HG10008960 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10008960
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	30S ribosomal protein S9
Location	Chr06: 1109855 .. 1111525 (-)
RNA-Seq Expression	HG10008960
Synteny	HG10008960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAACTGCAGGTCCTAATCGAGCATTTGGAGATCTTATTGCTGCATCAGGAATCACGGATGACATGCTAGACAGTTTGATTGCTTTGAAAGATTTGGAAGGGGTTGAGGGGTTGCCCCCTCTAAGGGACATAGAGGATATGCGTTATGAGAAAAACACAAGAAAATCCTCAAGAGCTGAAATTGAGCGTCAGAAACAAGAAGAAGTTGCAAAAGCAAGAGTGAGACAGGTAGATGACAAAGGAAGAGCATATGGCACAGGAAGAAGGAAATGCAGCATTGCTCGTGTATGGATTCAGCCAGGAGATGGCAAGTTCATAGTGAATGATAAAGAATTTGATGTCTATTTTCCAATGCTCGATAGTCGTGCTGCTCTTCTTCGACCTTTCTCTGAGACCAAAACATTAGGCCTTTGGGATGTCAAATGTACTGTTAAAGGAGGTGGTACAACAGGTAAGCTTAAGCTCTAAAATAACATTCAACTATTCTCGTTACATGTTTATATTTAGTTATGTCTGTTCTTAAGTTGCGTTTTTATGGTTTTTGTGTTCTGCTTTCCGCAGTCCATTTTCTTGTCACTAGTTCTCCTTTGGCATTGAGTGGGTTAACACCTCTTATTGCGTTGCCTAATTCTGTGTACTTATCTCACTTTAATGAAAAGCTCTCTTAATTTTTTTTTCTTCTGCAACTACTTTGCAACTTATCAGTTTCATTGTATAGTATTTCATTTCATCGCACATAATTAAATCTTGCTATTCAAACATAGAATATGCATTTGAAACAAAGGCCCAAGTTAGTATATATGTTATGATTGAGACAAAAATAAATGTTTATGTTTGACTTCAGTCTGTGCTTAATGCATAAACTTCTTTGGTTTATGTTCTACAACCATAGAAGTTCAAATAAATGTGAACTTCATCATAGAGCTGGTGACTTCGAACTTGGGGTTATCCTGGTCTTATGATACCCCCTCCCCTCTTTCCCAGACCTGAGTACCGCTGTTCACAACAGTAAACTCTCTTCTTTACTCCCATTATATTAGTTCCTCGTTGTTCACATCACAACTTTCTTTCATCACAACTAATGCACAATCTAAGCGCTGCTCCCTTTAACCTGTTTTCATTGTGTACCTTTTATGATCAATGTAAGATCTATTAATGCCAGCTCCTCAGTCTAATGGTTGGATGTAAACATTTATGTTTTTGACTATATTAGGAAGGATGCATTAAAGTTCCGACTTCGGTGCTTATATGTTTATGCTTCTTCTGGAGTTCTATCCTGTTTCGAAGTCATTGAAAGTCAACTATTTTTGCTTCAATCTGTTCCAAATACAAATTTCCTTCTCTCTACCCTTTTCATATGTGTTTTCTCAAGTGTGTGAAATTTCTGAACCTTCTGGGTTACAGGCCAAGTTGGAGCTGTTCAGTTGGGTATCAGCAGAGCCTTGCAGAATTGGGAGCCCGATCTCCGTCCTCCATTGCGAGCATGTAAGATATGGTCAGATATGATGAGAATGATACATAAGCATATATTTGTGTATTTTACTGATCAAAATTTTCTTTTCTATTTGCTTGGTAGCTGGTTTCTTGACCCGAGATGCACGTGTCGTAGAAAGAAAGAAGCCAGGAAAGGCGAAAGCAAGAAAGAGCTTCCAATGGGTGAAGCGTTAG

mRNA sequence

ATGTCAACTGCAGGTCCTAATCGAGCATTTGGAGATCTTATTGCTGCATCAGGAATCACGGATGACATGCTAGACAGTTTGATTGCTTTGAAAGATTTGGAAGGGGTTGAGGGGTTGCCCCCTCTAAGGGACATAGAGGATATGCGTTATGAGAAAAACACAAGAAAATCCTCAAGAGCTGAAATTGAGCGTCAGAAACAAGAAGAAGTTGCAAAAGCAAGAGTGAGACAGGTAGATGACAAAGGAAGAGCATATGGCACAGGAAGAAGGAAATGCAGCATTGCTCGTGTATGGATTCAGCCAGGAGATGGCAAGTTCATAGTGAATGATAAAGAATTTGATGTCTATTTTCCAATGCTCGATAGTCGTGCTGCTCTTCTTCGACCTTTCTCTGAGACCAAAACATTAGGCCTTTGGGATGTCAAATGTACTGTTAAAGGAGGTGGTACAACAGGCCAAGTTGGAGCTGTTCAGTTGGGTATCAGCAGAGCCTTGCAGAATTGGGAGCCCGATCTCCGTCCTCCATTGCGAGCATCTGGTTTCTTGACCCGAGATGCACGTGTCGTAGAAAGAAAGAAGCCAGGAAAGGCGAAAGCAAGAAAGAGCTTCCAATGGGTGAAGCGTTAG

Coding sequence (CDS)

ATGTCAACTGCAGGTCCTAATCGAGCATTTGGAGATCTTATTGCTGCATCAGGAATCACGGATGACATGCTAGACAGTTTGATTGCTTTGAAAGATTTGGAAGGGGTTGAGGGGTTGCCCCCTCTAAGGGACATAGAGGATATGCGTTATGAGAAAAACACAAGAAAATCCTCAAGAGCTGAAATTGAGCGTCAGAAACAAGAAGAAGTTGCAAAAGCAAGAGTGAGACAGGTAGATGACAAAGGAAGAGCATATGGCACAGGAAGAAGGAAATGCAGCATTGCTCGTGTATGGATTCAGCCAGGAGATGGCAAGTTCATAGTGAATGATAAAGAATTTGATGTCTATTTTCCAATGCTCGATAGTCGTGCTGCTCTTCTTCGACCTTTCTCTGAGACCAAAACATTAGGCCTTTGGGATGTCAAATGTACTGTTAAAGGAGGTGGTACAACAGGCCAAGTTGGAGCTGTTCAGTTGGGTATCAGCAGAGCCTTGCAGAATTGGGAGCCCGATCTCCGTCCTCCATTGCGAGCATCTGGTTTCTTGACCCGAGATGCACGTGTCGTAGAAAGAAAGAAGCCAGGAAAGGCGAAAGCAAGAAAGAGCTTCCAATGGGTGAAGCGTTAG

Protein sequence

MSTAGPNRAFGDLIAASGITDDMLDSLIALKDLEGVEGLPPLRDIEDMRYEKNTRKSSRAEIERQKQEEVAKARVRQVDDKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDSRAALLRPFSETKTLGLWDVKCTVKGGGTTGQVGAVQLGISRALQNWEPDLRPPLRASGFLTRDARVVERKKPGKAKARKSFQWVKR

Homology

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BLAST of HG10008960 vs. NCBI nr
Match: XP_038874636.1 (30S ribosomal protein S9, mitochondrial isoform X1 [Benincasa hispida])

HSP 1 Score: 402.1 bits (1032), Expect = 2.9e-108
Identity = 200/204 (98.04%), Postives = 203/204 (99.51%), Query Frame = 0


Query: 5   GPNRAFGDLIAASGITDDMLDSLIALKDLEGVEGLPPLRDIEDMRYEKNTRKSSRAEIER 64
           GPNRAFGDLIAASGITDDMLDSLIALKDLEGVEGLPPL +IEDMRYEKNTRKSSRAEIER
Sbjct: 194 GPNRAFGDLIAASGITDDMLDSLIALKDLEGVEGLPPLSEIEDMRYEKNTRKSSRAEIER 253

Query: 65  QKQEEVAKARVRQVDDKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDSRA 124
           QKQEE+AKARVRQVDDKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDSRA
Sbjct: 254 QKQEEIAKARVRQVDDKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDSRA 313

Query: 125 ALLRPFSETKTLGLWDVKCTVKGGGTTGQVGAVQLGISRALQNWEPDLRPPLRASGFLTR 184
           ALLRPFSETKTLGLWDVKCTVKGGGTTGQVGA+QLGISRALQNWEPDLRPPLRASGFLTR
Sbjct: 314 ALLRPFSETKTLGLWDVKCTVKGGGTTGQVGAIQLGISRALQNWEPDLRPPLRASGFLTR 373

Query: 185 DARVVERKKPGKAKARKSFQWVKR 209
           DARVVERKKPGKAKARKSFQWVKR
Sbjct: 374 DARVVERKKPGKAKARKSFQWVKR 397

[Close]

BLAST of HG10008960 vs. NCBI nr
Match: KAG6579377.1 (30S ribosomal protein S9, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 396.0 bits (1016), Expect = 2.0e-106
Identity = 195/204 (95.59%), Postives = 201/204 (98.53%), Query Frame = 0


Query: 5   GPNRAFGDLIAASGITDDMLDSLIALKDLEGVEGLPPLRDIEDMRYEKNTRKSSRAEIER 64
           GPNRAFGDLIAASGITDDMLDSLIALKDLEGVEGLPPL  +EDMRYEKNTRKSSRAEIER
Sbjct: 194 GPNRAFGDLIAASGITDDMLDSLIALKDLEGVEGLPPLSVLEDMRYEKNTRKSSRAEIER 253

Query: 65  QKQEEVAKARVRQVDDKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDSRA 124
           QKQEEVAKARVRQ+DDKGRAYGTGRRKCSIARVW+QPGDGKF+VNDKEFDVYFPMLDSRA
Sbjct: 254 QKQEEVAKARVRQIDDKGRAYGTGRRKCSIARVWVQPGDGKFVVNDKEFDVYFPMLDSRA 313

Query: 125 ALLRPFSETKTLGLWDVKCTVKGGGTTGQVGAVQLGISRALQNWEPDLRPPLRASGFLTR 184
           ALLRPFSETKTLGLWDVKCTVKGGGTTGQVGA+QLGISRALQNWEPD RPPLRASGFLTR
Sbjct: 314 ALLRPFSETKTLGLWDVKCTVKGGGTTGQVGAIQLGISRALQNWEPDFRPPLRASGFLTR 373

Query: 185 DARVVERKKPGKAKARKSFQWVKR 209
           D+RVVERKKPGKAKARKSFQWVKR
Sbjct: 374 DSRVVERKKPGKAKARKSFQWVKR 397

[Close]

BLAST of HG10008960 vs. NCBI nr
Match: XP_023550446.1 (28S ribosomal protein S9, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 396.0 bits (1016), Expect = 2.0e-106
Identity = 195/204 (95.59%), Postives = 201/204 (98.53%), Query Frame = 0


Query: 5   GPNRAFGDLIAASGITDDMLDSLIALKDLEGVEGLPPLRDIEDMRYEKNTRKSSRAEIER 64
           GPNRAFGDLIAASGITDDMLDSLIALKDLEGVEGLPPL  +EDMRYEKNTRKSSRAEIER
Sbjct: 194 GPNRAFGDLIAASGITDDMLDSLIALKDLEGVEGLPPLSVLEDMRYEKNTRKSSRAEIER 253

Query: 65  QKQEEVAKARVRQVDDKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDSRA 124
           QKQEEVAKARVRQ+DDKGRAYGTGRRKCSIARVW+QPGDGKF+VNDKEFDVYFPMLDSRA
Sbjct: 254 QKQEEVAKARVRQIDDKGRAYGTGRRKCSIARVWVQPGDGKFVVNDKEFDVYFPMLDSRA 313

Query: 125 ALLRPFSETKTLGLWDVKCTVKGGGTTGQVGAVQLGISRALQNWEPDLRPPLRASGFLTR 184
           ALLRPFSETKTLGLWDVKCTVKGGGTTGQVGA+QLGISRALQNWEPD RPPLRASGFLTR
Sbjct: 314 ALLRPFSETKTLGLWDVKCTVKGGGTTGQVGAIQLGISRALQNWEPDFRPPLRASGFLTR 373

Query: 185 DARVVERKKPGKAKARKSFQWVKR 209
           D+RVVERKKPGKAKARKSFQWVKR
Sbjct: 374 DSRVVERKKPGKAKARKSFQWVKR 397

[Close]

BLAST of HG10008960 vs. NCBI nr
Match: XP_022972996.1 (28S ribosomal protein S9, mitochondrial [Cucurbita maxima])

HSP 1 Score: 396.0 bits (1016), Expect = 2.0e-106
Identity = 195/204 (95.59%), Postives = 201/204 (98.53%), Query Frame = 0


Query: 5   GPNRAFGDLIAASGITDDMLDSLIALKDLEGVEGLPPLRDIEDMRYEKNTRKSSRAEIER 64
           GPNRAFGDLIAASGITDDMLDSLIALKDLEGVEGLPPL  +EDMRYEKNTRKSSRAEIER
Sbjct: 194 GPNRAFGDLIAASGITDDMLDSLIALKDLEGVEGLPPLSVLEDMRYEKNTRKSSRAEIER 253

Query: 65  QKQEEVAKARVRQVDDKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDSRA 124
           QKQEEVAKARVRQ+DDKGRAYGTGRRKCSIARVW+QPGDGKF+VNDKEFDVYFPMLDSRA
Sbjct: 254 QKQEEVAKARVRQIDDKGRAYGTGRRKCSIARVWVQPGDGKFVVNDKEFDVYFPMLDSRA 313

Query: 125 ALLRPFSETKTLGLWDVKCTVKGGGTTGQVGAVQLGISRALQNWEPDLRPPLRASGFLTR 184
           ALLRPFSETKTLGLWDVKCTVKGGGTTGQVGA+QLGISRALQNWEPD RPPLRASGFLTR
Sbjct: 314 ALLRPFSETKTLGLWDVKCTVKGGGTTGQVGAIQLGISRALQNWEPDFRPPLRASGFLTR 373

Query: 185 DARVVERKKPGKAKARKSFQWVKR 209
           D+RVVERKKPGKAKARKSFQWVKR
Sbjct: 374 DSRVVERKKPGKAKARKSFQWVKR 397

[Close]

BLAST of HG10008960 vs. NCBI nr
Match: XP_022922373.1 (28S ribosomal protein S9, mitochondrial [Cucurbita moschata])

