HG10008930 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10008930
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	WD repeat-containing protein 91-like protein
Location	Chr06: 812471 .. 813013 (-)
RNA-Seq Expression	HG10008930
Synteny	HG10008930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCTGCTTCGAGATCAGTTGAGGAGCAATTTTGTGTTGCTGAAAGATTGTTATAAGAACCAAGAAACAAGGCTTCGTTACTGTGAAACCAAACTTCAAAACATTGTCCTTGGCTACCTTTCTTGGGGACGTCTGTTCTTCTTTGGTATCTTTCAGGCTTCTTCGTCTTTCAACTGCAAGGATTGGTGGGTTGTTTTGGCTTTAAGTCTTTCGTGTACCTTCGTTTACTGTTTGCTTTTCCTGGATGCTGTCACTACGTTTTCTCAGACCCAGGACCAACTTGACATAATCCGGACAAAACTAACTGAAATTTGCCAACAAATTTTGGTAGCTCAAAACCAGGATAATGTGGGTCTATCTATGGAGGCTGGAGAATGTTCTGATGGATTTGAATTGAGTTTCCTTGAGAAGATGTTTATGCTTGATCATTTTAGAATTGCTGGGACTGGGAGGAAAATTTATATTTATTTCACTGTCTGTGCCTTGCTTGCTCTTACTGCTATTGAATTATATGCTTGCAAGTGCTTATTGTGCAATTGA

mRNA sequence

ATGGCGCTGCTTCGAGATCAGTTGAGGAGCAATTTTGTGTTGCTGAAAGATTGTTATAAGAACCAAGAAACAAGGCTTCGTTACTGTGAAACCAAACTTCAAAACATTGTCCTTGGCTACCTTTCTTGGGGACGTCTGTTCTTCTTTGGTATCTTTCAGGCTTCTTCGTCTTTCAACTGCAAGGATTGGTGGGTTGTTTTGGCTTTAAGTCTTTCGTGTACCTTCGTTTACTGTTTGCTTTTCCTGGATGCTGTCACTACGTTTTCTCAGACCCAGGACCAACTTGACATAATCCGGACAAAACTAACTGAAATTTGCCAACAAATTTTGGTAGCTCAAAACCAGGATAATGTGGGTCTATCTATGGAGGCTGGAGAATGTTCTGATGGATTTGAATTGAGTTTCCTTGAGAAGATGTTTATGCTTGATCATTTTAGAATTGCTGGGACTGGGAGGAAAATTTATATTTATTTCACTGTCTGTGCCTTGCTTGCTCTTACTGCTATTGAATTATATGCTTGCAAGTGCTTATTGTGCAATTGA

Coding sequence (CDS)

ATGGCGCTGCTTCGAGATCAGTTGAGGAGCAATTTTGTGTTGCTGAAAGATTGTTATAAGAACCAAGAAACAAGGCTTCGTTACTGTGAAACCAAACTTCAAAACATTGTCCTTGGCTACCTTTCTTGGGGACGTCTGTTCTTCTTTGGTATCTTTCAGGCTTCTTCGTCTTTCAACTGCAAGGATTGGTGGGTTGTTTTGGCTTTAAGTCTTTCGTGTACCTTCGTTTACTGTTTGCTTTTCCTGGATGCTGTCACTACGTTTTCTCAGACCCAGGACCAACTTGACATAATCCGGACAAAACTAACTGAAATTTGCCAACAAATTTTGGTAGCTCAAAACCAGGATAATGTGGGTCTATCTATGGAGGCTGGAGAATGTTCTGATGGATTTGAATTGAGTTTCCTTGAGAAGATGTTTATGCTTGATCATTTTAGAATTGCTGGGACTGGGAGGAAAATTTATATTTATTTCACTGTCTGTGCCTTGCTTGCTCTTACTGCTATTGAATTATATGCTTGCAAGTGCTTATTGTGCAATTGA

Protein sequence

MALLRDQLRSNFVLLKDCYKNQETRLRYCETKLQNIVLGYLSWGRLFFFGIFQASSSFNCKDWWVVLALSLSCTFVYCLLFLDAVTTFSQTQDQLDIIRTKLTEICQQILVAQNQDNVGLSMEAGECSDGFELSFLEKMFMLDHFRIAGTGRKIYIYFTVCALLALTAIELYACKCLLCN

Homology

[Close]

BLAST of HG10008930 vs. NCBI nr
Match: KAA0042579.1 (WD repeat-containing protein 91-like protein [Cucumis melo var. makuwa] >TYK05983.1 WD repeat-containing protein 91-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 265.0 bits (676), Expect = 4.7e-67
Identity = 135/173 (78.03%), Postives = 146/173 (84.39%), Query Frame = 0


Query: 8   LRSNFVLLKDCYKNQETRLRYCETKLQNIVLGYLSWGRLFFFGIFQASSSFNCKDWWVVL 67
           LR NFVLLKD   NQET LRYCETKLQN+VLGYLSWGRLFFFG+   S SF CKDWWV+L
Sbjct: 50  LRRNFVLLKDINDNQETSLRYCETKLQNVVLGYLSWGRLFFFGV---SFSFKCKDWWVIL 109

Query: 68  ALSLSCTFVYCLLFLDAVTTFSQTQDQLDIIRTKLTEICQQILVAQNQDNVGLSMEAGEC 127
           AL+L  TF Y LLF+DAV   S+T DQLDIIR +L EICQQILVAQNQDNVGLSMEAGE 
Sbjct: 110 ALTLFYTFFYFLLFMDAVIMLSRTHDQLDIIRKELAEICQQILVAQNQDNVGLSMEAGED 169

Query: 128 SDGFELSFLEKMFMLDHFRIAGTGRKIYIYFTVCALLALTAIELYACKCLLCN 181
           SDGFELSF E+MFMLD FR+  TGRK+YIYF VC LLA+TAIELYACKCLLCN
Sbjct: 170 SDGFELSFHERMFMLDQFRVVETGRKVYIYFIVCPLLAITAIELYACKCLLCN 219

[Close]

BLAST of HG10008930 vs. NCBI nr
Match: KAE8647812.1 (hypothetical protein Csa_000331 [Cucumis sativus])

HSP 1 Score: 248.4 bits (633), Expect = 4.6e-62
Identity = 133/180 (73.89%), Postives = 142/180 (78.89%), Query Frame = 0


Query: 1   MALLRDQLRSNFVLLKDCYKNQETRLRYCETKLQNIVLGYLSWGRLFFFGIFQASSSFNC 60
           MA L D LR NFVLLK    NQET LRYCETKLQNIVLGYLSWGRLFFFG    S SF C
Sbjct: 1   MAQLGD-LRKNFVLLKHINDNQETSLRYCETKLQNIVLGYLSWGRLFFFGF---SFSFKC 60

Query: 61  KDWWVVLALSLSCTFVYCLLFLDAVTTFSQTQDQLDIIRTKLTEICQQILVAQNQDNVGL 120
           KDWWVVL+L+L  TF+Y LLF+DAV   S+T DQL IIR +LTEICQQILVAQNQD V L
Sbjct: 61  KDWWVVLSLTLLSTFLYLLLFMDAVVMLSRTHDQLGIIRKELTEICQQILVAQNQDTVDL 120

Query: 121 SMEAGECSDGFELSFLEKMFMLDHFRIAGTGRKIYIYFTVCALLALTAIELYACKCLLCN 180
           SME GEC DGFELSF E+MFMLD F +   GRK YIYF VCALL +TAIELYACK LLCN
Sbjct: 121 SMEGGECCDGFELSFHERMFMLDQFSVVENGRKGYIYFIVCALLVITAIELYACKRLLCN 176

[Close]

BLAST of HG10008930 vs. NCBI nr
Match: XP_022157182.1 (uncharacterized protein LOC111023958 [Momordica charantia] >XP_022157183.1 uncharacterized protein LOC111023958 [Momordica charantia])

HSP 1 Score: 218.4 bits (555), Expect = 5.1e-53
Identity = 117/174 (67.24%), Postives = 135/174 (77.59%), Query Frame = 0


Query: 7   QLRSNFVLLKDCYKNQETRLRYCETKLQNIVLGYLSWGRLFFFGIFQASSSFNCKDWWVV 66
           +L   F  LKD  + QE+R+RY ETK+QNIV GYL + RLFFFGI Q SSSFNCKDWWV+
Sbjct: 5   ELERKFEELKDINEKQESRVRYYETKVQNIVFGYLIFTRLFFFGISQTSSSFNCKDWWVI 64

Query: 67  LALSLSCTFVYCLLFLDAVTTFSQTQDQLDIIRTKLTEICQQILVAQNQDNVGLSMEAGE 126
           LALSL C+F+Y LLFLDAV    +TQ QLDII  +L E+ QQILV++NQD+VGLSME GE
Sbjct: 65  LALSLLCSFIYFLLFLDAVAMLFRTQYQLDIICKELKELFQQILVSKNQDDVGLSMETGE 124

Query: 127 CSDGFELSFLEKMFMLDHFRIAGTGRKIYIYFTVCALLALTAIELYACKCLLCN 181
            S GFE  F EKM MLDHFRI   GRK+YIYFTV ALLA+TAIELY  K +LCN
Sbjct: 125 SSGGFEFGFHEKMLMLDHFRI--VGRKVYIYFTVSALLAVTAIELYVSKYVLCN 176

[Close]

BLAST of HG10008930 vs. NCBI nr
Match: XP_022157176.1 (uncharacterized protein LOC111023953 isoform X2 [Momordica charantia])

HSP 1 Score: 206.8 bits (525), Expect = 1.5e-49
Identity = 112/174 (64.37%), Postives = 130/174 (74.71%), Query Frame = 0


Query: 7   QLRSNFVLLKDCYKNQETRLRYCETKLQNIVLGYLSWGRLFFFGIFQASSSFNCKDWWVV 66
           +LR  F  LKD  + QE+R+RY E K Q IV GYL   RLFFFGI Q SSS  C DWWV+
Sbjct: 5   ELRRKFGELKDINEKQESRVRYHEAKFQKIVSGYLILTRLFFFGISQTSSS-KCHDWWVI 64

Query: 67  LALSLSCTFVYCLLFLDAVTTFSQTQDQLDIIRTKLTEICQQILVAQNQDNVGLSMEAGE 126
           L+LSL C+FVY LLFLDA T   QT+ QLD+I  +L E+CQQILVAQNQD+V L+ME G+
Sbjct: 65  LSLSLLCSFVYFLLFLDAATRLYQTKGQLDMICKELIEVCQQILVAQNQDDVDLAMEGGD 124

Query: 127 CSDGFELSFLEKMFMLDHFRIAGTGRKIYIYFTVCALLALTAIELYACKCLLCN 181
            SDGFE  F EKM +LDHFR    GRK+YIYFTVCAL+A+TAIELY  K LLCN
Sbjct: 125 FSDGFEFGFHEKMLVLDHFRF--VGRKVYIYFTVCALVAVTAIELYVSKYLLCN 175

[Close]

BLAST of HG10008930 vs. NCBI nr
Match: XP_022157130.1 (uncharacterized protein LOC111023927 [Momordica charantia])

HSP 1 Score: 174.5 bits (441), Expect = 8.4e-40
Identity = 99/176 (56.25%), Postives = 123/176 (69.89%), Query Frame = 0


Query: 7   QLRSNFVLLKDCYKNQETRLRYCETKLQNIVLGYLSWGRLFFFGIFQASSS-FNCKDWWV 66
           +L+ NF  LKD  + QE+R++Y E++ QNI + YL WGRLFFF I Q SSS   C DWW+
Sbjct: 5   ELKRNFEALKDLVEKQESRVQYHESRAQNITMAYLIWGRLFFFAISQTSSSLLKCIDWWM 64

Query: 67  VLALSLSCTFVYCLLFLDAVTTFSQTQDQLDIIRTKLTEICQQILVAQNQ-DNVGLSMEA 126
           VL LS+SC FVY L FL+AVT   + Q Q+DII  +  EICQQILVA++Q D+V L+MEA
Sbjct: 65  VLGLSVSCAFVYFLFFLEAVTMLYRVQHQMDIICKEQAEICQQILVARSQLDDVDLAMEA 124

Query: 127 GECSDGFELSFLEKMFMLDHFRIAGTGRKIYIYFTVCALLALTAIELYACKCLLCN 181
           G+ SDGF+ SF  K+     FRI    RK YI  TV ALLA+TAIELYAC  L C+
Sbjct: 125 GDSSDGFQFSFHVKLLEYGAFRI--VERKFYICATVSALLAVTAIELYACSWLYCD 178

[Close]

BLAST of HG10008930 vs. ExPASy TrEMBL
Match: A0A5A7TMJ1 (WD repeat-containing protein 91-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00790 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 2.3e-67
Identity = 135/173 (78.03%), Postives = 146/173 (84.39%), Query Frame = 0


Query: 8   LRSNFVLLKDCYKNQETRLRYCETKLQNIVLGYLSWGRLFFFGIFQASSSFNCKDWWVVL 67
           LR NFVLLKD   NQET LRYCETKLQN+VLGYLSWGRLFFFG+   S SF CKDWWV+L
Sbjct: 50  LRRNFVLLKDINDNQETSLRYCETKLQNVVLGYLSWGRLFFFGV---SFSFKCKDWWVIL 109

Query: 68  ALSLSCTFVYCLLFLDAVTTFSQTQDQLDIIRTKLTEICQQILVAQNQDNVGLSMEAGEC 127
           AL+L  TF Y LLF+DAV   S+T DQLDIIR +L EICQQILVAQNQDNVGLSMEAGE 
Sbjct: 110 ALTLFYTFFYFLLFMDAVIMLSRTHDQLDIIRKELAEICQQILVAQNQDNVGLSMEAGED 169

Query: 128 SDGFELSFLEKMFMLDHFRIAGTGRKIYIYFTVCALLALTAIELYACKCLLCN 181
           SDGFELSF E+MFMLD FR+  TGRK+YIYF VC LLA+TAIELYACKCLLCN
Sbjct: 170 SDGFELSFHERMFMLDQFRVVETGRKVYIYFIVCPLLAITAIELYACKCLLCN 219

[Close]

BLAST of HG10008930 vs. ExPASy TrEMBL
Match: A0A0A0KJZ3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139810 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 2.2e-62
Identity = 133/180 (73.89%), Postives = 142/180 (78.89%), Query Frame = 0


Query: 1   MALLRDQLRSNFVLLKDCYKNQETRLRYCETKLQNIVLGYLSWGRLFFFGIFQASSSFNC 60
           MA L D LR NFVLLK    NQET LRYCETKLQNIVLGYLSWGRLFFFG    S SF C
Sbjct: 78  MAQLGD-LRKNFVLLKHINDNQETSLRYCETKLQNIVLGYLSWGRLFFFGF---SFSFKC 137

Query: 61  KDWWVVLALSLSCTFVYCLLFLDAVTTFSQTQDQLDIIRTKLTEICQQILVAQNQDNVGL 120
           KDWWVVL+L+L  TF+Y LLF+DAV   S+T DQL IIR +LTEICQQILVAQNQD V L
Sbjct: 138 KDWWVVLSLTLLSTFLYLLLFMDAVVMLSRTHDQLGIIRKELTEICQQILVAQNQDTVDL 197

Query: 121 SMEAGECSDGFELSFLEKMFMLDHFRIAGTGRKIYIYFTVCALLALTAIELYACKCLLCN 180
           SME GEC DGFELSF E+MFMLD F +   GRK YIYF VCALL +TAIELYACK LLCN
Sbjct: 198 SMEGGECCDGFELSFHERMFMLDQFSVVENGRKGYIYFIVCALLVITAIELYACKRLLCN 253

[Close]

BLAST of HG10008930 vs. ExPASy TrEMBL
Match: A0A6J1DSQ0 (uncharacterized protein LOC111023958 OS=Momordica charantia OX=3673 GN=LOC111023958 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 2.4e-53
Identity = 117/174 (67.24%), Postives = 135/174 (77.59%), Query Frame = 0


Query: 7   QLRSNFVLLKDCYKNQETRLRYCETKLQNIVLGYLSWGRLFFFGIFQASSSFNCKDWWVV 66
           +L   F  LKD  + QE+R+RY ETK+QNIV GYL + RLFFFGI Q SSSFNCKDWWV+
Sbjct: 5   ELERKFEELKDINEKQESRVRYYETKVQNIVFGYLIFTRLFFFGISQTSSSFNCKDWWVI 64

Query: 67  LALSLSCTFVYCLLFLDAVTTFSQTQDQLDIIRTKLTEICQQILVAQNQDNVGLSMEAGE 126
           LALSL C+F+Y LLFLDAV    +TQ QLDII  +L E+ QQILV++NQD+VGLSME GE
Sbjct: 65  LALSLLCSFIYFLLFLDAVAMLFRTQYQLDIICKELKELFQQILVSKNQDDVGLSMETGE 124

Query: 127 CSDGFELSFLEKMFMLDHFRIAGTGRKIYIYFTVCALLALTAIELYACKCLLCN 181
            S GFE  F EKM MLDHFRI   GRK+YIYFTV ALLA+TAIELY  K +LCN
Sbjct: 125 SSGGFEFGFHEKMLMLDHFRI--VGRKVYIYFTVSALLAVTAIELYVSKYVLCN 176

[Close]

BLAST of HG10008930 vs. ExPASy TrEMBL
Match: A0A6J1DX74 (uncharacterized protein LOC111023953 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111023953 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 7.4e-50
Identity = 112/174 (64.37%), Postives = 130/174 (74.71%), Query Frame = 0


Query: 7   QLRSNFVLLKDCYKNQETRLRYCETKLQNIVLGYLSWGRLFFFGIFQASSSFNCKDWWVV 66
           +LR  F  LKD  + QE+R+RY E K Q IV GYL   RLFFFGI Q SSS  C DWWV+
Sbjct: 5   ELRRKFGELKDINEKQESRVRYHEAKFQKIVSGYLILTRLFFFGISQTSSS-KCHDWWVI 64

Query: 67  LALSLSCTFVYCLLFLDAVTTFSQTQDQLDIIRTKLTEICQQILVAQNQDNVGLSMEAGE 126
           L+LSL C+FVY LLFLDA T   QT+ QLD+I  +L E+CQQILVAQNQD+V L+ME G+
Sbjct: 65  LSLSLLCSFVYFLLFLDAATRLYQTKGQLDMICKELIEVCQQILVAQNQDDVDLAMEGGD 124

Query: 127 CSDGFELSFLEKMFMLDHFRIAGTGRKIYIYFTVCALLALTAIELYACKCLLCN 181
            SDGFE  F EKM +LDHFR    GRK+YIYFTVCAL+A+TAIELY  K LLCN
Sbjct: 125 FSDGFEFGFHEKMLVLDHFRF--VGRKVYIYFTVCALVAVTAIELYVSKYLLCN 175

[Close]

BLAST of HG10008930 vs. ExPASy TrEMBL
Match: A0A6J1DS87 (uncharacterized protein LOC111023927 OS=Momordica charantia OX=3673 GN=LOC111023927 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 4.1e-40
Identity = 99/176 (56.25%), Postives = 123/176 (69.89%), Query Frame = 0


Query: 7   QLRSNFVLLKDCYKNQETRLRYCETKLQNIVLGYLSWGRLFFFGIFQASSS-FNCKDWWV 66
           +L+ NF  LKD  + QE+R++Y E++ QNI + YL WGRLFFF I Q SSS   C DWW+
Sbjct: 5   ELKRNFEALKDLVEKQESRVQYHESRAQNITMAYLIWGRLFFFAISQTSSSLLKCIDWWM 64

Query: 67  VLALSLSCTFVYCLLFLDAVTTFSQTQDQLDIIRTKLTEICQQILVAQNQ-DNVGLSMEA 126
           VL LS+SC FVY L FL+AVT   + Q Q+DII  +  EICQQILVA++Q D+V L+MEA
Sbjct: 65  VLGLSVSCAFVYFLFFLEAVTMLYRVQHQMDIICKEQAEICQQILVARSQLDDVDLAMEA 124

Query: 127 GECSDGFELSFLEKMFMLDHFRIAGTGRKIYIYFTVCALLALTAIELYACKCLLCN 181
           G+ SDGF+ SF  K+     FRI    RK YI  TV ALLA+TAIELYAC  L C+
Sbjct: 125 GDSSDGFQFSFHVKLLEYGAFRI--VERKFYICATVSALLAVTAIELYACSWLYCD 178

The following BLAST results are available for this feature:

BLAST of HG10008930 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0042579.1	4.7e-67	78.03	WD repeat-containing protein 91-like protein [Cucumis melo var. makuwa] >TYK0598...	[more]
KAE8647812.1	4.6e-62	73.89	hypothetical protein Csa_000331 [Cucumis sativus]	[more]
XP_022157182.1	5.1e-53	67.24	uncharacterized protein LOC111023958 [Momordica charantia] >XP_022157183.1 uncha...	[more]
XP_022157176.1	1.5e-49	64.37	uncharacterized protein LOC111023953 isoform X2 [Momordica charantia]	[more]
XP_022157130.1	8.4e-40	56.25	uncharacterized protein LOC111023927 [Momordica charantia]	[more]

BLAST of HG10008930 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10008930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TMJ1	2.3e-67	78.03	WD repeat-containing protein 91-like protein OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A0A0KJZ3	2.2e-62	73.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139810 PE=4 SV=1	[more]
A0A6J1DSQ0	2.4e-53	67.24	uncharacterized protein LOC111023958 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1DX74	7.4e-50	64.37	uncharacterized protein LOC111023953 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1DS87	4.1e-40	56.25	uncharacterized protein LOC111023927 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]

BLAST of HG10008930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33287:SF8	SUBFAMILY NOT NAMED	coord: 6..180
None	No IPR available	PANTHER	PTHR33287	OS03G0453550 PROTEIN	coord: 6..180

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10008930.1	HG10008930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane