HG10008920 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10008920
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr06: 742615 .. 742809 (-)
RNA-Seq ExpressionHG10008920
SyntenyHG10008920
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCCACAAACTCCACCAAAAATGGGCCTCAAAGAAACATCATCAGCCATCAATGGCGACAATTCCACCATTAAAATAGTAATTGGAGAAACCCCATTCATATCACATGGACCCTTCTGTTCCTCTGGCGTTTTCGACCATTTTCTGATGTGGGTTTTCTTTTTCTCCTTCCATTTTTTTCTCTGTATGTGA

mRNA sequence

ATGTCTCCACAAACTCCACCAAAAATGGGCCTCAAAGAAACATCATCAGCCATCAATGGCGACAATTCCACCATTAAAATAGTAATTGGAGAAACCCCATTCATATCACATGGACCCTTCTGTTCCTCTGGCGTTTTCGACCATTTTCTGATGTGGGTTTTCTTTTTCTCCTTCCATTTTTTTCTCTGTATGTGA

Coding sequence (CDS)

ATGTCTCCACAAACTCCACCAAAAATGGGCCTCAAAGAAACATCATCAGCCATCAATGGCGACAATTCCACCATTAAAATAGTAATTGGAGAAACCCCATTCATATCACATGGACCCTTCTGTTCCTCTGGCGTTTTCGACCATTTTCTGATGTGGGTTTTCTTTTTCTCCTTCCATTTTTTTCTCTGTATGTGA

Protein sequence

MSPQTPPKMGLKETSSAINGDNSTIKIVIGETPFISHGPFCSSGVFDHFLMWVFFFSFHFFLCM
Homology
[Close]
BLAST of HG10008920 vs. NCBI nr
Match: KGN49889.1 (hypothetical protein Csa_000104 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 1.1e-10
Identity = 38/46 (82.61%), Postives = 42/46 (91.30%), Query Frame = 0 

Query: 9  MGLKETSSAINGDNSTIKIVIGETPFISHGP-FCSSGVFDHFLMWV 54
          MGLKET+SAING NSTIKIVI ETPFISHGP  CSSGVFDHFL+++
Sbjct: 1  MGLKETASAINGGNSTIKIVIEETPFISHGPSSCSSGVFDHFLIFI 46

[Close]
BLAST of HG10008920 vs. ExPASy TrEMBL
Match: A0A0A0KLZ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139670 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 5.3e-11
Identity = 38/46 (82.61%), Postives = 42/46 (91.30%), Query Frame = 0 

Query: 9  MGLKETSSAINGDNSTIKIVIGETPFISHGP-FCSSGVFDHFLMWV 54
          MGLKET+SAING NSTIKIVI ETPFISHGP  CSSGVFDHFL+++
Sbjct: 1  MGLKETASAINGGNSTIKIVIEETPFISHGPSSCSSGVFDHFLIFI 46

The following BLAST results are available for this feature:
BLAST of HG10008920 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN49889.11.1e-1082.61hypothetical protein Csa_000104 [Cucumis sativus][more]
BLAST of HG10008920 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10008920 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KLZ85.3e-1182.61Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139670 PE=4 SV=1[more]
BLAST of HG10008920 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10008920.1HG10008920.1mRNA