HSP 1 Score: 396.0 bits (1016), Expect = 2.0e-106
Identity = 195/204 (95.59%), Postives = 201/204 (98.53%), Query Frame = 0


Query: 5   GPNRAFGDLIAASGITDDMLDSLIALKDLEGVEGLPPLRDIEDMRYEKNTRKSSRAEIER 64
           GPNRAFGDLIAASGITDDMLDSLIALKDLEGVEGLPPL  +EDMRYEKNTRKSSRAEIER
Sbjct: 194 GPNRAFGDLIAASGITDDMLDSLIALKDLEGVEGLPPLSVLEDMRYEKNTRKSSRAEIER 253

Query: 65  QKQEEVAKARVRQVDDKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDSRA 124
           QKQEEVAKARVRQ+DDKGRAYGTGRRKCSIARVW+QPGDGKF+VNDKEFDVYFPMLDSRA
Sbjct: 254 QKQEEVAKARVRQIDDKGRAYGTGRRKCSIARVWVQPGDGKFVVNDKEFDVYFPMLDSRA 313

Query: 125 ALLRPFSETKTLGLWDVKCTVKGGGTTGQVGAVQLGISRALQNWEPDLRPPLRASGFLTR 184
           ALLRPFSETKTLGLWDVKCTVKGGGTTGQVGA+QLGISRALQNWEPD RPPLRASGFLTR
Sbjct: 314 ALLRPFSETKTLGLWDVKCTVKGGGTTGQVGAIQLGISRALQNWEPDFRPPLRASGFLTR 373

Query: 185 DARVVERKKPGKAKARKSFQWVKR 209
           D+RVVERKKPGKAKARKSFQWVKR
Sbjct: 374 DSRVVERKKPGKAKARKSFQWVKR 397

[Close]

BLAST of HG10008960 vs. ExPASy Swiss-Prot
Match: Q8L6Z4 (30S ribosomal protein S9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS9M PE=1 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 2.2e-95
Identity = 171/204 (83.82%), Postives = 191/204 (93.63%), Query Frame = 0


Query: 5   GPNRAFGDLIAASGITDDMLDSLIALKDLEGVEGLPPLRDIEDMRYEKNTRKSSRAEIER 64
           GP+RAFGDLIA SGITD+MLDSLIALKD +GVEGLPPL +IE++R EK+++KSSRAEIE 
Sbjct: 227 GPDRAFGDLIAKSGITDEMLDSLIALKDFQGVEGLPPLTEIENLRREKSSKKSSRAEIEL 286

Query: 65  QKQEEVAKARVRQVDDKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDSRA 124
           Q QE++AKARVRQVD+ GRAYGTGRRKCSIARVWIQPG+GKF VN+KEFDVYFPMLD RA
Sbjct: 287 QMQEDIAKARVRQVDETGRAYGTGRRKCSIARVWIQPGEGKFQVNEKEFDVYFPMLDHRA 346

Query: 125 ALLRPFSETKTLGLWDVKCTVKGGGTTGQVGAVQLGISRALQNWEPDLRPPLRASGFLTR 184
           ALLRP +ETKTLG WD+KCTVKGGGTTGQVGA+QLGISRALQNWEPD+R  LRA+GFLTR
Sbjct: 347 ALLRPLAETKTLGRWDIKCTVKGGGTTGQVGAIQLGISRALQNWEPDMRTSLRAAGFLTR 406

Query: 185 DARVVERKKPGKAKARKSFQWVKR 209
           D+RVVERKKPGKAKARKSFQWVKR
Sbjct: 407 DSRVVERKKPGKAKARKSFQWVKR 430

[Close]

BLAST of HG10008960 vs. ExPASy Swiss-Prot
Match: A8I7Z9 (30S ribosomal protein S9 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / NBRC 14845 / NCIMB 13405 / ORS 571) OX=438753 GN=rpsI PE=3 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 6.1e-37
Identity = 77/138 (55.80%), Postives = 101/138 (73.19%), Query Frame = 0


Query: 71  AKARVRQVDDKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDSRAALLRPF 130
           A   V+++D  GRAY TG+RK ++ARVW++PG GK IVND+  +VYF     R  + +PF
Sbjct: 17  APVHVQKLDKFGRAYATGKRKDAVARVWVRPGTGKIIVNDRPVEVYFARPVLRLIINQPF 76

Query: 131 SETKTLGLWDVKCTVKGGGTTGQVGAVQLGISRALQNWEPDLRPPLRASGFLTRDARVVE 190
           +     G +DV CTV GGG +GQ GA++ GISRAL  +EP+LR PL+  GFLTRD+RVVE
Sbjct: 77  AAAAREGAYDVVCTVSGGGLSGQAGALRHGISRALTFYEPELRGPLKKGGFLTRDSRVVE 136

Query: 191 RKKPGKAKARKSFQWVKR 209
           RKK G+AKAR+SFQ+ KR
Sbjct: 137 RKKYGRAKARRSFQFSKR 154

[Close]

BLAST of HG10008960 vs. ExPASy Swiss-Prot
Match: A9IVX6 (30S ribosomal protein S9 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) OX=382640 GN=rpsI PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.4e-36
Identity = 78/144 (54.17%), Postives = 102/144 (70.83%), Query Frame = 0


Query: 65  QKQEEVAKARVRQVDDKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDSRA 124
           +  E V    V+++D +GRAY TG+RK ++ARVWI+PG GK I+N+KEFD YF     R 
Sbjct: 18  EPHENVVPVHVQKLDSQGRAYATGKRKDAVARVWIKPGSGKIIINNKEFDKYFARPVLRM 77

Query: 125 ALLRPFSETKTLGLWDVKCTVKGGGTTGQVGAVQLGISRALQNWEPDLRPPLRASGFLTR 184
            L +P   T     +D+  TV GGG +GQ GA++ GIS+AL  +EP+LRP L+  GFLTR
Sbjct: 78  ILRQPIVATNRDTQFDIVATVAGGGLSGQAGAIRHGISKALTYYEPELRPILKKGGFLTR 137

Query: 185 DARVVERKKPGKAKARKSFQWVKR 209
           D+RVVERKK GKAKAR+SFQ+ KR
Sbjct: 138 DSRVVERKKYGKAKARRSFQFSKR 161

[Close]

BLAST of HG10008960 vs. ExPASy Swiss-Prot
Match: A7INH2 (30S ribosomal protein S9 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) OX=78245 GN=rpsI PE=3 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.8e-36
Identity = 74/138 (53.62%), Postives = 100/138 (72.46%), Query Frame = 0


Query: 71  AKARVRQVDDKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDSRAALLRPF 130
           A   V+++D  GRAY TG+RK ++ARVW++PG GK  +ND++ +VYF     R  + +PF
Sbjct: 23  APVHVQKLDKYGRAYATGKRKNAVARVWVRPGTGKVTINDRDIEVYFARPVLRLMINQPF 82

Query: 131 SETKTLGLWDVKCTVKGGGTTGQVGAVQLGISRALQNWEPDLRPPLRASGFLTRDARVVE 190
                 G +DV CTV GGG +GQ GAV+ GIS+AL  +EP+LR PL+  GF+TRD+RVVE
Sbjct: 83  QAAAREGQYDVVCTVSGGGLSGQAGAVRHGISKALTYYEPELRSPLKKGGFITRDSRVVE 142

Query: 191 RKKPGKAKARKSFQWVKR 209
           RKK G+AKAR+SFQ+ KR
Sbjct: 143 RKKYGRAKARRSFQFSKR 160

[Close]

BLAST of HG10008960 vs. ExPASy Swiss-Prot
Match: B2S535 (30S ribosomal protein S9 OS=Brucella abortus (strain S19) OX=430066 GN=rpsI PE=3 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 8.8e-36
Identity = 77/143 (53.85%), Postives = 101/143 (70.63%), Query Frame = 0


Query: 66  KQEEVAKARVRQVDDKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDSRAA 125
           K E  A   V+++D +GRAY TG+RK ++ARVW++PG GK  VNDKEF+ YF     +  
Sbjct: 16  KTEAAAPVHVQKLDAQGRAYATGKRKDAVARVWVKPGTGKITVNDKEFEKYFARPVLQMI 75

Query: 126 LLRPFSETKTLGLWDVKCTVKGGGTTGQVGAVQLGISRALQNWEPDLRPPLRASGFLTRD 185
           L +P   +   G +D+  TV GGG +GQ GAV+ GIS+AL ++EP LR  L+  GFLTRD
Sbjct: 76  LQQPIVASNRAGQFDIVATVAGGGLSGQAGAVRHGISKALTDYEPGLRTVLKKGGFLTRD 135

Query: 186 ARVVERKKPGKAKARKSFQWVKR 209
           +RVVERKK GKAKAR+SFQ+ KR
Sbjct: 136 SRVVERKKYGKAKARRSFQFSKR 158

[Close]

BLAST of HG10008960 vs. ExPASy TrEMBL
Match: A0A6J1I7H1 (28S ribosomal protein S9, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111471519 PE=3 SV=1)

HSP 1 Score: 396.0 bits (1016), Expect = 9.9e-107
Identity = 195/204 (95.59%), Postives = 201/204 (98.53%), Query Frame = 0


Query: 5   GPNRAFGDLIAASGITDDMLDSLIALKDLEGVEGLPPLRDIEDMRYEKNTRKSSRAEIER 64
           GPNRAFGDLIAASGITDDMLDSLIALKDLEGVEGLPPL  +EDMRYEKNTRKSSRAEIER
Sbjct: 194 GPNRAFGDLIAASGITDDMLDSLIALKDLEGVEGLPPLSVLEDMRYEKNTRKSSRAEIER 253

Query: 65  QKQEEVAKARVRQVDDKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDSRA 124
           QKQEEVAKARVRQ+DDKGRAYGTGRRKCSIARVW+QPGDGKF+VNDKEFDVYFPMLDSRA
Sbjct: 254 QKQEEVAKARVRQIDDKGRAYGTGRRKCSIARVWVQPGDGKFVVNDKEFDVYFPMLDSRA 313

Query: 125 ALLRPFSETKTLGLWDVKCTVKGGGTTGQVGAVQLGISRALQNWEPDLRPPLRASGFLTR 184
           ALLRPFSETKTLGLWDVKCTVKGGGTTGQVGA+QLGISRALQNWEPD RPPLRASGFLTR
Sbjct: 314 ALLRPFSETKTLGLWDVKCTVKGGGTTGQVGAIQLGISRALQNWEPDFRPPLRASGFLTR 373

Query: 185 DARVVERKKPGKAKARKSFQWVKR 209
           D+RVVERKKPGKAKARKSFQWVKR
Sbjct: 374 DSRVVERKKPGKAKARKSFQWVKR 397

[Close]

BLAST of HG10008960 vs. ExPASy TrEMBL
Match: A0A6J1E6E6 (28S ribosomal protein S9, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111430383 PE=3 SV=1)

HSP 1 Score: 396.0 bits (1016), Expect = 9.9e-107
Identity = 195/204 (95.59%), Postives = 201/204 (98.53%), Query Frame = 0


Query: 5   GPNRAFGDLIAASGITDDMLDSLIALKDLEGVEGLPPLRDIEDMRYEKNTRKSSRAEIER 64
           GPNRAFGDLIAASGITDDMLDSLIALKDLEGVEGLPPL  +EDMRYEKNTRKSSRAEIER
Sbjct: 194 GPNRAFGDLIAASGITDDMLDSLIALKDLEGVEGLPPLSVLEDMRYEKNTRKSSRAEIER 253

Query: 65  QKQEEVAKARVRQVDDKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDSRA 124
           QKQEEVAKARVRQ+DDKGRAYGTGRRKCSIARVW+QPGDGKF+VNDKEFDVYFPMLDSRA
Sbjct: 254 QKQEEVAKARVRQIDDKGRAYGTGRRKCSIARVWVQPGDGKFVVNDKEFDVYFPMLDSRA 313

Query: 125 ALLRPFSETKTLGLWDVKCTVKGGGTTGQVGAVQLGISRALQNWEPDLRPPLRASGFLTR 184
           ALLRPFSETKTLGLWDVKCTVKGGGTTGQVGA+QLGISRALQNWEPD RPPLRASGFLTR
Sbjct: 314 ALLRPFSETKTLGLWDVKCTVKGGGTTGQVGAIQLGISRALQNWEPDFRPPLRASGFLTR 373

Query: 185 DARVVERKKPGKAKARKSFQWVKR 209
           D+RVVERKKPGKAKARKSFQWVKR
Sbjct: 374 DSRVVERKKPGKAKARKSFQWVKR 397

[Close]

BLAST of HG10008960 vs. ExPASy TrEMBL
Match: A0A6J1DZS9 (28S ribosomal protein S9, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111026113 PE=3 SV=1)

HSP 1 Score: 394.4 bits (1012), Expect = 2.9e-106
Identity = 198/204 (97.06%), Postives = 200/204 (98.04%), Query Frame = 0


Query: 5   GPNRAFGDLIAASGITDDMLDSLIALKDLEGVEGLPPLRDIEDMRYEKNTRKSSRAEIER 64
           GPN  FGDLIAASGITDDMLDSLIALKDLEGVEGLPPL +IEDMRYEKNTRKSSRAEIER
Sbjct: 194 GPNCTFGDLIAASGITDDMLDSLIALKDLEGVEGLPPLTEIEDMRYEKNTRKSSRAEIER 253

Query: 65  QKQEEVAKARVRQVDDKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDSRA 124
           QKQEEVAKARVRQVDDKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDSRA
Sbjct: 254 QKQEEVAKARVRQVDDKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDSRA 313

Query: 125 ALLRPFSETKTLGLWDVKCTVKGGGTTGQVGAVQLGISRALQNWEPDLRPPLRASGFLTR 184
           ALLRPFSETKTLGLWDV CTVKGGGT+GQVGAVQLGISRALQNWEPDLRPPLRASGFLTR
Sbjct: 314 ALLRPFSETKTLGLWDVTCTVKGGGTSGQVGAVQLGISRALQNWEPDLRPPLRASGFLTR 373

Query: 185 DARVVERKKPGKAKARKSFQWVKR 209
           DARVVERKKPGKAKARKSFQWVKR
Sbjct: 374 DARVVERKKPGKAKARKSFQWVKR 397

[Close]

BLAST of HG10008960 vs. ExPASy TrEMBL
Match: A0A5A7TGT0 (28S ribosomal protein S9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001040 PE=3 SV=1)

HSP 1 Score: 393.3 bits (1009), Expect = 6.4e-106
Identity = 193/208 (92.79%), Postives = 203/208 (97.60%), Query Frame = 0


Query: 1   MSTAGPNRAFGDLIAASGITDDMLDSLIALKDLEGVEGLPPLRDIEDMRYEKNTRKSSRA 60
           M+TAGPNRAFGDLIAASGITDDM+DSL+ALKDLEG+EGLPPL +IEDMRYEKNTRKSSRA
Sbjct: 1   MATAGPNRAFGDLIAASGITDDMIDSLMALKDLEGIEGLPPLSEIEDMRYEKNTRKSSRA 60

Query: 61  EIERQKQEEVAKARVRQVDDKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPML 120
           EIERQKQEEVAKARVRQVDDKGRAYGTGRRKCSIARVWIQPG+GKFIVNDKEFDVYFPML
Sbjct: 61  EIERQKQEEVAKARVRQVDDKGRAYGTGRRKCSIARVWIQPGNGKFIVNDKEFDVYFPML 120

Query: 121 DSRAALLRPFSETKTLGLWDVKCTVKGGGTTGQVGAVQLGISRALQNWEPDLRPPLRASG 180
           DSRA LL+PF+ETKTLGLWDV CTVKGGGTTGQVGA+QLGISRALQNWEPD RPPLRA G
Sbjct: 121 DSRAVLLQPFAETKTLGLWDVSCTVKGGGTTGQVGAIQLGISRALQNWEPDFRPPLRACG 180

Query: 181 FLTRDARVVERKKPGKAKARKSFQWVKR 209
           FLTRD+RVVERKKPGKAKARKSFQWVKR
Sbjct: 181 FLTRDSRVVERKKPGKAKARKSFQWVKR 208

[Close]

BLAST of HG10008960 vs. ExPASy TrEMBL
Match: A0A1S3ATW2 (28S ribosomal protein S9, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103482908 PE=3 SV=1)

HSP 1 Score: 385.6 bits (989), Expect = 1.3e-103
Identity = 189/204 (92.65%), Postives = 199/204 (97.55%), Query Frame = 0


Query: 5   GPNRAFGDLIAASGITDDMLDSLIALKDLEGVEGLPPLRDIEDMRYEKNTRKSSRAEIER 64
           GP+RAFGDLIAASGITDDM+DSL+ALKDLEG+EGLPPL +IEDMRYEKNTRKSSRAEIER
Sbjct: 202 GPDRAFGDLIAASGITDDMIDSLMALKDLEGIEGLPPLSEIEDMRYEKNTRKSSRAEIER 261

Query: 65  QKQEEVAKARVRQVDDKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDSRA 124
           QKQEEVAKARVRQVDDKGRAYGTGRRKCSIARVWIQPG+GKFIVNDKEFDVYFPMLDSRA
Sbjct: 262 QKQEEVAKARVRQVDDKGRAYGTGRRKCSIARVWIQPGNGKFIVNDKEFDVYFPMLDSRA 321

Query: 125 ALLRPFSETKTLGLWDVKCTVKGGGTTGQVGAVQLGISRALQNWEPDLRPPLRASGFLTR 184
            LL+PF+ETKTLGLWDV CTVKGGGTTGQVGA+QLGISRALQNWEPD RPPLRA GFLTR
Sbjct: 322 VLLQPFAETKTLGLWDVSCTVKGGGTTGQVGAIQLGISRALQNWEPDFRPPLRACGFLTR 381

Query: 185 DARVVERKKPGKAKARKSFQWVKR 209
           D+RVVERKKPGKAKARKSFQWVKR
Sbjct: 382 DSRVVERKKPGKAKARKSFQWVKR 405

[Close]

BLAST of HG10008960 vs. TAIR 10
Match: AT3G49080.1 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 349.7 bits (896), Expect = 1.6e-96
Identity = 171/204 (83.82%), Postives = 191/204 (93.63%), Query Frame = 0


Query: 5   GPNRAFGDLIAASGITDDMLDSLIALKDLEGVEGLPPLRDIEDMRYEKNTRKSSRAEIER 64
           GP+RAFGDLIA SGITD+MLDSLIALKD +GVEGLPPL +IE++R EK+++KSSRAEIE 
Sbjct: 227 GPDRAFGDLIAKSGITDEMLDSLIALKDFQGVEGLPPLTEIENLRREKSSKKSSRAEIEL 286

Query: 65  QKQEEVAKARVRQVDDKGRAYGTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDSRA 124
           Q QE++AKARVRQVD+ GRAYGTGRRKCSIARVWIQPG+GKF VN+KEFDVYFPMLD RA
Sbjct: 287 QMQEDIAKARVRQVDETGRAYGTGRRKCSIARVWIQPGEGKFQVNEKEFDVYFPMLDHRA 346

Query: 125 ALLRPFSETKTLGLWDVKCTVKGGGTTGQVGAVQLGISRALQNWEPDLRPPLRASGFLTR 184
           ALLRP +ETKTLG WD+KCTVKGGGTTGQVGA+QLGISRALQNWEPD+R  LRA+GFLTR
Sbjct: 347 ALLRPLAETKTLGRWDIKCTVKGGGTTGQVGAIQLGISRALQNWEPDMRTSLRAAGFLTR 406

Query: 185 DARVVERKKPGKAKARKSFQWVKR 209
           D+RVVERKKPGKAKARKSFQWVKR
Sbjct: 407 DSRVVERKKPGKAKARKSFQWVKR 430

[Close]

BLAST of HG10008960 vs. TAIR 10
Match: AT1G74970.1 (ribosomal protein S9 )

HSP 1 Score: 96.7 bits (239), Expect = 2.4e-20
Identity = 60/127 (47.24%), Postives = 75/127 (59.06%), Query Frame = 0


Query: 86  GTGRRKCSIARVWIQPGDGKFIVNDKEFDVYFPMLDSRAALLRPFS-ETKTLGL---WDV 145
           GTGRRKC+IARV +Q G GK I+N ++   Y   L      L+       TLG    +D+
Sbjct: 85  GTGRRKCAIARVVLQEGTGKVIINYRDAKEY---LQGNPLWLQYVKVPLVTLGYENSYDI 144

Query: 146 KCTVKGGGTTGQVGAVQLGISRALQNWEPDLRPPLRASGFLTRDARVVERKKPGKAKARK 205
                GGG +GQ  A+ LG++RAL     D R PL+  G LTRDARVVERKK G  KARK
Sbjct: 145 FVKAHGGGLSGQAQAITLGVARALLKVSADHRSPLKKEGLLTRDARVVERKKAGLKKARK 204

Query: 206 SFQWVKR 209
           + Q+ KR
Sbjct: 205 APQFSKR 208

The following BLAST results are available for this feature:

BLAST of HG10008960 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038874636.1	2.9e-108	98.04	30S ribosomal protein S9, mitochondrial isoform X1 [Benincasa hispida]	[more]
KAG6579377.1	2.0e-106	95.59	30S ribosomal protein S9, mitochondrial, partial [Cucurbita argyrosperma subsp. ...	[more]
XP_023550446.1	2.0e-106	95.59	28S ribosomal protein S9, mitochondrial [Cucurbita pepo subsp. pepo]	[more]
XP_022972996.1	2.0e-106	95.59	28S ribosomal protein S9, mitochondrial [Cucurbita maxima]	[more]
XP_022922373.1	2.0e-106	95.59	28S ribosomal protein S9, mitochondrial [Cucurbita moschata]	[more]

BLAST of HG10008960 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L6Z4	2.2e-95	83.82	30S ribosomal protein S9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS9M...	[more]
A8I7Z9	6.1e-37	55.80	30S ribosomal protein S9 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 59...	[more]
A9IVX6	1.4e-36	54.17	30S ribosomal protein S9 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) ...	[more]
A7INH2	1.8e-36	53.62	30S ribosomal protein S9 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / P...	[more]
B2S535	8.8e-36	53.85	30S ribosomal protein S9 OS=Brucella abortus (strain S19) OX=430066 GN=rpsI PE=3...	[more]

BLAST of HG10008960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I7H1	9.9e-107	95.59	28S ribosomal protein S9, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111471...	[more]
A0A6J1E6E6	9.9e-107	95.59	28S ribosomal protein S9, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1DZS9	2.9e-106	97.06	28S ribosomal protein S9, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A5A7TGT0	6.4e-106	92.79	28S ribosomal protein S9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3ATW2	1.3e-103	92.65	28S ribosomal protein S9, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103482908 ...	[more]

BLAST of HG10008960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49080.1	1.6e-96	83.82	Ribosomal protein S5 domain 2-like superfamily protein	[more]
AT1G74970.1	2.4e-20	47.24	ribosomal protein S9	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014721	Ribosomal protein S5 domain 2-type fold, subgroup	GENE3D	3.30.230.10		coord: 76..208 e-value: 2.5E-51 score: 175.3
IPR000754	Ribosomal protein S9	PFAM	PF00380	Ribosomal_S9	coord: 88..208 e-value: 2.0E-48 score: 163.9
IPR000754	Ribosomal protein S9	PANTHER	PTHR21569	RIBOSOMAL PROTEIN S9	coord: 4..208
None	No IPR available	PANTHER	PTHR21569:SF1	28S RIBOSOMAL PROTEIN S9, MITOCHONDRIAL	coord: 4..208
IPR020574	Ribosomal protein S9, conserved site	PROSITE	PS00360	RIBOSOMAL_S9	coord: 147..165
IPR023035	Ribosomal protein S9, bacterial/plastid	HAMAP	MF_00532_B	Ribosomal_S9_B	coord: 79..208 score: 28.608652
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 83..208

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10008960.1	HG10008960.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005763	mitochondrial small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome