HG10008940 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10008940
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	RNA-binding protein pno1-like
Location	Chr06: 914992 .. 915666 (-)
RNA-Seq Expression	HG10008940
Synteny	HG10008940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGTCTACTGAAGTCCCCATTTCCATGGAAGTGGAGGTAGTTTCAAGTAAAACGGCAACTGAAGTTGGCACCTTGCCACCAAAACCACAGTTTGACCCTCTAAAGCCTCATGAGATGAATGATGGCCGAGTTCAGTTCCGAAAGGTATCTGTTCCTCCACATCGATATTCCCCTCTCAAGAAAGCATGGATGGAGATCTACACCCCGATATATGATCAGATGAAAATCGACATCCGTATGAACCTCAAGGCTCGTAAAGTTGAACTGAAAACAAGAGCAGACACACCTGACATCAGTAACTTGCAAAAGAGTGCAGATTTTGTTCACGCCTTCATGCTCGGTTTTGATGTAATTGATGCCATTGCACTCTTACGAGTGGATGAACTCTATGTAGAATCCTTTGAGATCAAAGATGTTAAGACGCTTCGAGGCGAGCATTTGTCCCGTGCTATAGGCAGATTGTCTGGTAAAGCTGGTAAAACGAAGTTCGCCATTGAAAATGCTACAAAGACAAGGATAGTTATTGCAGACACCAAGATCCACATATTAGGATCCTTCGCCAACATCAAGATTGCTAGAGATTCTCTTTGCAGCCTCATTTTAGGTTCTCCAGCTGGAAAAGTTTATTCAAAACTAAGAGCAGTTACAGCCAGATTGGCAGAAAGGTTTTGA

mRNA sequence

ATGCAGTCTACTGAAGTCCCCATTTCCATGGAAGTGGAGGTAGTTTCAAGTAAAACGGCAACTGAAGTTGGCACCTTGCCACCAAAACCACAGTTTGACCCTCTAAAGCCTCATGAGATGAATGATGGCCGAGTTCAGTTCCGAAAGGTATCTGTTCCTCCACATCGATATTCCCCTCTCAAGAAAGCATGGATGGAGATCTACACCCCGATATATGATCAGATGAAAATCGACATCCGTATGAACCTCAAGGCTCGTAAAGTTGAACTGAAAACAAGAGCAGACACACCTGACATCAGTAACTTGCAAAAGAGTGCAGATTTTGTTCACGCCTTCATGCTCGGTTTTGATGTAATTGATGCCATTGCACTCTTACGAGTGGATGAACTCTATGTAGAATCCTTTGAGATCAAAGATGTTAAGACGCTTCGAGGCGAGCATTTGTCCCGTGCTATAGGCAGATTGTCTGGTAAAGCTGGTAAAACGAAGTTCGCCATTGAAAATGCTACAAAGACAAGGATAGTTATTGCAGACACCAAGATCCACATATTAGGATCCTTCGCCAACATCAAGATTGCTAGAGATTCTCTTTGCAGCCTCATTTTAGGTTCTCCAGCTGGAAAAGTTTATTCAAAACTAAGAGCAGTTACAGCCAGATTGGCAGAAAGGTTTTGA

Coding sequence (CDS)

ATGCAGTCTACTGAAGTCCCCATTTCCATGGAAGTGGAGGTAGTTTCAAGTAAAACGGCAACTGAAGTTGGCACCTTGCCACCAAAACCACAGTTTGACCCTCTAAAGCCTCATGAGATGAATGATGGCCGAGTTCAGTTCCGAAAGGTATCTGTTCCTCCACATCGATATTCCCCTCTCAAGAAAGCATGGATGGAGATCTACACCCCGATATATGATCAGATGAAAATCGACATCCGTATGAACCTCAAGGCTCGTAAAGTTGAACTGAAAACAAGAGCAGACACACCTGACATCAGTAACTTGCAAAAGAGTGCAGATTTTGTTCACGCCTTCATGCTCGGTTTTGATGTAATTGATGCCATTGCACTCTTACGAGTGGATGAACTCTATGTAGAATCCTTTGAGATCAAAGATGTTAAGACGCTTCGAGGCGAGCATTTGTCCCGTGCTATAGGCAGATTGTCTGGTAAAGCTGGTAAAACGAAGTTCGCCATTGAAAATGCTACAAAGACAAGGATAGTTATTGCAGACACCAAGATCCACATATTAGGATCCTTCGCCAACATCAAGATTGCTAGAGATTCTCTTTGCAGCCTCATTTTAGGTTCTCCAGCTGGAAAAGTTTATTCAAAACTAAGAGCAGTTACAGCCAGATTGGCAGAAAGGTTTTGA

Protein sequence

MQSTEVPISMEVEVVSSKTATEVGTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPLKKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRADTPDISNLQKSADFVHAFMLGFDVIDAIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTKIHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF

Homology

[Close]

BLAST of HG10008940 vs. NCBI nr
Match: XP_038874451.1 (RNA-binding protein pno1-like [Benincasa hispida])

HSP 1 Score: 427.9 bits (1099), Expect = 5.2e-116
Identity = 220/224 (98.21%), Postives = 222/224 (99.11%), Query Frame = 0


Query: 1   MQSTEVPISMEVEVVSSKTATEVGTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQSTEVPISMEVE VSSKTATEVGTLPPKP+FDPLKPHEMNDGRVQFRKVSVPPHRYSPL
Sbjct: 1   MQSTEVPISMEVEAVSSKTATEVGTLPPKPKFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRADTPDISNLQKSADFVHAFMLGFDVID 120
           KKAWMEIYTPIYDQMKID+RMNLKARKVELKTRADTPDISNLQK ADFVHAFMLGFDVID
Sbjct: 61  KKAWMEIYTPIYDQMKIDVRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDVID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 225
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

[Close]

BLAST of HG10008940 vs. NCBI nr
Match: XP_004145908.1 (RNA-binding protein pno1 [Cucumis sativus] >KGN49911.1 hypothetical protein Csa_000276 [Cucumis sativus])

HSP 1 Score: 427.2 bits (1097), Expect = 8.9e-116
Identity = 218/224 (97.32%), Postives = 221/224 (98.66%), Query Frame = 0


Query: 1   MQSTEVPISMEVEVVSSKTATEVGTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQSTEVP+SMEVE VSSKT TE+GTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL
Sbjct: 1   MQSTEVPVSMEVETVSSKTVTEIGTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRADTPDISNLQKSADFVHAFMLGFDVID 120
           KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRADTPD+SNLQK ADFVHAFMLGFDVID
Sbjct: 61  KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRADTPDVSNLQKCADFVHAFMLGFDVID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 225
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

[Close]

BLAST of HG10008940 vs. NCBI nr
Match: KAA0042585.1 (RNA-binding protein pno1-like [Cucumis melo var. makuwa] >TYK05988.1 RNA-binding protein pno1-like [Cucumis melo var. makuwa])

HSP 1 Score: 424.1 bits (1089), Expect = 7.5e-115
Identity = 217/224 (96.88%), Postives = 221/224 (98.66%), Query Frame = 0


Query: 1   MQSTEVPISMEVEVVSSKTATEVGTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQSTEVP+SMEVE VSSKT TEVGT+PPKPQF+PLKPHEMNDGRVQFRKVSVPPHRYSPL
Sbjct: 17  MQSTEVPVSMEVETVSSKTVTEVGTMPPKPQFEPLKPHEMNDGRVQFRKVSVPPHRYSPL 76

Query: 61  KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRADTPDISNLQKSADFVHAFMLGFDVID 120
           KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRA+TPDISNLQK ADFVHAFMLGFDVID
Sbjct: 77  KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRAETPDISNLQKCADFVHAFMLGFDVID 136

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 137 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 196

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 225
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 197 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 240

[Close]

BLAST of HG10008940 vs. NCBI nr
Match: XP_008437547.1 (PREDICTED: RNA-binding protein pno1-like [Cucumis melo] >XP_016903508.1 PREDICTED: RNA-binding protein pno1-like [Cucumis melo])

HSP 1 Score: 424.1 bits (1089), Expect = 7.5e-115
Identity = 217/224 (96.88%), Postives = 221/224 (98.66%), Query Frame = 0


Query: 1   MQSTEVPISMEVEVVSSKTATEVGTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQSTEVP+SMEVE VSSKT TEVGT+PPKPQF+PLKPHEMNDGRVQFRKVSVPPHRYSPL
Sbjct: 1   MQSTEVPVSMEVETVSSKTVTEVGTMPPKPQFEPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRADTPDISNLQKSADFVHAFMLGFDVID 120
           KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRA+TPDISNLQK ADFVHAFMLGFDVID
Sbjct: 61  KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRAETPDISNLQKCADFVHAFMLGFDVID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 225
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

[Close]

BLAST of HG10008940 vs. NCBI nr
Match: XP_022958607.1 (RNA-binding protein pno1-like [Cucurbita moschata] >XP_022958608.1 RNA-binding protein pno1-like [Cucurbita moschata] >KAG6605749.1 RNA-binding protein pno1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035653.1 RNA-binding protein pno1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 416.4 bits (1069), Expect = 1.6e-112
Identity = 214/224 (95.54%), Postives = 218/224 (97.32%), Query Frame = 0


Query: 1   MQSTEVPISMEVEVVSSKTATEVGTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQSTEVPISMEVE V SK+ TEVG LPPKP F+PLKPHEMNDGRVQFRKVSVPPHRYSPL
Sbjct: 1   MQSTEVPISMEVEAVPSKSTTEVGILPPKPLFEPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRADTPDISNLQKSADFVHAFMLGFDVID 120
           KKAWMEIYTPIY+QMKIDIRMNLKARKVELKTRADTPDISNLQK ADFVHAFMLGFD+ID
Sbjct: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDIID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 225
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

[Close]

BLAST of HG10008940 vs. ExPASy Swiss-Prot
Match: Q9VR89 (RNA-binding protein pno1 OS=Drosophila melanogaster OX=7227 GN=l(1)G0004 PE=2 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 3.0e-66
Identity = 122/187 (65.24%), Postives = 156/187 (83.42%), Query Frame = 0


Query: 37  PHEMNDGRVQFRKVSVPPHRYSPLKKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRADT 96
           P +    R + RKVSVPPHRYS LK+ WM+I+TP+ + MK+ IR N+KAR+VEL+   +T
Sbjct: 53  PPKAKRARSELRKVSVPPHRYSSLKEHWMKIFTPVVEHMKLQIRFNMKARQVELRVGPET 112

Query: 97  PDISNLQKSADFVHAFMLGFDVIDAIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLS 156
           PDI+NLQ+ ADFV AF+ GF+V DA+ALLR+++L+VESFEIKDVKTLRG+H SRAIGRL+
Sbjct: 113 PDIANLQRGADFVRAFLCGFEVDDALALLRLEDLFVESFEIKDVKTLRGDHQSRAIGRLA 172

Query: 157 GKAGKTKFAIENATKTRIVIADTKIHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAV 216
           GK G+TKF IEN TKTRIV+AD+KIHILGS+ NI++AR ++C+LILGSP  KVY  LRAV
Sbjct: 173 GKGGRTKFTIENVTKTRIVLADSKIHILGSYQNIQLARRAVCNLILGSPPSKVYGNLRAV 232

Query: 217 TARLAER 224
            +RL+ER
Sbjct: 233 ASRLSER 239

[Close]

BLAST of HG10008940 vs. ExPASy Swiss-Prot
Match: Q29IG6 (RNA-binding protein pno1 OS=Drosophila pseudoobscura pseudoobscura OX=46245 GN=l(1)G0004 PE=3 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 3.3e-65
Identity = 119/178 (66.85%), Postives = 153/178 (85.96%), Query Frame = 0


Query: 46  QFRKVSVPPHRYSPLKKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRADTPDISNLQKS 105
           + RKVSVPPHRYS LK+ WM+I+TP+ + MK+ IR N+KAR+VEL+   +TPDI+NLQK 
Sbjct: 60  ELRKVSVPPHRYSSLKEHWMKIFTPVVEHMKLQIRFNMKARQVELRVGPETPDIANLQKG 119

Query: 106 ADFVHAFMLGFDVIDAIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFA 165
           ADFV AF+ GF+V DA+ALLR+++L+VE+FEIKDVKTLRG+H SRAIGRL+GK G+TKF 
Sbjct: 120 ADFVKAFLCGFEVDDALALLRLEDLFVETFEIKDVKTLRGDHQSRAIGRLAGKGGRTKFT 179

Query: 166 IENATKTRIVIADTKIHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAER 224
           IEN TKTRIV+AD+KIHILGS+ NI++AR ++C+LILGSP  KVY  LR+V +RL+ER
Sbjct: 180 IENVTKTRIVLADSKIHILGSYQNIQLARRAICNLILGSPPSKVYGNLRSVASRLSER 237

[Close]

BLAST of HG10008940 vs. ExPASy Swiss-Prot
Match: A7RP64 (RNA-binding protein pno1 OS=Nematostella vectensis OX=45351 GN=pno1 PE=3 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 4.4e-65
Identity = 118/196 (60.20%), Postives = 158/196 (80.61%), Query Frame = 0


Query: 29  KPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPLKKAWMEIYTPIYDQMKIDIRMNLKARKV 88
           +P F P+K  ++  G+ + RK+ VP HRY+PLK+ WM+I+TP+ + +K+ IR NL +R V
Sbjct: 43  RPSFPPVKAQKLAGGKSETRKIPVPSHRYTPLKENWMKIFTPVVEHLKLQIRFNLGSRHV 102

Query: 89  ELKTRADTPDISNLQKSADFVHAFMLGFDVIDAIALLRVDELYVESFEIKDVKTLRGEHL 148
           E++   +T DI  +QK+ADFV AF+LGF+V DA+AL+R+D+L++ESFEI DVK L+G+HL
Sbjct: 103 EIRASKETSDIGAVQKAADFVQAFILGFEVEDALALIRLDDLFLESFEIADVKPLKGDHL 162

Query: 149 SRAIGRLSGKAGKTKFAIENATKTRIVIADTKIHILGSFANIKIARDSLCSLILGSPAGK 208
           SRAIGR++GK GKTKF IEN TKTRIV+A+TKIHILGSF NIKIAR ++C+LILGSP  K
Sbjct: 163 SRAIGRVAGKGGKTKFTIENVTKTRIVLAETKIHILGSFQNIKIARTAICNLILGSPPSK 222

Query: 209 VYSKLRAVTARLAERF 225
           VY  +RAV +R AERF
Sbjct: 223 VYGNMRAVASRSAERF 238

[Close]

BLAST of HG10008940 vs. ExPASy Swiss-Prot
Match: Q5F414 (RNA-binding protein PNO1 OS=Gallus gallus OX=9031 GN=PNO1 PE=2 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 2.2e-64
Identity = 122/210 (58.10%), Postives = 164/210 (78.10%), Query Frame = 0


Query: 16  SSKTATEVGTLPPK-PQFDPLKPHEMNDGRVQFRKVSVPPHRYSPLKKAWMEIYTPIYDQ 75
           ++++A   G  P K P F PL    +  G+ + RKV VP +RY+PLK+ WM+I+TPI + 
Sbjct: 33  AAESAEAAGPQPSKRPAFPPLPAAALGVGKGEVRKVPVPANRYTPLKENWMKIFTPIVEH 92

Query: 76  MKIDIRMNLKARKVELKTRADTPDISNLQKSADFVHAFMLGFDVIDAIALLRVDELYVES 135
           +++ IR NLK R VE+KT ++T D+S L K+ADFV AF+LGF V DA+AL+R+D+L++ES
Sbjct: 93  LQLQIRFNLKTRNVEIKTCSETKDLSALTKAADFVKAFILGFQVEDALALIRLDDLFLES 152

Query: 136 FEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTKIHILGSFANIKIAR 195
           FE+ DVK L+G+HLSRAIGR++GK GKTKF IEN T+TRIV+AD+KIHILGSF NIK+AR
Sbjct: 153 FEVTDVKPLKGDHLSRAIGRIAGKGGKTKFTIENVTRTRIVLADSKIHILGSFQNIKMAR 212

Query: 196 DSLCSLILGSPAGKVYSKLRAVTARLAERF 225
            ++C+LILGSP  KVY  +RAV +R AERF
Sbjct: 213 TAICNLILGSPPSKVYGNIRAVASRAAERF 242

[Close]

BLAST of HG10008940 vs. ExPASy Swiss-Prot
Match: Q6VBQ6 (RNA-binding protein PNO1 OS=Oryzias latipes OX=8090 GN=pno1 PE=2 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.4e-63
Identity = 117/196 (59.69%), Postives = 157/196 (80.10%), Query Frame = 0


Query: 29  KPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPLKKAWMEIYTPIYDQMKIDIRMNLKARKV 88
           +P F P+   ++  G  + RKV+VP HRY+PLK+ W++I+TPI + +++ +R NLK R V
Sbjct: 49  RPHFPPISADKLR-GPDEMRKVAVPAHRYTPLKENWLKIFTPIVENLQLQVRFNLKTRNV 108

Query: 89  ELKTRADTPDISNLQKSADFVHAFMLGFDVIDAIALLRVDELYVESFEIKDVKTLRGEHL 148
           E+KT  +T DI+ L K+ADF+ AF+LGF V DA+AL+R+DEL++ESF++ DVK L+G+HL
Sbjct: 109 EIKTCKETQDIAALTKAADFIKAFVLGFQVDDAMALIRLDELFLESFDVTDVKPLKGDHL 168

Query: 149 SRAIGRLSGKAGKTKFAIENATKTRIVIADTKIHILGSFANIKIARDSLCSLILGSPAGK 208
           SRAIGR++GK GKTKF IEN TKTRIV+ADTKIHILGSF NIK+AR ++C+LILGSP  K
Sbjct: 169 SRAIGRIAGKGGKTKFTIENVTKTRIVLADTKIHILGSFQNIKMARTAICNLILGSPPSK 228

Query: 209 VYSKLRAVTARLAERF 225
           VY  +RAV +R AERF
Sbjct: 229 VYGNIRAVASRTAERF 243

[Close]

BLAST of HG10008940 vs. ExPASy TrEMBL
Match: A0A0A0KQC5 (KH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G139880 PE=3 SV=1)

HSP 1 Score: 427.2 bits (1097), Expect = 4.3e-116
Identity = 218/224 (97.32%), Postives = 221/224 (98.66%), Query Frame = 0


Query: 1   MQSTEVPISMEVEVVSSKTATEVGTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQSTEVP+SMEVE VSSKT TE+GTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL
Sbjct: 1   MQSTEVPVSMEVETVSSKTVTEIGTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRADTPDISNLQKSADFVHAFMLGFDVID 120
           KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRADTPD+SNLQK ADFVHAFMLGFDVID
Sbjct: 61  KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRADTPDVSNLQKCADFVHAFMLGFDVID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 225
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

[Close]

BLAST of HG10008940 vs. ExPASy TrEMBL
Match: A0A1S3AUA6 (RNA-binding protein pno1-like OS=Cucumis melo OX=3656 GN=LOC103482927 PE=3 SV=1)

HSP 1 Score: 424.1 bits (1089), Expect = 3.7e-115
Identity = 217/224 (96.88%), Postives = 221/224 (98.66%), Query Frame = 0


Query: 1   MQSTEVPISMEVEVVSSKTATEVGTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQSTEVP+SMEVE VSSKT TEVGT+PPKPQF+PLKPHEMNDGRVQFRKVSVPPHRYSPL
Sbjct: 1   MQSTEVPVSMEVETVSSKTVTEVGTMPPKPQFEPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRADTPDISNLQKSADFVHAFMLGFDVID 120
           KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRA+TPDISNLQK ADFVHAFMLGFDVID
Sbjct: 61  KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRAETPDISNLQKCADFVHAFMLGFDVID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 225
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

[Close]

BLAST of HG10008940 vs. ExPASy TrEMBL
Match: A0A5D3C450 (RNA-binding protein pno1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00840 PE=3 SV=1)

HSP 1 Score: 424.1 bits (1089), Expect = 3.7e-115
Identity = 217/224 (96.88%), Postives = 221/224 (98.66%), Query Frame = 0


Query: 1   MQSTEVPISMEVEVVSSKTATEVGTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQSTEVP+SMEVE VSSKT TEVGT+PPKPQF+PLKPHEMNDGRVQFRKVSVPPHRYSPL
Sbjct: 17  MQSTEVPVSMEVETVSSKTVTEVGTMPPKPQFEPLKPHEMNDGRVQFRKVSVPPHRYSPL 76

Query: 61  KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRADTPDISNLQKSADFVHAFMLGFDVID 120
           KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRA+TPDISNLQK ADFVHAFMLGFDVID
Sbjct: 77  KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRAETPDISNLQKCADFVHAFMLGFDVID 136

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 137 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 196

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 225
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 197 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 240

[Close]

BLAST of HG10008940 vs. ExPASy TrEMBL
Match: A0A6J1H2A3 (RNA-binding protein pno1-like OS=Cucurbita moschata OX=3662 GN=LOC111459784 PE=3 SV=1)

HSP 1 Score: 416.4 bits (1069), Expect = 7.6e-113
Identity = 214/224 (95.54%), Postives = 218/224 (97.32%), Query Frame = 0


Query: 1   MQSTEVPISMEVEVVSSKTATEVGTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQSTEVPISMEVE V SK+ TEVG LPPKP F+PLKPHEMNDGRVQFRKVSVPPHRYSPL
Sbjct: 1   MQSTEVPISMEVEAVPSKSTTEVGILPPKPLFEPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRADTPDISNLQKSADFVHAFMLGFDVID 120
           KKAWMEIYTPIY+QMKIDIRMNLKARKVELKTRADTPDISNLQK ADFVHAFMLGFD+ID
Sbjct: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDIID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 225
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

[Close]

BLAST of HG10008940 vs. ExPASy TrEMBL
Match: A0A6J1K1S8 (RNA-binding protein pno1-like OS=Cucurbita maxima OX=3661 GN=LOC111490946 PE=3 SV=1)

HSP 1 Score: 416.0 bits (1068), Expect = 1.0e-112
Identity = 214/224 (95.54%), Postives = 218/224 (97.32%), Query Frame = 0


Query: 1   MQSTEVPISMEVEVVSSKTATEVGTLPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPL 60
           MQSTEVPISMEVE V SK+ TEVG LPPKP F+PLKPHEMNDGRVQFRKVSVPPHRYSPL
Sbjct: 1   MQSTEVPISMEVEAVPSKSITEVGILPPKPLFEPLKPHEMNDGRVQFRKVSVPPHRYSPL 60

Query: 61  KKAWMEIYTPIYDQMKIDIRMNLKARKVELKTRADTPDISNLQKSADFVHAFMLGFDVID 120
           KKAWMEIYTPIY+QMKIDIRMNLKARKVELKTRADTPDISNLQK ADFVHAFMLGFD+ID
Sbjct: 61  KKAWMEIYTPIYEQMKIDIRMNLKARKVELKTRADTPDISNLQKCADFVHAFMLGFDIID 120

Query: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180
           AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK
Sbjct: 121 AIALLRVDELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTK 180

Query: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 225
           IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF
Sbjct: 181 IHILGSFANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAERF 224

[Close]

BLAST of HG10008940 vs. TAIR 10
Match: AT3G13230.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 349.7 bits (896), Expect = 1.7e-96
Identity = 180/215 (83.72%), Postives = 200/215 (93.02%), Query Frame = 0


Query: 10  MEVEVVSSKTATEVGT--LPPKPQFDPLKPHEMNDGRVQFRKVSVPPHRYSPLKKAWMEI 69
           MEVE     TATE GT  LPPKP F PLK HEM+DG+VQFRK++VPP+RYSPLKKAW++I
Sbjct: 7   MEVE-----TATE-GTVPLPPKPTFKPLKAHEMSDGKVQFRKIAVPPNRYSPLKKAWLDI 66

Query: 70  YTPIYDQMKIDIRMNLKARKVELKTRADTPDISNLQKSADFVHAFMLGFDVIDAIALLRV 129
           YTPIYDQMK+DIRMNLKARKVELKTRADTPDISNLQKSADFVHAFMLGFD+ DAI+LLR+
Sbjct: 67  YTPIYDQMKVDIRMNLKARKVELKTRADTPDISNLQKSADFVHAFMLGFDIPDAISLLRM 126

Query: 130 DELYVESFEIKDVKTLRGEHLSRAIGRLSGKAGKTKFAIENATKTRIVIADTKIHILGSF 189
           DELYVESFEIKDVKTL+GEHLSRAIGRLSGK GKTKFAIEN+TKTRIVIADT+IHILG+F
Sbjct: 127 DELYVESFEIKDVKTLKGEHLSRAIGRLSGKGGKTKFAIENSTKTRIVIADTRIHILGAF 186

Query: 190 ANIKIARDSLCSLILGSPAGKVYSKLRAVTARLAE 223
           +NIK+AR SLCSLI+GSPAGKVYSKLR+V+ARL E
Sbjct: 187 SNIKVARSSLCSLIMGSPAGKVYSKLRSVSARLNE 215

The following BLAST results are available for this feature:

BLAST of HG10008940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038874451.1	5.2e-116	98.21	RNA-binding protein pno1-like [Benincasa hispida]	[more]
XP_004145908.1	8.9e-116	97.32	RNA-binding protein pno1 [Cucumis sativus] >KGN49911.1 hypothetical protein Csa_...	[more]
KAA0042585.1	7.5e-115	96.88	RNA-binding protein pno1-like [Cucumis melo var. makuwa] >TYK05988.1 RNA-binding...	[more]
XP_008437547.1	7.5e-115	96.88	PREDICTED: RNA-binding protein pno1-like [Cucumis melo] >XP_016903508.1 PREDICTE...	[more]
XP_022958607.1	1.6e-112	95.54	RNA-binding protein pno1-like [Cucurbita moschata] >XP_022958608.1 RNA-binding p...	[more]

BLAST of HG10008940 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9VR89	3.0e-66	65.24	RNA-binding protein pno1 OS=Drosophila melanogaster OX=7227 GN=l(1)G0004 PE=2 SV...	[more]
Q29IG6	3.3e-65	66.85	RNA-binding protein pno1 OS=Drosophila pseudoobscura pseudoobscura OX=46245 GN=l...	[more]
A7RP64	4.4e-65	60.20	RNA-binding protein pno1 OS=Nematostella vectensis OX=45351 GN=pno1 PE=3 SV=1	[more]
Q5F414	2.2e-64	58.10	RNA-binding protein PNO1 OS=Gallus gallus OX=9031 GN=PNO1 PE=2 SV=1	[more]
Q6VBQ6	1.4e-63	59.69	RNA-binding protein PNO1 OS=Oryzias latipes OX=8090 GN=pno1 PE=2 SV=1	[more]

BLAST of HG10008940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQC5	4.3e-116	97.32	KH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G139880 PE=3 SV=...	[more]
A0A1S3AUA6	3.7e-115	96.88	RNA-binding protein pno1-like OS=Cucumis melo OX=3656 GN=LOC103482927 PE=3 SV=1	[more]
A0A5D3C450	3.7e-115	96.88	RNA-binding protein pno1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A6J1H2A3	7.6e-113	95.54	RNA-binding protein pno1-like OS=Cucurbita moschata OX=3662 GN=LOC111459784 PE=3...	[more]
A0A6J1K1S8	1.0e-112	95.54	RNA-binding protein pno1-like OS=Cucurbita maxima OX=3661 GN=LOC111490946 PE=3 S...	[more]

BLAST of HG10008940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13230.1	1.7e-96	83.72	RNA-binding KH domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004087	K Homology domain	SMART	SM00322	kh_6	coord: 129..202 e-value: 1.7E-4 score: 31.0
IPR036612	K Homology domain, type 1 superfamily	GENE3D	3.30.1370.10	K Homology domain, type 1	coord: 128..224 e-value: 1.1E-22 score: 81.9
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 129..223
None	No IPR available	PANTHER	PTHR12826	RIBONUCLEASE Y	coord: 11..224
IPR039912	Pre-rRNA-processing protein PNO1-like	PANTHER	PTHR12826:SF13	RNA-BINDING PROTEIN PNO1	coord: 11..224

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10008940.1	HG10008940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding