HG10008953 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10008953
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	RRM domain-containing protein
Location	Chr06: 1024675 .. 1025352 (+)
RNA-Seq Expression	HG10008953
Synteny	HG10008953

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATTACTGCCTCAGGATTCAAATGGTTTTGTTGATGAGAAGTGTGAAAGCAAACTTTATATTGGTAATCTTGACCTCAGAATTACGGAGTAAGGAAAATTACTGCCCAGCATCTGCAATGTATTTGTCTTCCAGTTTTCCCTCTACTATATTGAAGTTTAAATTAACTTGTTTCAGAGCGGCTCTCATTAAACTGTTCTCTCCTTTTGGGAAGATAATATCTGAGGATTTCTTGTGGCACACTCGTGGGCCAAAGCGTGGAGAGCCACGAGGATTTGCCTTCATTGAATACAGCTCCAAGGAGGTAAGTTGCTTGGTTTACCCCTTAATATAGCCCCTGTCAAGGAACTCCTTATTATTGCTTGTAAAGTGAGTATGCAGGAAGCTAAATTGGCTAAAGAGAAGATGCATGGAAAATTAGCTTGCGGTCGTCCGTTGGTTGTCCGCCTTGCCAGTGAAAAGTTCATGACCAATGCAACAAATGATACTTCAAGAGCAGCAGGCGAGTCGAGCAAATTGAGACTCGGTGGCAGCAGTTACGGACAGTTGACTCGCAGCGATAAGATTGCTGCCATAAAGAATAAATTGAGAGCTTTGGAAGGAGGTGGGGAGAGCTCTAGCCTGAAAAAACAGAAGCAAGATAATGTTGATAAGTCATCGCTCAAGACATCCTGA

mRNA sequence

ATGGAATTACTGCCTCAGGATTCAAATGGTTTTGTTGATGAGAAGTGTGAAAGCAAACTTTATATTGGTAATCTTGACCTCAGAATTACGGAAGCGGCTCTCATTAAACTGTTCTCTCCTTTTGGGAAGATAATATCTGAGGATTTCTTGTGGCACACTCGTGGGCCAAAGCGTGGAGAGCCACGAGGATTTGCCTTCATTGAATACAGCTCCAAGGAGGAAGCTAAATTGGCTAAAGAGAAGATGCATGGAAAATTAGCTTGCGGTCGTCCGTTGGTTGTCCGCCTTGCCAGTGAAAAGTTCATGACCAATGCAACAAATGATACTTCAAGAGCAGCAGGCGAGTCGAGCAAATTGAGACTCGGTGGCAGCAGTTACGGACAGTTGACTCGCAGCGATAAGATTGCTGCCATAAAGAATAAATTGAGAGCTTTGGAAGGAGGTGGGGAGAGCTCTAGCCTGAAAAAACAGAAGCAAGATAATGTTGATAAGTCATCGCTCAAGACATCCTGA

Coding sequence (CDS)

ATGGAATTACTGCCTCAGGATTCAAATGGTTTTGTTGATGAGAAGTGTGAAAGCAAACTTTATATTGGTAATCTTGACCTCAGAATTACGGAAGCGGCTCTCATTAAACTGTTCTCTCCTTTTGGGAAGATAATATCTGAGGATTTCTTGTGGCACACTCGTGGGCCAAAGCGTGGAGAGCCACGAGGATTTGCCTTCATTGAATACAGCTCCAAGGAGGAAGCTAAATTGGCTAAAGAGAAGATGCATGGAAAATTAGCTTGCGGTCGTCCGTTGGTTGTCCGCCTTGCCAGTGAAAAGTTCATGACCAATGCAACAAATGATACTTCAAGAGCAGCAGGCGAGTCGAGCAAATTGAGACTCGGTGGCAGCAGTTACGGACAGTTGACTCGCAGCGATAAGATTGCTGCCATAAAGAATAAATTGAGAGCTTTGGAAGGAGGTGGGGAGAGCTCTAGCCTGAAAAAACAGAAGCAAGATAATGTTGATAAGTCATCGCTCAAGACATCCTGA

Protein sequence

MELLPQDSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKFMTNATNDTSRAAGESSKLRLGGSSYGQLTRSDKIAAIKNKLRALEGGGESSSLKKQKQDNVDKSSLKTS

