Zinc finger, RING-CH-type	SMART	SM00744	ringv_2	coord: 97..144 e-value: 3.9E-15 score: 66.3
IPR011016	Zinc finger, RING-CH-type	PFAM	PF12906	RINGv	coord: 98..143 e-value: 6.4E-11 score: 42.2
IPR011016	Zinc finger, RING-CH-type	PROSITE	PS51292	ZF_RING_CH	coord: 90..150 score: 18.778008
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 83..152 e-value: 1.3E-14 score: 55.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43
None	No IPR available	PANTHER	PTHR46214:SF16	E3 UBIQUITIN-PROTEIN LIGASE MARCH11 ISOFORM X1	coord: 159..225
None	No IPR available	PANTHER	PTHR46214	ZINC FINGER, RING-CH-TYPE	coord: 18..157
None	No IPR available	PANTHER	PTHR46214:SF16	E3 UBIQUITIN-PROTEIN LIGASE MARCH11 ISOFORM X1	coord: 18..157
None	No IPR available	PANTHER	PTHR46214	ZINC FINGER, RING-CH-TYPE	coord: 159..225
None	No IPR available	CDD	cd16495	RING_CH-C4HC3_MARCH	coord: 98..144 e-value: 1.79303E-13 score: 60.804
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 93..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10008989.1	HG10008989.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008270	zinc ion binding