HG10008980 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10008980
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	RING-type E3 ubiquitin transferase
Location	Chr06: 1331615 .. 1332163 (-)
RNA-Seq Expression	HG10008980
Synteny	HG10008980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGCCAACTCCTTTAGACGCCGACGACACCATCCGGTTCCAACCACCGCCATCGCCTCCGTGCCACGACCTCCGCGCCTGTACTTGGCGGCCGTACTCCAATTCCAGAGACTTTGAAGCCAACGCCGCCGTCGTCGTCATCATCCTCCTCTGTGGCCTCATCTGCGCTCTCGCTCTCAACACCGCCATCCGCTGCTTCCTCCGTCGTCGCGGCAGTGCCGATGATGATCCAAGTGATAGCCGGCAGGAGGAACTCCAGGACGAGACGAAGCCGACGCTAGTGGACAAATTGAAGATGGCTCCAGCGTTGGTGTTCTCGGCGGATATGAAGCCGAAACTCGCCGGTGCTGAGGCAGAGTGTACGATTTGCTTGACAGAGTTCTCGGAAGGGGAAGAGATTCGAGTATTGGCGATTTGTAAGCACGGATTTCATGTTCAGTGTATTCAAACGTGGTTGATTTTGCATTCTTCTTGTCCGACTTGCCGCCGTAGCTACCTCCCTCCCTCGCCGTCATCCTCTGTAAGCGGCGGCGACGGCGACCCCTGA

mRNA sequence

ATGCGGCCAACTCCTTTAGACGCCGACGACACCATCCGGTTCCAACCACCGCCATCGCCTCCGTGCCACGACCTCCGCGCCTGTACTTGGCGGCCGTACTCCAATTCCAGAGACTTTGAAGCCAACGCCGCCGTCGTCGTCATCATCCTCCTCTGTGGCCTCATCTGCGCTCTCGCTCTCAACACCGCCATCCGCTGCTTCCTCCGTCGTCGCGGCAGTGCCGATGATGATCCAAGTGATAGCCGGCAGGAGGAACTCCAGGACGAGACGAAGCCGACGCTAGTGGACAAATTGAAGATGGCTCCAGCGTTGGTGTTCTCGGCGGATATGAAGCCGAAACTCGCCGGTGCTGAGGCAGAGTGTACGATTTGCTTGACAGAGTTCTCGGAAGGGGAAGAGATTCGAGTATTGGCGATTTGTAAGCACGGATTTCATGTTCAGTGTATTCAAACGTGGTTGATTTTGCATTCTTCTTGTCCGACTTGCCGCCGTAGCTACCTCCCTCCCTCGCCGTCATCCTCTGTAAGCGGCGGCGACGGCGACCCCTGA

Coding sequence (CDS)

ATGCGGCCAACTCCTTTAGACGCCGACGACACCATCCGGTTCCAACCACCGCCATCGCCTCCGTGCCACGACCTCCGCGCCTGTACTTGGCGGCCGTACTCCAATTCCAGAGACTTTGAAGCCAACGCCGCCGTCGTCGTCATCATCCTCCTCTGTGGCCTCATCTGCGCTCTCGCTCTCAACACCGCCATCCGCTGCTTCCTCCGTCGTCGCGGCAGTGCCGATGATGATCCAAGTGATAGCCGGCAGGAGGAACTCCAGGACGAGACGAAGCCGACGCTAGTGGACAAATTGAAGATGGCTCCAGCGTTGGTGTTCTCGGCGGATATGAAGCCGAAACTCGCCGGTGCTGAGGCAGAGTGTACGATTTGCTTGACAGAGTTCTCGGAAGGGGAAGAGATTCGAGTATTGGCGATTTGTAAGCACGGATTTCATGTTCAGTGTATTCAAACGTGGTTGATTTTGCATTCTTCTTGTCCGACTTGCCGCCGTAGCTACCTCCCTCCCTCGCCGTCATCCTCTGTAAGCGGCGGCGACGGCGACCCCTGA

Protein sequence

MRPTPLDADDTIRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALALNTAIRCFLRRRGSADDDPSDSRQEELQDETKPTLVDKLKMAPALVFSADMKPKLAGAEAECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSSVSGGDGDP

Homology

[Close]

BLAST of HG10008980 vs. NCBI nr
Match: XP_038875287.1 (RING-H2 finger protein ATL79-like [Benincasa hispida])

HSP 1 Score: 360.9 bits (925), Expect = 6.4e-96
Identity = 175/181 (96.69%), Postives = 177/181 (97.79%), Query Frame = 0


Query: 1   MRPTPLDADDTIRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60
           MRPTPLDADDT+ FQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL
Sbjct: 1   MRPTPLDADDTVAFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60

Query: 61  NTAIRCFLRRRGSADDDPSDSRQEELQDETKPTLVDKLKMAPALVFSADMKPKLAGAEAE 120
           NTAIRCFLRRRGSADDDPSDSRQEELQDETKPTLVDKLKMAPALVFSA+ KPKLAGAEAE
Sbjct: 61  NTAIRCFLRRRGSADDDPSDSRQEELQDETKPTLVDKLKMAPALVFSAETKPKLAGAEAE 120

Query: 121 CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSSVSGGDG 180
           CTICLTEF EGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSP SSVSGGDG
Sbjct: 121 CTICLTEFLEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPPSSVSGGDG 180

Query: 181 D 182
           D
Sbjct: 181 D 181

[Close]

BLAST of HG10008980 vs. NCBI nr
Match: XP_008437481.1 (PREDICTED: RING-H2 finger protein ATL79-like [Cucumis melo] >KAA0042624.1 RING-H2 finger protein ATL79-like [Cucumis melo var. makuwa] >TYK06025.1 RING-H2 finger protein ATL79-like [Cucumis melo var. makuwa])

HSP 1 Score: 356.7 bits (914), Expect = 1.2e-94
Identity = 171/182 (93.96%), Postives = 180/182 (98.90%), Query Frame = 0


Query: 1   MRPTPLDADDTIRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60
           MRPTPLDAD+T+RFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL
Sbjct: 1   MRPTPLDADETVRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60

Query: 61  NTAIRCFLRRRGSADDDPSDSRQEELQDETKPTLVDKLKMAPALVFSADMKPKLAGAEAE 120
           NTAIRCFLRRRG++DDD +DSRQEELQ+ETKPTLV+KLKMAPALVFSA+MKPKLAGAEAE
Sbjct: 61  NTAIRCFLRRRGTSDDDSNDSRQEELQEETKPTLVEKLKMAPALVFSAEMKPKLAGAEAE 120

Query: 121 CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSSVSGGDG 180
           CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLI HSSCPTCRRSYLPPSPSSSVSGGDG
Sbjct: 121 CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSVSGGDG 180

Query: 181 DP 183
           +P
Sbjct: 181 NP 182

[Close]

BLAST of HG10008980 vs. NCBI nr
Match: XP_004145965.1 (RING-H2 finger protein ATL79 [Cucumis sativus] >KGN49952.1 hypothetical protein Csa_000591 [Cucumis sativus])

HSP 1 Score: 352.8 bits (904), Expect = 1.7e-93
Identity = 169/182 (92.86%), Postives = 178/182 (97.80%), Query Frame = 0


Query: 1   MRPTPLDADDTIRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60
           MRPTPLDADDT+RFQPPPSPPCHDLRACTWRPYS+SRDFEANAAVVVIILLCGLICALAL
Sbjct: 1   MRPTPLDADDTVRFQPPPSPPCHDLRACTWRPYSSSRDFEANAAVVVIILLCGLICALAL 60

Query: 61  NTAIRCFLRRRGSADDDPSDSRQEELQDETKPTLVDKLKMAPALVFSADMKPKLAGAEAE 120
           NTAIRCFLRRRG++DDD SDSRQEEL +ETKPTL+DKLKMAPALVFSA+MKPKLAGAEAE
Sbjct: 61  NTAIRCFLRRRGTSDDDSSDSRQEELPEETKPTLMDKLKMAPALVFSAEMKPKLAGAEAE 120

Query: 121 CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSSVSGGDG 180
           CTICLTEFSEGEEIRVL+ICKHGFHVQCIQTWLI HSSCPTCRRSYLPPSPSSS SGGDG
Sbjct: 121 CTICLTEFSEGEEIRVLSICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSASGGDG 180

Query: 181 DP 183
           +P
Sbjct: 181 NP 182

[Close]

BLAST of HG10008980 vs. NCBI nr
Match: KAG7017072.1 (RING-H2 finger protein ATL79, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 342.8 bits (878), Expect = 1.8e-90
Identity = 166/182 (91.21%), Postives = 175/182 (96.15%), Query Frame = 0


Query: 1   MRPTPLDADDTIRFQ-PPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALA 60
           MRPTPLDADDT+ FQ PPP PPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLIC+LA
Sbjct: 1   MRPTPLDADDTVSFQPPPPPPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICSLA 60

Query: 61  LNTAIRCFLRRRGSADDDPSDSRQEELQDETKPTLVDKLKMAPALVFSADMKPKLAGAEA 120
           LNTAIRCFLRRRG AD++PSD+RQEEL+DETKPTLVDKLKMAPALVFSA++KPKLAGAEA
Sbjct: 61  LNTAIRCFLRRRGDADENPSDTRQEELRDETKPTLVDKLKMAPALVFSAEIKPKLAGAEA 120

Query: 121 ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSSVSGGD 180
           ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCR SYLPPSPSS+  GGD
Sbjct: 121 ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRCSYLPPSPSSAAHGGD 180

Query: 181 GD 182
           GD
Sbjct: 181 GD 182

[Close]

BLAST of HG10008980 vs. NCBI nr
Match: XP_022928967.1 (RING-H2 finger protein ATL79-like [Cucurbita moschata] >KAG6579615.1 RING-H2 finger protein ATL79, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 342.8 bits (878), Expect = 1.8e-90
Identity = 166/182 (91.21%), Postives = 175/182 (96.15%), Query Frame = 0


Query: 1   MRPTPLDADDTIRFQ-PPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALA 60
           MRPTPLDADDT+ FQ PPP PPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLIC+LA
Sbjct: 1   MRPTPLDADDTVSFQPPPPPPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICSLA 60

Query: 61  LNTAIRCFLRRRGSADDDPSDSRQEELQDETKPTLVDKLKMAPALVFSADMKPKLAGAEA 120
           LNTAIRCFLRRRG AD++PSD+RQEEL+DETKPTLVDKLKMAPALVFSA++KPKLAGAEA
Sbjct: 61  LNTAIRCFLRRRGDADENPSDTRQEELRDETKPTLVDKLKMAPALVFSAEIKPKLAGAEA 120

Query: 121 ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSSVSGGD 180
           ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCR SYLPPSPSS+  GGD
Sbjct: 121 ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRCSYLPPSPSSAAHGGD 180

Query: 181 GD 182
           GD
Sbjct: 181 GD 182

[Close]

BLAST of HG10008980 vs. ExPASy Swiss-Prot
Match: Q9FGJ6 (RING-H2 finger protein ATL79 OS=Arabidopsis thaliana OX=3702 GN=ATL79 PE=2 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 8.0e-33
Identity = 78/161 (48.45%), Postives = 102/161 (63.35%), Query Frame = 0


Query: 19  SPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALALNTAIRCFLRRRGSADDDP 78
           +P C+    C W+PYSNS DF ANA+V++I+++  LICAL+L  AIRCFLR     +DD 
Sbjct: 17  TPTCNS-HTCRWKPYSNSTDFTANASVLLILVISALICALSLYAAIRCFLRPTLETEDD- 76

Query: 79  SDSRQEELQDETKPTLVDKLKMAPALVFSADMKPKLAGAEAECTICLTEFSEGEEIRVLA 138
                 E    + PT        P LV+S+D+  +LAGAEAEC ICL+EF +GE I+VL 
Sbjct: 77  -HKPDPEAAASSTPT-------TPTLVYSSDL--ELAGAEAECAICLSEFEQGESIQVLE 136

Query: 139 ICKHGFHVQCIQTWLILHSSCPTCRRSYL---PPSPSSSVS 177
            C+HGFHV+CI  WL   SSCPTCR S       +PSS ++
Sbjct: 137 KCQHGFHVKCIHKWLSTRSSCPTCRTSIFSQHSETPSSHIN 165

[Close]

BLAST of HG10008980 vs. ExPASy Swiss-Prot
Match: Q9FLC6 (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.5e-23
Identity = 62/148 (41.89%), Postives = 87/148 (58.78%), Query Frame = 0


Query: 35  NSRDFEANAAVVVIILLCGLICALALNTAIRCFLR--RRGSADDDPSDSRQEELQDETKP 94
           N    + +  +++  LLC LICAL +N+ +RC LR  RR + ++DP D+     +   K 
Sbjct: 33  NIASMDTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNEDPVDTNANVAKGIKKR 92

Query: 95  TLVDKLKMAPALVFSADMKPKLAGAEAECTICLTEFSEGEEIRVLAICKHGFHVQCIQTW 154
                LK+ P   +S ++K K      EC ICL +F EGE +RVL  C HGFHV+CI TW
Sbjct: 93  A----LKVIPVDSYSPELKMK----ATECLICLGDFVEGETVRVLPKCNHGFHVKCIDTW 152

Query: 155 LILHSSCPTCRRSYLP-PSPSSSVSGGD 180
           L+ HSSCPTCR+S L   +P++    GD
Sbjct: 153 LLSHSSCPTCRQSLLEHQTPANGSRRGD 172

[Close]

BLAST of HG10008980 vs. ExPASy Swiss-Prot
Match: Q9SG96 (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 9.8e-23
Identity = 69/157 (43.95%), Postives = 92/157 (58.60%), Query Frame = 0


Query: 35  NSRDFEANAAVVVIILLCGLICALALNTAIRCFLR--RRGSADDDPSD--SRQEELQDET 94
           N   F+ N  +++  LLC LICAL+LN+A+RC LR  RR ++DD  S+  +    L    
Sbjct: 25  NDTYFDTNMVIILAALLCALICALSLNSALRCVLRITRRFTSDDQVSNASNANANLGRLA 84

Query: 95  KPTLVDK--LKMAPALVFSA---DMKPKLAGAEAECTICLTEFSEGEEIRVLAICKHGFH 154
             T + K  LK  P  ++ +   DMK        EC ICL +F +GE++RVL  C HGFH
Sbjct: 85  AATGLKKQALKQIPVGLYGSGIIDMK------ATECLICLGDFEDGEKVRVLPKCNHGFH 144

Query: 155 VQCIQTWLILHSSCPTCRRSYLPPSPS-SSVSGGDGD 182
           V+CI TWL+  SSCPTCR+S L   PS  +VS  D D
Sbjct: 145 VRCIDTWLLSRSSCPTCRQSLLLEQPSPMAVSRRDED 175

[Close]

BLAST of HG10008980 vs. ExPASy Swiss-Prot
Match: Q6NQG7 (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.1e-21
Identity = 53/132 (40.15%), Postives = 75/132 (56.82%), Query Frame = 0


Query: 32  PYSNSRDFEANAAVVVIILLCGLICALALNTAIRCFLRRRGSADDDPSDSRQEELQDETK 91
           PY    +F+AN  +V+ +LLC L+C+L LN+ IRC LR    ++  PS++  +       
Sbjct: 45  PYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALR---CSNLVPSEAGGDNYPVRLT 104

Query: 92  PTLVDKLKMAPALVFSADMKPKLAGAEAECTICLTEFSEGEEIRVLAICKHGFHVQCIQT 151
            T V +  +      S   +  L G + EC ICL+EF   E +++L  C HGFHV+CI  
Sbjct: 105 NTGVKRKALKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDK 164

Query: 152 WLILHSSCPTCR 164
           WL  HSSCPTCR
Sbjct: 165 WLSSHSSCPTCR 173

[Close]

BLAST of HG10008980 vs. ExPASy Swiss-Prot
Match: O22755 (Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=ATL44 PE=1 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.3e-19
Identity = 61/158 (38.61%), Postives = 79/158 (50.00%), Query Frame = 0


Query: 16  PPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALALNTAIRC-FLRRRGSA 75
           PPP P    + A            E++  V++  LLC LIC   L   +RC +LRR  + 
Sbjct: 13  PPPQPSEEMIAA------------ESDMVVILSALLCALICVAGLAAVVRCAWLRRFTAG 72

Query: 76  DDDPSDSRQEELQDETKPTLVDKLKMAPALVFSADMKPKLAGAE----AECTICLTEFSE 135
            D PS +         K      L+  P   F+A      A AE     EC ICLT+F++
Sbjct: 73  GDSPSPN---------KGLKKKALQSLPRSTFTAAESTSGAAAEEGDSTECAICLTDFAD 132

Query: 136 GEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLP 169
           GEEIRVL +C H FHV+CI  WL+  SSCP+CRR   P
Sbjct: 133 GEEIRVLPLCGHSFHVECIDKWLVSRSSCPSCRRILTP 149

[Close]

BLAST of HG10008980 vs. ExPASy TrEMBL
Match: A0A5D3C3S3 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001240 PE=3 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 5.8e-95
Identity = 171/182 (93.96%), Postives = 180/182 (98.90%), Query Frame = 0


Query: 1   MRPTPLDADDTIRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60
           MRPTPLDAD+T+RFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL
Sbjct: 1   MRPTPLDADETVRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60

Query: 61  NTAIRCFLRRRGSADDDPSDSRQEELQDETKPTLVDKLKMAPALVFSADMKPKLAGAEAE 120
           NTAIRCFLRRRG++DDD +DSRQEELQ+ETKPTLV+KLKMAPALVFSA+MKPKLAGAEAE
Sbjct: 61  NTAIRCFLRRRGTSDDDSNDSRQEELQEETKPTLVEKLKMAPALVFSAEMKPKLAGAEAE 120

Query: 121 CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSSVSGGDG 180
           CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLI HSSCPTCRRSYLPPSPSSSVSGGDG
Sbjct: 121 CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSVSGGDG 180

Query: 181 DP 183
           +P
Sbjct: 181 NP 182

[Close]

BLAST of HG10008980 vs. ExPASy TrEMBL
Match: A0A1S3AU49 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103482889 PE=3 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 5.8e-95
Identity = 171/182 (93.96%), Postives = 180/182 (98.90%), Query Frame = 0


Query: 1   MRPTPLDADDTIRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60
           MRPTPLDAD+T+RFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL
Sbjct: 1   MRPTPLDADETVRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60

Query: 61  NTAIRCFLRRRGSADDDPSDSRQEELQDETKPTLVDKLKMAPALVFSADMKPKLAGAEAE 120
           NTAIRCFLRRRG++DDD +DSRQEELQ+ETKPTLV+KLKMAPALVFSA+MKPKLAGAEAE
Sbjct: 61  NTAIRCFLRRRGTSDDDSNDSRQEELQEETKPTLVEKLKMAPALVFSAEMKPKLAGAEAE 120

Query: 121 CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSSVSGGDG 180
           CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLI HSSCPTCRRSYLPPSPSSSVSGGDG
Sbjct: 121 CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSVSGGDG 180

Query: 181 DP 183
           +P
Sbjct: 181 NP 182

[Close]

BLAST of HG10008980 vs. ExPASy TrEMBL
Match: A0A0A0KNJ7 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_5G146260 PE=3 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 8.4e-94
Identity = 169/182 (92.86%), Postives = 178/182 (97.80%), Query Frame = 0


Query: 1   MRPTPLDADDTIRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60
           MRPTPLDADDT+RFQPPPSPPCHDLRACTWRPYS+SRDFEANAAVVVIILLCGLICALAL
Sbjct: 1   MRPTPLDADDTVRFQPPPSPPCHDLRACTWRPYSSSRDFEANAAVVVIILLCGLICALAL 60

Query: 61  NTAIRCFLRRRGSADDDPSDSRQEELQDETKPTLVDKLKMAPALVFSADMKPKLAGAEAE 120
           NTAIRCFLRRRG++DDD SDSRQEEL +ETKPTL+DKLKMAPALVFSA+MKPKLAGAEAE
Sbjct: 61  NTAIRCFLRRRGTSDDDSSDSRQEELPEETKPTLMDKLKMAPALVFSAEMKPKLAGAEAE 120

Query: 121 CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSSVSGGDG 180
           CTICLTEFSEGEEIRVL+ICKHGFHVQCIQTWLI HSSCPTCRRSYLPPSPSSS SGGDG
Sbjct: 121 CTICLTEFSEGEEIRVLSICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSASGGDG 180

Query: 181 DP 183
           +P
Sbjct: 181 NP 182

[Close]

BLAST of HG10008980 vs. ExPASy TrEMBL
Match: A0A6J1ELF7 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111435709 PE=3 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 8.7e-91
Identity = 166/182 (91.21%), Postives = 175/182 (96.15%), Query Frame = 0


Query: 1   MRPTPLDADDTIRFQ-PPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALA 60
           MRPTPLDADDT+ FQ PPP PPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLIC+LA
Sbjct: 1   MRPTPLDADDTVSFQPPPPPPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICSLA 60

Query: 61  LNTAIRCFLRRRGSADDDPSDSRQEELQDETKPTLVDKLKMAPALVFSADMKPKLAGAEA 120
           LNTAIRCFLRRRG AD++PSD+RQEEL+DETKPTLVDKLKMAPALVFSA++KPKLAGAEA
Sbjct: 61  LNTAIRCFLRRRGDADENPSDTRQEELRDETKPTLVDKLKMAPALVFSAEIKPKLAGAEA 120

Query: 121 ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSSVSGGD 180
           ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCR SYLPPSPSS+  GGD
Sbjct: 121 ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRCSYLPPSPSSAAHGGD 180

Query: 181 GD 182
           GD
Sbjct: 181 GD 182

[Close]

BLAST of HG10008980 vs. ExPASy TrEMBL
Match: A0A6J1I2W6 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111469099 PE=3 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 1.4e-88
Identity = 162/180 (90.00%), Postives = 172/180 (95.56%), Query Frame = 0


Query: 1   MRPTPLDADDTIRFQPP-PSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALA 60
           MRPTPLDADDT+ ++PP P PPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLIC+LA
Sbjct: 1   MRPTPLDADDTVSYRPPSPPPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICSLA 60

Query: 61  LNTAIRCFLRRRGSADDDPSDSRQEELQDETKPTLVDKLKMAPALVFSADMKPKLAGAEA 120
           LNTAIRCFLRRRG AD++PSD+RQEEL+DETKPTLVDKLKMAPALVFS +MKPKLAGAEA
Sbjct: 61  LNTAIRCFLRRRGDADENPSDTRQEELRDETKPTLVDKLKMAPALVFSEEMKPKLAGAEA 120

Query: 121 ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSSVSGGD 180
           ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCR SYLPPSPSS+  GGD
Sbjct: 121 ECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRCSYLPPSPSSAAHGGD 180

[Close]

BLAST of HG10008980 vs. TAIR 10
Match: AT5G47610.1 (RING/U-box superfamily protein )

HSP 1 Score: 141.7 bits (356), Expect = 5.7e-34
Identity = 78/161 (48.45%), Postives = 102/161 (63.35%), Query Frame = 0


Query: 19  SPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALALNTAIRCFLRRRGSADDDP 78
           +P C+    C W+PYSNS DF ANA+V++I+++  LICAL+L  AIRCFLR     +DD 
Sbjct: 17  TPTCNS-HTCRWKPYSNSTDFTANASVLLILVISALICALSLYAAIRCFLRPTLETEDD- 76

Query: 79  SDSRQEELQDETKPTLVDKLKMAPALVFSADMKPKLAGAEAECTICLTEFSEGEEIRVLA 138
                 E    + PT        P LV+S+D+  +LAGAEAEC ICL+EF +GE I+VL 
Sbjct: 77  -HKPDPEAAASSTPT-------TPTLVYSSDL--ELAGAEAECAICLSEFEQGESIQVLE 136

Query: 139 ICKHGFHVQCIQTWLILHSSCPTCRRSYL---PPSPSSSVS 177
            C+HGFHV+CI  WL   SSCPTCR S       +PSS ++
Sbjct: 137 KCQHGFHVKCIHKWLSTRSSCPTCRTSIFSQHSETPSSHIN 165

[Close]

BLAST of HG10008980 vs. TAIR 10
Match: AT4G17245.1 (RING/U-box superfamily protein )

HSP 1 Score: 123.2 bits (308), Expect = 2.1e-28
Identity = 74/158 (46.84%), Postives = 90/158 (56.96%), Query Frame = 0


Query: 15  QPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALALNTAIRCFLRRRGSA 74
           QP  +  C    +C W+PYS+S DF ANA +++IIL C  IC L+L+ AIRC LR     
Sbjct: 10  QPELTSTCTS-HSCGWKPYSHSNDFAANAFLLLIILFCSFICVLSLHAAIRCCLRPVLQH 69

Query: 75  DDDPSDSRQEELQDETKPTLVDKLKMAPALVFSADMKPKLAGAEAECTICLTEFSEGEEI 134
              P D   E    +  PTLV     +P L         LAG EAEC ICL+EF +G+ +
Sbjct: 70  VPKP-DPDLEATHPDAPPTLV----YSPGL--------NLAGNEAECIICLSEFQDGDTL 129

Query: 135 RVLAICKHGFHVQCIQTWL-ILHSSCPTCRRSYLPPSP 172
           RVL  CKHGFHV CIQ WL   HSSCPTCR +     P
Sbjct: 130 RVLERCKHGFHVYCIQKWLSSSHSSCPTCRTNIFSSPP 153

[Close]

BLAST of HG10008980 vs. TAIR 10
Match: AT5G05280.1 (RING/U-box superfamily protein )

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-24
Identity = 62/148 (41.89%), Postives = 87/148 (58.78%), Query Frame = 0


Query: 35  NSRDFEANAAVVVIILLCGLICALALNTAIRCFLR--RRGSADDDPSDSRQEELQDETKP 94
           N    + +  +++  LLC LICAL +N+ +RC LR  RR + ++DP D+     +   K 
Sbjct: 33  NIASMDTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNEDPVDTNANVAKGIKKR 92

Query: 95  TLVDKLKMAPALVFSADMKPKLAGAEAECTICLTEFSEGEEIRVLAICKHGFHVQCIQTW 154
                LK+ P   +S ++K K      EC ICL +F EGE +RVL  C HGFHV+CI TW
Sbjct: 93  A----LKVIPVDSYSPELKMK----ATECLICLGDFVEGETVRVLPKCNHGFHVKCIDTW 152

Query: 155 LILHSSCPTCRRSYLP-PSPSSSVSGGD 180
           L+ HSSCPTCR+S L   +P++    GD
Sbjct: 153 LLSHSSCPTCRQSLLEHQTPANGSRRGD 172

[Close]

BLAST of HG10008980 vs. TAIR 10
Match: AT3G10910.1 (RING/U-box superfamily protein )

HSP 1 Score: 108.2 bits (269), Expect = 6.9e-24
Identity = 69/157 (43.95%), Postives = 92/157 (58.60%), Query Frame = 0


Query: 35  NSRDFEANAAVVVIILLCGLICALALNTAIRCFLR--RRGSADDDPSD--SRQEELQDET 94
           N   F+ N  +++  LLC LICAL+LN+A+RC LR  RR ++DD  S+  +    L    
Sbjct: 25  NDTYFDTNMVIILAALLCALICALSLNSALRCVLRITRRFTSDDQVSNASNANANLGRLA 84

Query: 95  KPTLVDK--LKMAPALVFSA---DMKPKLAGAEAECTICLTEFSEGEEIRVLAICKHGFH 154
             T + K  LK  P  ++ +   DMK        EC ICL +F +GE++RVL  C HGFH
Sbjct: 85  AATGLKKQALKQIPVGLYGSGIIDMK------ATECLICLGDFEDGEKVRVLPKCNHGFH 144

Query: 155 VQCIQTWLILHSSCPTCRRSYLPPSPS-SSVSGGDGD 182
           V+CI TWL+  SSCPTCR+S L   PS  +VS  D D
Sbjct: 145 VRCIDTWLLSRSSCPTCRQSLLLEQPSPMAVSRRDED 175

[Close]

BLAST of HG10008980 vs. TAIR 10
Match: AT1G49230.1 (RING/U-box superfamily protein )

HSP 1 Score: 103.2 bits (256), Expect = 2.2e-22
Identity = 53/132 (40.15%), Postives = 75/132 (56.82%), Query Frame = 0


Query: 32  PYSNSRDFEANAAVVVIILLCGLICALALNTAIRCFLRRRGSADDDPSDSRQEELQDETK 91
           PY    +F+AN  +V+ +LLC L+C+L LN+ IRC LR    ++  PS++  +       
Sbjct: 45  PYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALR---CSNLVPSEAGGDNYPVRLT 104

Query: 92  PTLVDKLKMAPALVFSADMKPKLAGAEAECTICLTEFSEGEEIRVLAICKHGFHVQCIQT 151
            T V +  +      S   +  L G + EC ICL+EF   E +++L  C HGFHV+CI  
Sbjct: 105 NTGVKRKALKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDK 164

Query: 152 WLILHSSCPTCR 164
           WL  HSSCPTCR
Sbjct: 165 WLSSHSSCPTCR 173

The following BLAST results are available for this feature:

BLAST of HG10008980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875287.1	6.4e-96	96.69	RING-H2 finger protein ATL79-like [Benincasa hispida]	[more]
XP_008437481.1	1.2e-94	93.96	PREDICTED: RING-H2 finger protein ATL79-like [Cucumis melo] >KAA0042624.1 RING-H...	[more]
XP_004145965.1	1.7e-93	92.86	RING-H2 finger protein ATL79 [Cucumis sativus] >KGN49952.1 hypothetical protein ...	[more]
KAG7017072.1	1.8e-90	91.21	RING-H2 finger protein ATL79, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
XP_022928967.1	1.8e-90	91.21	RING-H2 finger protein ATL79-like [Cucurbita moschata] >KAG6579615.1 RING-H2 fin...	[more]

BLAST of HG10008980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FGJ6	8.0e-33	48.45	RING-H2 finger protein ATL79 OS=Arabidopsis thaliana OX=3702 GN=ATL79 PE=2 SV=1	[more]
Q9FLC6	1.5e-23	41.89	RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1	[more]
Q9SG96	9.8e-23	43.95	RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1	[more]
Q6NQG7	3.1e-21	40.15	RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1	[more]
O22755	2.3e-19	38.61	Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=AT...	[more]

BLAST of HG10008980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C3S3	5.8e-95	93.96	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3AU49	5.8e-95	93.96	RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103482889 PE=3 ...	[more]
A0A0A0KNJ7	8.4e-94	92.86	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_5G146260 PE...	[more]
A0A6J1ELF7	8.7e-91	91.21	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111435709...	[more]
A0A6J1I2W6	1.4e-88	90.00	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111469099 P...	[more]

BLAST of HG10008980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G47610.1	5.7e-34	48.45	RING/U-box superfamily protein	[more]
AT4G17245.1	2.1e-28	46.84	RING/U-box superfamily protein	[more]
AT5G05280.1	1.1e-24	41.89	RING/U-box superfamily protein	[more]
AT3G10910.1	6.9e-24	43.95	RING/U-box superfamily protein	[more]
AT1G49230.1	2.2e-22	40.15	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 121..162 e-value: 1.2E-5 score: 34.8
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 120..163 e-value: 2.4E-12 score: 47.0
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 121..163 score: 12.090947
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 78..168 e-value: 6.1E-20 score: 72.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..92
None	No IPR available	PANTHER	PTHR46905:SF1	RING-H2 FINGER PROTEIN ATL79-LIKE	coord: 15..176
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 120..169
IPR044602	RING-H2 finger protein ATL10/ATL75-79	PANTHER	PTHR46905	RING-H2 FINGER PROTEIN ATL78	coord: 15..176

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10008980.1	HG10008980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016740	transferase activity