Homology

[Close]

BLAST of HG10008953 vs. NCBI nr
Match: XP_011654647.1 (probable RNA-binding protein 18 isoform X2 [Cucumis sativus] >KAE8647815.1 hypothetical protein Csa_000614 [Cucumis sativus])

HSP 1 Score: 295.0 bits (754), Expect = 4.0e-76
Identity = 154/170 (90.59%), Postives = 156/170 (91.76%), Query Frame = 0


Query: 7   DSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAF 66
           DSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAF
Sbjct: 2   DSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAF 61

Query: 67  IEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKFMTNATNDTSRAAGESSKLRLGGSSY 126
           IEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEK MTN TNDTSR A ES K RLGGSSY
Sbjct: 62  IEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKLMTNTTNDTSRTASESRKSRLGGSSY 121

Query: 127 GQLTRSDKIAAIKNKLRALEGGGESSSLKKQKQDNV------DKSSLKTS 171
           GQLTRSDKIAAIKNKLRALEGGGESSS+KK KQDN+      DKSSLK S
Sbjct: 122 GQLTRSDKIAAIKNKLRALEGGGESSSVKKPKQDNISYKDHNDKSSLKPS 171

[Close]

BLAST of HG10008953 vs. NCBI nr
Match: KAA0042597.1 (putative RNA-binding protein 18 [Cucumis melo var. makuwa])

HSP 1 Score: 292.4 bits (747), Expect = 2.6e-75
Identity = 152/171 (88.89%), Postives = 156/171 (91.23%), Query Frame = 0


Query: 6   QDSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFA 65
           +DSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFA
Sbjct: 33  EDSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFA 92

Query: 66  FIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKFMTNATNDTSRAAGESSKLRLGGSS 125
           FIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEK M N  NDTS+AA ES K RLGGSS
Sbjct: 93  FIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSS 152

Query: 126 YGQLTRSDKIAAIKNKLRALEGGGESSSLKKQKQDN------VDKSSLKTS 171
           YGQLTRSDKIAAIKNKLRALEGGGESSS+KK KQDN      +DKS LKTS
Sbjct: 153 YGQLTRSDKIAAIKNKLRALEGGGESSSVKKPKQDNISFKDHIDKSFLKTS 203

[Close]

BLAST of HG10008953 vs. NCBI nr
Match: XP_038875193.1 (probable RNA-binding protein 18 [Benincasa hispida] >XP_038875194.1 probable RNA-binding protein 18 [Benincasa hispida] >XP_038875195.1 probable RNA-binding protein 18 [Benincasa hispida] >XP_038875196.1 probable RNA-binding protein 18 [Benincasa hispida] >XP_038875197.1 probable RNA-binding protein 18 [Benincasa hispida] >XP_038875198.1 probable RNA-binding protein 18 [Benincasa hispida] >XP_038875199.1 probable RNA-binding protein 18 [Benincasa hispida])

HSP 1 Score: 292.0 bits (746), Expect = 3.4e-75
Identity = 146/156 (93.59%), Postives = 153/156 (98.08%), Query Frame = 0


Query: 7   DSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAF 66
           DSNGFVDEKCESKLYIGNLDLRITEAALIKLFSP+GKIISEDFLWHTRGPKRGEPRGFAF
Sbjct: 4   DSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPYGKIISEDFLWHTRGPKRGEPRGFAF 63

Query: 67  IEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKFMTNATNDTSRAAGESSKLRLGGSSY 126
           IEYSSKEEAKLAKEKMHGKLACGRPLVVRLASE+F+TN TNDTSRAAGESSK RLGGS+Y
Sbjct: 64  IEYSSKEEAKLAKEKMHGKLACGRPLVVRLASERFITNTTNDTSRAAGESSKSRLGGSNY 123

Query: 127 GQLTRSDKIAAIKNKLRALEGGGESSSLKKQKQDNV 163
            Q+TRSDKIAAIKNKLRALEGGGESSS+KKQKQDN+
Sbjct: 124 RQMTRSDKIAAIKNKLRALEGGGESSSVKKQKQDNM 159

[Close]

BLAST of HG10008953 vs. NCBI nr
Match: XP_008437528.1 (PREDICTED: probable RNA-binding protein 18 [Cucumis melo])

HSP 1 Score: 291.6 bits (745), Expect = 4.4e-75
Identity = 152/170 (89.41%), Postives = 155/170 (91.18%), Query Frame = 0


Query: 7   DSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAF 66
           DSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAF
Sbjct: 2   DSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAF 61

Query: 67  IEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKFMTNATNDTSRAAGESSKLRLGGSSY 126
           IEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEK M N  NDTS+AA ES K RLGGSSY
Sbjct: 62  IEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSSY 121

Query: 127 GQLTRSDKIAAIKNKLRALEGGGESSSLKKQKQDN------VDKSSLKTS 171
           GQLTRSDKIAAIKNKLRALEGGGESSS+KK KQDN      +DKS LKTS
Sbjct: 122 GQLTRSDKIAAIKNKLRALEGGGESSSVKKPKQDNISFKDHIDKSFLKTS 171

[Close]

BLAST of HG10008953 vs. NCBI nr
Match: XP_031741097.1 (probable RNA-binding protein 18 isoform X1 [Cucumis sativus])

HSP 1 Score: 281.2 bits (718), Expect = 6.0e-72
Identity = 154/195 (78.97%), Postives = 156/195 (80.00%), Query Frame = 0


Query: 7   DSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAF 66
           DSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAF
Sbjct: 2   DSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAF 61

Query: 67  IEYSSKE-------------------------EAKLAKEKMHGKLACGRPLVVRLASEKF 126
           IEYSSKE                         EAKLAKEKMHGKLACGRPLVVRLASEK 
Sbjct: 62  IEYSSKEVSCLVYSLIASVKQLLIFACKVSMQEAKLAKEKMHGKLACGRPLVVRLASEKL 121

Query: 127 MTNATNDTSRAAGESSKLRLGGSSYGQLTRSDKIAAIKNKLRALEGGGESSSLKKQKQDN 171
           MTN TNDTSR A ES K RLGGSSYGQLTRSDKIAAIKNKLRALEGGGESSS+KK KQDN
Sbjct: 122 MTNTTNDTSRTASESRKSRLGGSSYGQLTRSDKIAAIKNKLRALEGGGESSSVKKPKQDN 181

[Close]

BLAST of HG10008953 vs. ExPASy Swiss-Prot
Match: Q6PBM8 (Probable RNA-binding protein 18 OS=Danio rerio OX=7955 GN=rbm18 PE=2 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 8.3e-16
Identity = 48/128 (37.50%), Postives = 73/128 (57.03%), Query Frame = 0


Query: 19  KLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLA 78
           +L+IGN+D +ITE  L+KL   FGK+   DFL+H  GP  G+PRG+ F+ + +KEEA+ A
Sbjct: 24  RLWIGNIDPKITEYHLVKLLEKFGKVKQFDFLFHKSGPLEGQPRGYCFVNFHTKEEAERA 83

Query: 79  KEKMHGKLACGRPLVVRLASEKFMTNATNDTSRAAGESSKLRLGGSSYGQLTRSDKIAAI 138
            + ++GKLA  + LVVR A  +       + +  A               L+ + KI AI
Sbjct: 84  IQCLNGKLALSKKLVVRWAHAQRFEPFRGEKNMPASLEPSSSEAEDLPTSLSVNAKIRAI 143

Query: 139 KNKLRALE 147
           + KL+ +E
Sbjct: 144 EAKLQMME 151

[Close]

BLAST of HG10008953 vs. ExPASy Swiss-Prot
Match: Q96H35 (Probable RNA-binding protein 18 OS=Homo sapiens OX=9606 GN=RBM18 PE=2 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 9.1e-15
Identity = 50/132 (37.88%), Postives = 76/132 (57.58%), Query Frame = 0


Query: 19  KLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLA 78
           +L+IGNLD +ITE  L+KL   FGK+   DFL+H  G   G+PRG+ F+ + +K+EA+ A
Sbjct: 26  RLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEQA 85

Query: 79  KEKMHGKLACGRPLVVRLASEKFMTNATNDTSRAAGESSKLRLGGSSYGQLTRSD----- 138
            + ++GKLA  + LVVR A  +      N   +       + L  SS  + T+S+     
Sbjct: 86  IQCLNGKLALSKKLVVRWAHAQVKRYDHNKNDKIL----PISLEPSSSTEPTQSNLSVTA 145

Query: 139 KIAAIKNKLRAL 146
           KI AI+ KL+ +
Sbjct: 146 KIKAIEAKLKMM 153

[Close]

BLAST of HG10008953 vs. ExPASy Swiss-Prot
Match: Q5R6W3 (Probable RNA-binding protein 18 OS=Pongo abelii OX=9601 GN=RBM18 PE=2 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 9.1e-15
Identity = 50/132 (37.88%), Postives = 76/132 (57.58%), Query Frame = 0


Query: 19  KLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLA 78
           +L+IGNLD +ITE  L+KL   FGK+   DFL+H  G   G+PRG+ F+ + +K+EA+ A
Sbjct: 26  RLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEQA 85

Query: 79  KEKMHGKLACGRPLVVRLASEKFMTNATNDTSRAAGESSKLRLGGSSYGQLTRSD----- 138
            + ++GKLA  + LVVR A  +      N   +       + L  SS  + T+S+     
Sbjct: 86  IQCLNGKLALSKKLVVRWAHAQVKRYDHNKNDKIL----PISLEPSSSTEPTQSNLSVTA 145

Query: 139 KIAAIKNKLRAL 146
           KI AI+ KL+ +
Sbjct: 146 KIKAIEAKLKMM 153

[Close]

BLAST of HG10008953 vs. ExPASy Swiss-Prot
Match: Q9CR83 (Probable RNA-binding protein 18 OS=Mus musculus OX=10090 GN=Rbm18 PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.5e-14
Identity = 47/128 (36.72%), Postives = 73/128 (57.03%), Query Frame = 0


Query: 19  KLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLA 78
           +L+IGNLD +ITE  L+KL   FGK+   DFL+H  G   G+PRG+ F+ + +K+EA+ A
Sbjct: 26  RLWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEQA 85

Query: 79  KEKMHGKLACGRPLVVRLASEKFMTNATNDTSRAAGESSKLRLGGS-SYGQLTRSDKIAA 138
            + ++GKLA  + LVVR A  +      N   +    S +       +   L+ + KI A
Sbjct: 86  IQCLNGKLALSKKLVVRWAHAQVKRYDHNKNDKILPISLEPSSSTEPAQSNLSVTAKIKA 145

Query: 139 IKNKLRAL 146
           I+ KL+ +
Sbjct: 146 IEAKLKMM 153

[Close]

BLAST of HG10008953 vs. ExPASy Swiss-Prot
Match: Q66J99 (Probable RNA-binding protein 18 OS=Xenopus laevis OX=8355 GN=rbm18 PE=2 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.9e-13
Identity = 60/168 (35.71%), Postives = 90/168 (53.57%), Query Frame = 0


Query: 19  KLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLA 78
           +L+IGN+D +ITE  L+KL   FGK+   DFL+H  GP  G+PRG+ F+ + +K EA+ A
Sbjct: 26  RLWIGNVDPKITEYHLLKLLQKFGKVKQFDFLFHKSGPLEGQPRGYCFVNFETKAEAERA 85

Query: 79  KEKMHGKLACGRPLVVRLASE--KFMTNATND----TSRAAGESSKLRLGGSSYGQLTRS 138
              ++GK+A  + LVVR A    K   N  N+     S     S++      +   L+ S
Sbjct: 86  IHCLNGKMALSKKLVVRWAHAQIKRYDNCKNEKVLPISLEPSSSTE-----PTQSTLSVS 145

Query: 139 DKIAAIKNKLRALEGG------GESS-----SLKKQKQDNVDKSSLKT 170
            KI AI+ KL+ +         G+SS     + +K+K     KSSLK+
Sbjct: 146 AKIKAIEAKLKMMAENPDPLLPGQSSYSYFKANEKKKCTPYHKSSLKS 188

[Close]

BLAST of HG10008953 vs. ExPASy TrEMBL
Match: A0A0A0KJM9 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G140500 PE=4 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 1.1e-76
Identity = 154/171 (90.06%), Postives = 157/171 (91.81%), Query Frame = 0


Query: 6   QDSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFA 65
           +DSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFA
Sbjct: 33  EDSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFA 92

Query: 66  FIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKFMTNATNDTSRAAGESSKLRLGGSS 125
           FIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEK MTN TNDTSR A ES K RLGGSS
Sbjct: 93  FIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKLMTNTTNDTSRTASESRKSRLGGSS 152

Query: 126 YGQLTRSDKIAAIKNKLRALEGGGESSSLKKQKQDNV------DKSSLKTS 171
           YGQLTRSDKIAAIKNKLRALEGGGESSS+KK KQDN+      DKSSLK S
Sbjct: 153 YGQLTRSDKIAAIKNKLRALEGGGESSSVKKPKQDNISYKDHNDKSSLKPS 203

[Close]

BLAST of HG10008953 vs. ExPASy TrEMBL
Match: A0A5A7TLJ6 (Putative RNA-binding protein 18 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G00930 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.3e-75
Identity = 152/171 (88.89%), Postives = 156/171 (91.23%), Query Frame = 0


Query: 6   QDSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFA 65
           +DSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFA
Sbjct: 33  EDSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFA 92

Query: 66  FIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKFMTNATNDTSRAAGESSKLRLGGSS 125
           FIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEK M N  NDTS+AA ES K RLGGSS
Sbjct: 93  FIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSS 152

Query: 126 YGQLTRSDKIAAIKNKLRALEGGGESSSLKKQKQDN------VDKSSLKTS 171
           YGQLTRSDKIAAIKNKLRALEGGGESSS+KK KQDN      +DKS LKTS
Sbjct: 153 YGQLTRSDKIAAIKNKLRALEGGGESSSVKKPKQDNISFKDHIDKSFLKTS 203

[Close]

BLAST of HG10008953 vs. ExPASy TrEMBL
Match: A0A1S3ATX2 (probable RNA-binding protein 18 OS=Cucumis melo OX=3656 GN=LOC103482914 PE=4 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 2.1e-75
Identity = 152/170 (89.41%), Postives = 155/170 (91.18%), Query Frame = 0


Query: 7   DSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAF 66
           DSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAF
Sbjct: 2   DSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAF 61

Query: 67  IEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKFMTNATNDTSRAAGESSKLRLGGSSY 126
           IEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEK M N  NDTS+AA ES K RLGGSSY
Sbjct: 62  IEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKLMVNTANDTSKAASESRKSRLGGSSY 121

Query: 127 GQLTRSDKIAAIKNKLRALEGGGESSSLKKQKQDN------VDKSSLKTS 171
           GQLTRSDKIAAIKNKLRALEGGGESSS+KK KQDN      +DKS LKTS
Sbjct: 122 GQLTRSDKIAAIKNKLRALEGGGESSSVKKPKQDNISFKDHIDKSFLKTS 171

[Close]

BLAST of HG10008953 vs. ExPASy TrEMBL
Match: A0A6J1DUC5 (probable RNA-binding protein 18 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111024416 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.8e-69
Identity = 139/162 (85.80%), Postives = 148/162 (91.36%), Query Frame = 0


Query: 3   LLPQDSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPR 62
           L+  DS+GFVDEKCESKLYIGNLDLRITEA LIK+FSPFGKIISEDFLWHTRGPKRGEPR
Sbjct: 49  LMVMDSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPR 108

Query: 63  GFAFIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKFMTNATNDTSRAAGESSKLRLG 122
           GFAFIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEK M + T   SRAAGESSK RLG
Sbjct: 109 GFAFIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKCMIDTTKSISRAAGESSKSRLG 168

Query: 123 GSSYGQLTRSDKIAAIKNKLRALEGGGESSS--LKKQKQDNV 163
           GS+YGQ+TR+DKIAAIKNKLRALEG  ESSS  +KKQKQDN+
Sbjct: 169 GSNYGQMTRTDKIAAIKNKLRALEGEAESSSSRVKKQKQDNI 210

[Close]

BLAST of HG10008953 vs. ExPASy TrEMBL
Match: A0A6J1DXL8 (probable RNA-binding protein 18 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111024416 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 6.7e-69
Identity = 138/159 (86.79%), Postives = 147/159 (92.45%), Query Frame = 0


Query: 6   QDSNGFVDEKCESKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFA 65
           +DS+GFVDEKCESKLYIGNLDLRITEA LIK+FSPFGKIISEDFLWHTRGPKRGEPRGFA
Sbjct: 21  KDSSGFVDEKCESKLYIGNLDLRITEATLIKMFSPFGKIISEDFLWHTRGPKRGEPRGFA 80

Query: 66  FIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKFMTNATNDTSRAAGESSKLRLGGSS 125
           FIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEK M + T   SRAAGESSK RLGGS+
Sbjct: 81  FIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASEKCMIDTTKSISRAAGESSKSRLGGSN 140

Query: 126 YGQLTRSDKIAAIKNKLRALEGGGESSS--LKKQKQDNV 163
           YGQ+TR+DKIAAIKNKLRALEG  ESSS  +KKQKQDN+
Sbjct: 141 YGQMTRTDKIAAIKNKLRALEGEAESSSSRVKKQKQDNI 179

[Close]

BLAST of HG10008953 vs. TAIR 10
Match: AT5G52545.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; Has 16 Blast hits to 16 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 72.8 bits (177), Expect = 3.0e-13
Identity = 44/79 (55.70%), Postives = 59/79 (74.68%), Query Frame = 0


Query: 82  MHGKLACGRPLVVRLASEKFMTNATNDTS-RAAGESSKLR-LGGSSYGQLTRSDKIAAIK 141
           MHG+LACGRPLVVRLASEK + ++++D S R+  E ++ R + GSS GQ++R +K+ AIK
Sbjct: 1   MHGRLACGRPLVVRLASEKHLEDSSHDHSKRSLPEGNRTRFVNGSSSGQMSRDEKVTAIK 60

Query: 142 NKLRALEGGGESSSLKKQK 159
           NKL+ALE   E    KKQK
Sbjct: 61  NKLKALE-EDEKRDPKKQK 78

[Close]

BLAST of HG10008953 vs. TAIR 10
Match: AT3G16380.1 (poly(A) binding protein 6 )

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-09
Identity = 31/83 (37.35%), Postives = 50/83 (60.24%), Query Frame = 0


Query: 18  SKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKL 77
           S LY+ NL   + E  L ++F  +G+I+S   + H    + G  +GF F+ +S+ EE+K 
Sbjct: 304 SNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCH----ENGRSKGFGFVCFSNCEESKQ 363

Query: 78  AKEKMHGKLACGRPLVVRLASEK 101
           AK  ++G L  G+P+VVR+A  K
Sbjct: 364 AKRYLNGFLVDGKPIVVRVAERK 382

[Close]

BLAST of HG10008953 vs. TAIR 10
Match: AT1G71770.1 (poly(A)-binding protein 5 )

HSP 1 Score: 60.5 bits (145), Expect = 1.6e-09
Identity = 32/83 (38.55%), Postives = 50/83 (60.24%), Query Frame = 0


Query: 18  SKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKL 77
           S LY+ NLD  + +  L ++FS +G + S   + +++G      RGF F+ YS+ EEA L
Sbjct: 342 SNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLS----RGFGFVAYSNPEEALL 401

Query: 78  AKEKMHGKLACGRPLVVRLASEK 101
           A ++M+GK+   +PL V LA  K
Sbjct: 402 AMKEMNGKMIGRKPLYVALAQRK 420

[Close]

BLAST of HG10008953 vs. TAIR 10
Match: AT1G71770.2 (poly(A)-binding protein 5 )

HSP 1 Score: 60.5 bits (145), Expect = 1.6e-09
Identity = 32/83 (38.55%), Postives = 50/83 (60.24%), Query Frame = 0


Query: 18  SKLYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKL 77
           S LY+ NLD  + +  L ++FS +G + S   + +++G      RGF F+ YS+ EEA L
Sbjct: 342 SNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLS----RGFGFVAYSNPEEALL 401

Query: 78  AKEKMHGKLACGRPLVVRLASEK 101
           A ++M+GK+   +PL V LA  K
Sbjct: 402 AMKEMNGKMIGRKPLYVALAQRK 420

[Close]

BLAST of HG10008953 vs. TAIR 10
Match: AT5G03580.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 56.6 bits (135), Expect = 2.2e-08
Identity = 34/82 (41.46%), Postives = 47/82 (57.32%), Query Frame = 0


Query: 18 SKLYIGNLDLRITEAALIKLFSPFGKII----SEDFLWHTRGPKRGEPRGFAFIEYSSKE 77
          + LYI NLD +++E  L  +FS FGK+I    ++DF        RGE RGFAFIE+ S +
Sbjct: 17 TSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDF--------RGESRGFAFIEFESAD 76

Query: 78 EAKLAKEKMHGKLACGRPLVVR 96
           A  A   M G+L   + L V+
Sbjct: 77 SAGRAMLHMDGRLIGQKILCVQ 90

The following BLAST results are available for this feature:

BLAST of HG10008953 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011654647.1	4.0e-76	90.59	probable RNA-binding protein 18 isoform X2 [Cucumis sativus] >KAE8647815.1 hypot...	[more]
KAA0042597.1	2.6e-75	88.89	putative RNA-binding protein 18 [Cucumis melo var. makuwa]	[more]
XP_038875193.1	3.4e-75	93.59	probable RNA-binding protein 18 [Benincasa hispida] >XP_038875194.1 probable RNA...	[more]
XP_008437528.1	4.4e-75	89.41	PREDICTED: probable RNA-binding protein 18 [Cucumis melo]	[more]
XP_031741097.1	6.0e-72	78.97	probable RNA-binding protein 18 isoform X1 [Cucumis sativus]	[more]

BLAST of HG10008953 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6PBM8	8.3e-16	37.50	Probable RNA-binding protein 18 OS=Danio rerio OX=7955 GN=rbm18 PE=2 SV=1	[more]
Q96H35	9.1e-15	37.88	Probable RNA-binding protein 18 OS=Homo sapiens OX=9606 GN=RBM18 PE=2 SV=1	[more]
Q5R6W3	9.1e-15	37.88	Probable RNA-binding protein 18 OS=Pongo abelii OX=9601 GN=RBM18 PE=2 SV=1	[more]
Q9CR83	3.5e-14	36.72	Probable RNA-binding protein 18 OS=Mus musculus OX=10090 GN=Rbm18 PE=2 SV=1	[more]
Q66J99	2.9e-13	35.71	Probable RNA-binding protein 18 OS=Xenopus laevis OX=8355 GN=rbm18 PE=2 SV=1	[more]

BLAST of HG10008953 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJM9	1.1e-76	90.06	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G140500 PE=4 SV...	[more]
A0A5A7TLJ6	1.3e-75	88.89	Putative RNA-binding protein 18 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A1S3ATX2	2.1e-75	89.41	probable RNA-binding protein 18 OS=Cucumis melo OX=3656 GN=LOC103482914 PE=4 SV=...	[more]
A0A6J1DUC5	1.8e-69	85.80	probable RNA-binding protein 18 isoform X1 OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1DXL8	6.7e-69	86.79	probable RNA-binding protein 18 isoform X2 OS=Momordica charantia OX=3673 GN=LOC...	[more]

BLAST of HG10008953 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G52545.1	3.0e-13	55.70	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G16380.1	1.2e-09	37.35	poly(A) binding protein 6	[more]
AT1G71770.1	1.6e-09	38.55	poly(A)-binding protein 5	[more]
AT1G71770.2	1.6e-09	38.55	poly(A)-binding protein 5	[more]
AT5G03580.1	2.2e-08	41.46	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 19..95 e-value: 2.8E-20 score: 83.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 20..92 e-value: 1.7E-14 score: 53.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 18..99 score: 16.858295
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 15..110 e-value: 1.6E-22 score: 81.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..126
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 146..170
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 156..170
None	No IPR available	PANTHER	PTHR21245	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN	coord: 13..161
None	No IPR available	PANTHER	PTHR21245:SF2	RNA-BINDING PROTEIN 18-RELATED	coord: 13..161
IPR039157	RNA-binding protein 18, RNA recognition motif	CDD	cd12355	RRM_RBM18	coord: 19..98 e-value: 3.31305E-31 score: 105.821
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 12..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10008953.1	HG10008953.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding