HG10008987 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10008987
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionGlycine--tRNA ligase beta subunit
LocationChr06: 1422086 .. 1422250 (+)
RNA-Seq ExpressionHG10008987
SyntenyHG10008987
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGCTAGTATCGGTACTGGCGGAGATTCTAGAGGAGTATACGGCGGTGCTCGCGGAGGTGCTCCGGCAGCTCTTTCATTCTGCCCCATTTCCTCGCCGTGTCCGGTTTCTCATCCTTCATAATCTCCCTTTCGCCAATCGCCCCAGCGGCGTAGCGGCGTAG

mRNA sequence

ATGATGCTAGTATCGGTACTGGCGGAGATTCTAGAGGAGTATACGGCGGTGCTCGCGGAGGTGCTCCGGCAGCTCTTTCATTCTGCCCCATTTCCTCGCCGTGTCCGGTTTCTCATCCTTCATAATCTCCCTTTCGCCAATCGCCCCAGCGGCGTAGCGGCGTAG

Coding sequence (CDS)

ATGATGCTAGTATCGGTACTGGCGGAGATTCTAGAGGAGTATACGGCGGTGCTCGCGGAGGTGCTCCGGCAGCTCTTTCATTCTGCCCCATTTCCTCGCCGTGTCCGGTTTCTCATCCTTCATAATCTCCCTTTCGCCAATCGCCCCAGCGGCGTAGCGGCGTAG

Protein sequence

MMLVSVLAEILEEYTAVLAEVLRQLFHSAPFPRRVRFLILHNLPFANRPSGVAA
Homology
BLAST of HG10008987 vs. NCBI nr
Match: XP_038907007.1 (uncharacterized protein LOC120092849 [Benincasa hispida])

HSP 1 Score: 97.1 bits (240), Expect = 5.1e-17
Identity = 49/54 (90.74%), Postives = 51/54 (94.44%), Query Frame = 0

Query: 1  MMLVSVLAEILEEYTAVLAEVLRQLFHSAPFPRRVRFLILHNLPFANRPSGVAA 55
          MMLVSVLAEILEEYTAVL EVLRQLFHSAPFPRR+RFLILHNLPF +RPSGV A
Sbjct: 1  MMLVSVLAEILEEYTAVLVEVLRQLFHSAPFPRRIRFLILHNLPFVDRPSGVTA 54

BLAST of HG10008987 vs. NCBI nr
Match: XP_008437471.1 (PREDICTED: uncharacterized protein LOC103482883 [Cucumis melo])

HSP 1 Score: 90.1 bits (222), Expect = 6.2e-15
Identity = 45/54 (83.33%), Postives = 52/54 (96.30%), Query Frame = 0

Query: 1  MMLVSVLAEILEEYTAVLAEVLRQLFHSAPFPRRVRFLILHNLPFANRPSGVAA 55
          MMLVSVLAEILEEYT VL++VLRQLF+SAPFPRRVRFLILHNLPFA+RP+ ++A
Sbjct: 1  MMLVSVLAEILEEYTVVLSDVLRQLFYSAPFPRRVRFLILHNLPFADRPTALSA 54

BLAST of HG10008987 vs. NCBI nr
Match: XP_011654666.1 (uncharacterized protein LOC105435431 [Cucumis sativus] >KGN49959.1 hypothetical protein Csa_000696 [Cucumis sativus])

HSP 1 Score: 89.4 bits (220), Expect = 1.1e-14
Identity = 45/54 (83.33%), Postives = 51/54 (94.44%), Query Frame = 0

Query: 1  MMLVSVLAEILEEYTAVLAEVLRQLFHSAPFPRRVRFLILHNLPFANRPSGVAA 55
          MMLVSVLAEILEEYT VL++VLRQLF+SAPFP RVRFLILHNLPFA+RP+ +AA
Sbjct: 1  MMLVSVLAEILEEYTVVLSDVLRQLFYSAPFPHRVRFLILHNLPFADRPTALAA 54

BLAST of HG10008987 vs. NCBI nr
Match: XP_022970120.1 (uncharacterized protein LOC111469109 [Cucurbita maxima])

HSP 1 Score: 87.4 bits (215), Expect = 4.0e-14
Identity = 45/50 (90.00%), Postives = 46/50 (92.00%), Query Frame = 0

Query: 1  MMLVSVLAEILEEYTAVLAEVLRQLFHSAPFPRRVRFLILHNLPFANRPS 51
          MMLVSVLAEILEEYT +L EVLRQLFHSAPFPRRVRFLILHNLPFAN  S
Sbjct: 1  MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANNSS 50

BLAST of HG10008987 vs. NCBI nr
Match: KAG7017064.1 (hypothetical protein SDJN02_22176, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 87.4 bits (215), Expect = 4.0e-14
Identity = 45/50 (90.00%), Postives = 46/50 (92.00%), Query Frame = 0

Query: 1  MMLVSVLAEILEEYTAVLAEVLRQLFHSAPFPRRVRFLILHNLPFANRPS 51
          MMLVSVLAEILEEYT +L EVLRQLFHSAPFPRRVRFLILHNLPFAN  S
Sbjct: 1  MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANNSS 50

BLAST of HG10008987 vs. ExPASy TrEMBL
Match: A0A1S3AUP0 (uncharacterized protein LOC103482883 OS=Cucumis melo OX=3656 GN=LOC103482883 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.0e-15
Identity = 45/54 (83.33%), Postives = 52/54 (96.30%), Query Frame = 0

Query: 1  MMLVSVLAEILEEYTAVLAEVLRQLFHSAPFPRRVRFLILHNLPFANRPSGVAA 55
          MMLVSVLAEILEEYT VL++VLRQLF+SAPFPRRVRFLILHNLPFA+RP+ ++A
Sbjct: 1  MMLVSVLAEILEEYTVVLSDVLRQLFYSAPFPRRVRFLILHNLPFADRPTALSA 54

BLAST of HG10008987 vs. ExPASy TrEMBL
Match: A0A0A0KM75 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G146820 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.1e-15
Identity = 45/54 (83.33%), Postives = 51/54 (94.44%), Query Frame = 0

Query: 1  MMLVSVLAEILEEYTAVLAEVLRQLFHSAPFPRRVRFLILHNLPFANRPSGVAA 55
          MMLVSVLAEILEEYT VL++VLRQLF+SAPFP RVRFLILHNLPFA+RP+ +AA
Sbjct: 1  MMLVSVLAEILEEYTVVLSDVLRQLFYSAPFPHRVRFLILHNLPFADRPTALAA 54

BLAST of HG10008987 vs. ExPASy TrEMBL
Match: A0A6J1I1Z0 (uncharacterized protein LOC111469109 OS=Cucurbita maxima OX=3661 GN=LOC111469109 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.0e-14
Identity = 45/50 (90.00%), Postives = 46/50 (92.00%), Query Frame = 0

Query: 1  MMLVSVLAEILEEYTAVLAEVLRQLFHSAPFPRRVRFLILHNLPFANRPS 51
          MMLVSVLAEILEEYT +L EVLRQLFHSAPFPRRVRFLILHNLPFAN  S
Sbjct: 1  MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANNSS 50

BLAST of HG10008987 vs. ExPASy TrEMBL
Match: A0A6J1EQP1 (uncharacterized protein LOC111435715 OS=Cucurbita moschata OX=3662 GN=LOC111435715 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.0e-14
Identity = 45/50 (90.00%), Postives = 46/50 (92.00%), Query Frame = 0

Query: 1  MMLVSVLAEILEEYTAVLAEVLRQLFHSAPFPRRVRFLILHNLPFANRPS 51
          MMLVSVLAEILEEYT +L EVLRQLFHSAPFPRRVRFLILHNLPFAN  S
Sbjct: 1  MMLVSVLAEILEEYTVLLTEVLRQLFHSAPFPRRVRFLILHNLPFANNSS 50

BLAST of HG10008987 vs. ExPASy TrEMBL
Match: A0A6J1DZC9 (uncharacterized protein LOC111025999 OS=Momordica charantia OX=3673 GN=LOC111025999 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.1e-12
Identity = 41/53 (77.36%), Postives = 46/53 (86.79%), Query Frame = 0

Query: 1  MMLVSVLAEILEEYTAVLAEVLRQLFHSAPFPRRVRFLILHNLPFANRPSGVA 54
          MMLVSV+AE+LEEYT +LAEVLRQLF+SAPFPRRVRFLILHNLP  N  +  A
Sbjct: 1  MMLVSVVAELLEEYTVLLAEVLRQLFNSAPFPRRVRFLILHNLPSGNNSNSSA 53

BLAST of HG10008987 vs. TAIR 10
Match: AT1G33055.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anaerobic respiration; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; Has 20 Blast hits to 20 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 54.7 bits (130), Expect = 2.7e-08
Identity = 26/45 (57.78%), Postives = 37/45 (82.22%), Query Frame = 0

Query: 1  MMLVSVLAEILEEYTAVLAEVLRQLFHSAPFPRRVRFLILHNLPF 46
          M+LV+++AE+++EYT VLA V+  LF  APFPRR+R  IL++LPF
Sbjct: 1  MLLVTLIAEMMKEYTVVLAGVVEHLFSQAPFPRRIRLHILYSLPF 45

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038907007.15.1e-1790.74uncharacterized protein LOC120092849 [Benincasa hispida][more]
XP_008437471.16.2e-1583.33PREDICTED: uncharacterized protein LOC103482883 [Cucumis melo][more]
XP_011654666.11.1e-1483.33uncharacterized protein LOC105435431 [Cucumis sativus] >KGN49959.1 hypothetical ... [more]
XP_022970120.14.0e-1490.00uncharacterized protein LOC111469109 [Cucurbita maxima][more]
KAG7017064.14.0e-1490.00hypothetical protein SDJN02_22176, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3AUP03.0e-1583.33uncharacterized protein LOC103482883 OS=Cucumis melo OX=3656 GN=LOC103482883 PE=... [more]
A0A0A0KM755.1e-1583.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G146820 PE=4 SV=1[more]
A0A6J1I1Z02.0e-1490.00uncharacterized protein LOC111469109 OS=Cucurbita maxima OX=3661 GN=LOC111469109... [more]
A0A6J1EQP12.0e-1490.00uncharacterized protein LOC111435715 OS=Cucurbita moschata OX=3662 GN=LOC1114357... [more]
A0A6J1DZC94.1e-1277.36uncharacterized protein LOC111025999 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
Match NameE-valueIdentityDescription
AT1G33055.12.7e-0857.78unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anaerobi... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR48175OS04G0581700 PROTEINcoord: 1..50

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10008987.1HG10008987.1mRNA