HG10008911 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10008911
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Polypyrimidine tract-binding protein-like protein 2
Location	Chr06: 678337 .. 681230 (-)
RNA-Seq Expression	HG10008911
Synteny	HG10008911

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCAAGTTAGTTTCCGCTAGAGATTTCAGAGTGTACGGCCCTCGGCCAGTAAGAAACCGGTCGGAGTACATCAACGCCGGCCTCTACTTGTTCTCCACTGTCCTCCTTCTCGGTGGCTTTCTTGCTCAGCTTTCCCGACAACCCAAATCTGGTTTGGCCCTAATTCTGCTCGCCACTGCCCTAATTACGATCGTTAATTTGCACGATCTCTTCGCCCATCTTGCTGGAATAGATTTCCGGTTGCCGCTGCTTGTTCAGTACGATGCGCAGCTTCTTTTTGTGGAATTTTCTGTTCCGTTTCTTCAGGCGATTGGGTCGCTGCTCTTCTCTTTGGCTGCTCTGTTTCTTCTAATTCAGGTCCCCATTAATCGTTTGCTTGCTTCCTCTGATTAATTTAATTTTCTAGGTTAATAATATACCATTTTCGCTCTGGAATTCCATATTTGTTGAACTAACAAAATTGCACTTGTCGATCTTGATGAGAAATTGTTTGAGGGGCTGGACAATTGGTTCAATGAGATTTTCTGTGTGCTAGTTTAATTAGTCCTGTTCTCTTCTACTGTAAGTCTTGGATTTTAGAAATAGTTTTAGGGCATGAGTGAAAACCAACTCCCGGATTTTCTCTGTATCAGTGGTGATTCAACTATAGTAACTACTTTCTCTACCTATGATATAGTCAAAATCAGCAACCCTTTTAGAACTATTCACTTCTTTGGAGAGTTCAAGTTTCAGGGTCAATAAAGTCAATGTGATTGATTTTCCCTACCATTGGTTGTGATCATTTGGATCATTGAGTGACTGAGTGAGGTATGTAAGGCCCGTTGGTAACATTTCTGCTTTTCTTTTCTTCTATTAGAAAGCATGGTCATTGAGTAACTAGCTATCTTATCAAGAGTGTGGGGTCCTTTAATTTGACTTTTTTATATGAGATTCTCAACATACCCCTCAACCTTTTTGGGTTCACCCTTCTCGATCGGATCTCAAATTCTTTTTTGCCTTTTGGGTTCATCATCCTCGATCGAATTTCAATTTCTTTTTATTGGATCGAATACCTGTTTGGGTTTATGAGTTTTGATATCATATATAACAGGGTTCCATCTCAAAACTAATTGGCAATGAGAGTTGTAATCCATCTATCGTGTAAGGCTCCTTAAATTTTTCCGATGTGGAATCCTCGACATCTTCCATTGTCTTTTCCAAGAAATAAAATCAAAACTGTGTTTAATTGTTTCTGTTTCTTATTGAACATTTGAGAGAACCGAAAAGCATAAAATGGGTGCTCTTAGAGTGAAAGATTATGTAGTCCTTTCAGGAATAGTTACCCAATCTTCAAATTTTCAATTATTATTTATTTTTTTAAAATACGTCATAATGGAAGATGCAGTCCTTTCAGCAATGTTTAGTTGTTCCCGTAGAACAGTGTCGTTGTAAGTACTTGACAATGTTTTGGGCTCACCTGACTTTGTTGCATGCTATCACTGGAGGCCTCGCTCCTCATACCAGGGACACAGAATACAAAACCCCATATCGAAGACCAAAAGCTATGGCGAAATCTAGAAAATGCTATCCTCTCGGTTTCAATGATTGCACATTGTAGGAAAACTATTTGATCAACTTCCTTCTGTTCTTAATGTTAACTTTTTACAGCGTTCATGTTTGTTTTCCTCCTGTTGCACTTTACTAGAGCTGCCATTCAATTTACTGCTGCAGGAACAGAAGGGATATGATTATTACAAACTAGAAAAGCATGCTTCAAATATGCTTATTGCGGGTCCTGCCTTATGGATGCTTGGATCAATCCTCAACTCATGCCAAATCTATGAGAGGGCCGATGGGCATGTTCAAATCTTGCAACAGAGCGTCCATGTTCCATTTTTAATTGGAAGCTTACTGTTCTTTGTTGCAGCAGTTCTCAATATCTATGAGCAGGCCGGGTTAGCCCATCACGGACTCAGACTTCTGGTAAGTGACATGAATATGTACATTTTACTCTCAATAGTTAACAATTGTGGCAGTGTTTATGTTGCATTATATTATTTCTTGCACATACTTTATAGCATTAATTCTAGGTTACATTTACATTGTTGCATTCCTATATCACAGCTTAATCTGATTGCCTGTCTTCAAGTAAAAGTATATTAAGTCTAATTTTGTTAGGTTTAGAGTAAAGGTTTATACCTTCTGCATAATTATATTTCTTTAATACTTTTTAGTTTCTTACTTCCAGGCATAGGTCAAATTGAAGGGGAGTTTATGGTAGGATAATGTGTATGTATAATTAAACTAATGATGACCTAGTGTTCTGTATTTGTGATTATGAGTAGTATTCTATATAGAAATCTCCAATAATAATATAATGTCGATGATGTCAGATACACTAATCAAAATGTATTGATGACTGCGAAACTTTTAAAAGCGTAGTAACTAGAACCATAGTAGTTCATATTTGTTATTTTGCTATCAATGCAGTTTTTGATCATTTTGATGAATATTTATTTGTACTTTACAAATAGAAGTTTGATATTCATCTAACGAAATGGTTGCAAAATGTTTGCTTCATAGTGAATGGCATTCTACTGAAGTTTCATGTGTTGACGAGTCTGTGAATGCAGGGTAAAAACTGGGTTTGGTTAGGTATCTTTGGGAGCTTATCACTCTTGTTAGGCGGACTGGCGAACGTGCTTAAAGTGTTCAAGATGCAGCAGTTTGGGGGATTGCGACTTGAGAAGCTTCGAGGAGGGGCAAACGAGCGGCTTCTCGGAGAAAGAGAAGGCAGGATTCCGCTAATTCTAGAGGATCAAGGGAGGAGAAAACGACACTCCGATGAAGAGAAAGGAAGGCAAGCCGAACCTACCCCTTATAAAGACGTCCTTGTAGGCCAATCTTCCTGA

mRNA sequence

ATGGTCAAGTTAGTTTCCGCTAGAGATTTCAGAGTGTACGGCCCTCGGCCAGTAAGAAACCGGTCGGAGTACATCAACGCCGGCCTCTACTTGTTCTCCACTGTCCTCCTTCTCGGTGGCTTTCTTGCTCAGCTTTCCCGACAACCCAAATCTGGTTTGGCCCTAATTCTGCTCGCCACTGCCCTAATTACGATCGTTAATTTGCACGATCTCTTCGCCCATCTTGCTGGAATAGATTTCCGGTTGCCGCTGCTTGTTCAGTACGATGCGCAGCTTCTTTTTGTGGAATTTTCTGTTCCGTTTCTTCAGGCGATTGGGTCGCTGCTCTTCTCTTTGGCTGCTCTGTTTCTTCTAATTCAGCGTTCATGTTTGTTTTCCTCCTGTTGCACTTTACTAGAGCTGCCATTCAATTTACTGCTGCAGGAACAGAAGGGATATGATTATTACAAACTAGAAAAGCATGCTTCAAATATGCTTATTGCGGGTCCTGCCTTATGGATGCTTGGATCAATCCTCAACTCATGCCAAATCTATGAGAGGGCCGATGGGCATGTTCAAATCTTGCAACAGAGCGTCCATGTTCCATTTTTAATTGGAAGCTTACTGTTCTTTGTTGCAGCAGTTCTCAATATCTATGAGCAGGCCGGGTTAGCCCATCACGGACTCAGACTTCTGGGTAAAAACTGGGTTTGGTTAGGTATCTTTGGGAGCTTATCACTCTTGTTAGGCGGACTGGCGAACGTGCTTAAAGTGTTCAAGATGCAGCAGTTTGGGGGATTGCGACTTGAGAAGCTTCGAGGAGGGGCAAACGAGCGGCTTCTCGGAGAAAGAGAAGGCAGGATTCCGCTAATTCTAGAGGATCAAGGGAGGAGAAAACGACACTCCGATGAAGAGAAAGGAAGGCAAGCCGAACCTACCCCTTATAAAGACGTCCTTGTAGGCCAATCTTCCTGA

Coding sequence (CDS)

ATGGTCAAGTTAGTTTCCGCTAGAGATTTCAGAGTGTACGGCCCTCGGCCAGTAAGAAACCGGTCGGAGTACATCAACGCCGGCCTCTACTTGTTCTCCACTGTCCTCCTTCTCGGTGGCTTTCTTGCTCAGCTTTCCCGACAACCCAAATCTGGTTTGGCCCTAATTCTGCTCGCCACTGCCCTAATTACGATCGTTAATTTGCACGATCTCTTCGCCCATCTTGCTGGAATAGATTTCCGGTTGCCGCTGCTTGTTCAGTACGATGCGCAGCTTCTTTTTGTGGAATTTTCTGTTCCGTTTCTTCAGGCGATTGGGTCGCTGCTCTTCTCTTTGGCTGCTCTGTTTCTTCTAATTCAGCGTTCATGTTTGTTTTCCTCCTGTTGCACTTTACTAGAGCTGCCATTCAATTTACTGCTGCAGGAACAGAAGGGATATGATTATTACAAACTAGAAAAGCATGCTTCAAATATGCTTATTGCGGGTCCTGCCTTATGGATGCTTGGATCAATCCTCAACTCATGCCAAATCTATGAGAGGGCCGATGGGCATGTTCAAATCTTGCAACAGAGCGTCCATGTTCCATTTTTAATTGGAAGCTTACTGTTCTTTGTTGCAGCAGTTCTCAATATCTATGAGCAGGCCGGGTTAGCCCATCACGGACTCAGACTTCTGGGTAAAAACTGGGTTTGGTTAGGTATCTTTGGGAGCTTATCACTCTTGTTAGGCGGACTGGCGAACGTGCTTAAAGTGTTCAAGATGCAGCAGTTTGGGGGATTGCGACTTGAGAAGCTTCGAGGAGGGGCAAACGAGCGGCTTCTCGGAGAAAGAGAAGGCAGGATTCCGCTAATTCTAGAGGATCAAGGGAGGAGAAAACGACACTCCGATGAAGAGAAAGGAAGGCAAGCCGAACCTACCCCTTATAAAGACGTCCTTGTAGGCCAATCTTCCTGA

Protein sequence

MVKLVSARDFRVYGPRPVRNRSEYINAGLYLFSTVLLLGGFLAQLSRQPKSGLALILLATALITIVNLHDLFAHLAGIDFRLPLLVQYDAQLLFVEFSVPFLQAIGSLLFSLAALFLLIQRSCLFSSCCTLLELPFNLLLQEQKGYDYYKLEKHASNMLIAGPALWMLGSILNSCQIYERADGHVQILQQSVHVPFLIGSLLFFVAAVLNIYEQAGLAHHGLRLLGKNWVWLGIFGSLSLLLGGLANVLKVFKMQQFGGLRLEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEEKGRQAEPTPYKDVLVGQSS

Homology

[Close]

BLAST of HG10008911 vs. NCBI nr
Match: XP_038874807.1 (uncharacterized protein LOC120067318 [Benincasa hispida])

HSP 1 Score: 520.8 bits (1340), Expect = 8.4e-144
Identity = 276/317 (87.07%), Postives = 285/317 (89.91%), Query Frame = 0


Query: 1   MVKLVSARDFRVYGPRPVRNRSEYINAGLYLFSTVLLLGGFLAQLSRQPKSGLALILLAT 60
           MVKLVSARDFRVYGPRPVRNR+EYINAGLYLF+TVLLLGGF+AQLSR+P SGLALIL AT
Sbjct: 1   MVKLVSARDFRVYGPRPVRNRAEYINAGLYLFATVLLLGGFVAQLSREPMSGLALILFAT 60

Query: 61  ALITIVNLHDLFAHLAGIDFRLPLLVQYDAQLLFVEFSVPFLQAIGSLLFSLAALFLLIQ 120
           ALITIVNLHDLFAHLAGID+RLPLLVQYDAQLLFVEFSVPFLQAIGSLL SL ALFLLI 
Sbjct: 61  ALITIVNLHDLFAHLAGIDYRLPLLVQYDAQLLFVEFSVPFLQAIGSLLLSLGALFLLI- 120

Query: 121 RSCLFSSCCTLLELPFNLLLQEQKGYDYYKLEKHASNMLIAGPALWMLGSILNSCQIYER 180
                               QEQKG+DYYKLEKHASNMLIAGPALWMLGSILNSCQIYER
Sbjct: 121 --------------------QEQKGHDYYKLEKHASNMLIAGPALWMLGSILNSCQIYER 180

Query: 181 ADGHVQILQQSVHVPFLIGSLLFFVAAVLNIYEQAGLAHHGLRLLGKNWVWLGIFGSLSL 240
           ADGHVQILQQSVH+PFLIGSLLFFVAAVLN YEQA LAHHGLRLLGKNWVWLGIFGSLSL
Sbjct: 181 ADGHVQILQQSVHIPFLIGSLLFFVAAVLNRYEQAKLAHHGLRLLGKNWVWLGIFGSLSL 240

Query: 241 LLGGLANVLKVFKMQQFGGLRLEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEEKG 300
           LLGGL+NVLKVFKMQQF GLRLEKLRGGANERLL EREGRIPLILEDQGRRKRH DEEKG
Sbjct: 241 LLGGLSNVLKVFKMQQFEGLRLEKLRGGANERLLEEREGRIPLILEDQGRRKRHVDEEKG 296

Query: 301 RQAEPTPYKDVLVGQSS 318
           R+A  TPYKDVLVGQSS
Sbjct: 301 REARSTPYKDVLVGQSS 296

[Close]

BLAST of HG10008911 vs. NCBI nr
Match: TYK05966.1 (polypyrimidine tract-binding protein-like protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 518.1 bits (1333), Expect = 5.4e-143
Identity = 270/316 (85.44%), Postives = 286/316 (90.51%), Query Frame = 0


Query: 1   MVKLVSARDFRVYGPRPVRNRSEYINAGLYLFSTVLLLGGFLAQLSRQPKSGLALILLAT 60
           MVKLVSARDFRVYGPRP+RNR+EYINAGLYLF+T+LLLGGF+AQLSR+PKSGLALILLAT
Sbjct: 1   MVKLVSARDFRVYGPRPLRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT 60

Query: 61  ALITIVNLHDLFAHLAGIDFRLPLLVQYDAQLLFVEFSVPFLQAIGSLLFSLAALFLLIQ 120
           +LI IVNLHDLFAHLAGID+RLPLLVQYDAQL FVEF+VPFLQAIGSLL SLAALFLLI 
Sbjct: 61  SLIAIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSLAALFLLI- 120

Query: 121 RSCLFSSCCTLLELPFNLLLQEQKGYDYYKLEKHASNMLIAGPALWMLGSILNSCQIYER 180
                               QE+KG+DY KLEKHASNMLIAGPALWMLGSI NSCQIYER
Sbjct: 121 --------------------QEKKGHDYDKLEKHASNMLIAGPALWMLGSIHNSCQIYER 180

Query: 181 ADGHVQILQQSVHVPFLIGSLLFFVAAVLNIYEQAGLAHHGLRLLGKNWVWLGIFGSLSL 240
           ADGHVQILQQSVH+PFLIGSLLFFVAAVLN YEQ GLAHHGL+LLGKNW+WLGIFGSLSL
Sbjct: 181 ADGHVQILQQSVHIPFLIGSLLFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSL 240

Query: 241 LLGGLANVLKVFKMQQFGGLRLEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEEKG 300
           LLGGLANVLKVFKMQQF GLRLEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEE+G
Sbjct: 241 LLGGLANVLKVFKMQQFEGLRLEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERG 295

Query: 301 RQAEPTPYKDVLVGQS 317
           R+A PTPYKDVLVGQS
Sbjct: 301 REARPTPYKDVLVGQS 295

[Close]

BLAST of HG10008911 vs. NCBI nr
Match: XP_008437579.1 (PREDICTED: LOW QUALITY PROTEIN: polypyrimidine tract-binding protein homolog 2 [Cucumis melo])

HSP 1 Score: 516.5 bits (1329), Expect = 1.6e-142
Identity = 270/316 (85.44%), Postives = 285/316 (90.19%), Query Frame = 0


Query: 1   MVKLVSARDFRVYGPRPVRNRSEYINAGLYLFSTVLLLGGFLAQLSRQPKSGLALILLAT 60
           MVKLVSARDFRVYGPRP+RNR+EYINAGLYLF+T+LLLGGF+AQLSR+PKSGLALILLAT
Sbjct: 1   MVKLVSARDFRVYGPRPLRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT 60

Query: 61  ALITIVNLHDLFAHLAGIDFRLPLLVQYDAQLLFVEFSVPFLQAIGSLLFSLAALFLLIQ 120
           +LI IVNLHDLFAHLAGID RLPLLVQYDAQL FVEF+VPFLQAIGSLL SLAALFLLI 
Sbjct: 61  SLIAIVNLHDLFAHLAGIDHRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSLAALFLLI- 120

Query: 121 RSCLFSSCCTLLELPFNLLLQEQKGYDYYKLEKHASNMLIAGPALWMLGSILNSCQIYER 180
                               QE+KG+DY KLEKHASNMLIAGPALWMLGSI NSCQIYER
Sbjct: 121 --------------------QEKKGHDYDKLEKHASNMLIAGPALWMLGSIHNSCQIYER 180

Query: 181 ADGHVQILQQSVHVPFLIGSLLFFVAAVLNIYEQAGLAHHGLRLLGKNWVWLGIFGSLSL 240
           ADGHVQILQQSVH+PFLIGSLLFFVAAVLN YEQ GLAHHGL+LLGKNW+WLGIFGSLSL
Sbjct: 181 ADGHVQILQQSVHIPFLIGSLLFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSL 240

Query: 241 LLGGLANVLKVFKMQQFGGLRLEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEEKG 300
           LLGGLANVLKVFKMQQF GLRLEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEE+G
Sbjct: 241 LLGGLANVLKVFKMQQFEGLRLEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERG 295

Query: 301 RQAEPTPYKDVLVGQS 317
           R+A PTPYKDVLVGQS
Sbjct: 301 REARPTPYKDVLVGQS 295

[Close]

BLAST of HG10008911 vs. NCBI nr
Match: KAA0042561.1 (polypyrimidine tract-binding protein-like protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 510.8 bits (1314), Expect = 8.7e-141
Identity = 266/312 (85.26%), Postives = 282/312 (90.38%), Query Frame = 0


Query: 1   MVKLVSARDFRVYGPRPVRNRSEYINAGLYLFSTVLLLGGFLAQLSRQPKSGLALILLAT 60
           MVKLVSARDFRVYGPRP+RNR+EYINAGLYLF+T+LLLGGF+AQLSR+PKSGLALILLAT
Sbjct: 1   MVKLVSARDFRVYGPRPLRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT 60

Query: 61  ALITIVNLHDLFAHLAGIDFRLPLLVQYDAQLLFVEFSVPFLQAIGSLLFSLAALFLLIQ 120
           +LI IVNLHDLFAHLAGID+RLPLLVQYDAQL FVEF+VPFLQAIGSLL SLAALFLLI 
Sbjct: 61  SLIAIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSLAALFLLI- 120

Query: 121 RSCLFSSCCTLLELPFNLLLQEQKGYDYYKLEKHASNMLIAGPALWMLGSILNSCQIYER 180
                               QE+KG+DY KLEKHASNMLIAGPALWMLGSI NSCQIYER
Sbjct: 121 --------------------QEKKGHDYDKLEKHASNMLIAGPALWMLGSIHNSCQIYER 180

Query: 181 ADGHVQILQQSVHVPFLIGSLLFFVAAVLNIYEQAGLAHHGLRLLGKNWVWLGIFGSLSL 240
           ADGHVQILQQSVH+PFLIGSLLFFVAAVLN YEQ GLAHHGL+LLGKNW+WLGIFGSLSL
Sbjct: 181 ADGHVQILQQSVHIPFLIGSLLFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSL 240

Query: 241 LLGGLANVLKVFKMQQFGGLRLEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEEKG 300
           LLGGLANVLKVFKMQQF GLRLEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEE+G
Sbjct: 241 LLGGLANVLKVFKMQQFEGLRLEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERG 291

Query: 301 RQAEPTPYKDVL 313
           R+A PTPYKDVL
Sbjct: 301 REARPTPYKDVL 291

[Close]

BLAST of HG10008911 vs. NCBI nr
Match: XP_031741225.1 (polypyrimidine tract-binding protein homolog 2 [Cucumis sativus])

HSP 1 Score: 506.5 bits (1303), Expect = 1.6e-139
Identity = 266/317 (83.91%), Postives = 282/317 (88.96%), Query Frame = 0


Query: 1   MVKLVSARDFRVYGPRPVRNRSEYINAGLYLFSTVLLLGGFLAQLSRQPKSGLALILLAT 60
           MVKLVSARDFRVYGPR VRNR+EYINAGLYLF+T+LLLGGF+AQLSR+PKSGLALILLAT
Sbjct: 1   MVKLVSARDFRVYGPRSVRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT 60

Query: 61  ALITIVNLHDLFAHLAGIDFRLPLLVQYDAQLLFVEFSVPFLQAIGSLLFSLAALFLLIQ 120
           +L  IVNLHDLFAHLAGID+RLPLLVQYDAQL FVEF+VPFLQAIGSLL S AALFLLI 
Sbjct: 61  SLFAIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSFAALFLLI- 120

Query: 121 RSCLFSSCCTLLELPFNLLLQEQKGYDYYKLEKHASNMLIAGPALWMLGSILNSCQIYER 180
                               QE+KG+DY+KLEKHASNMLIAGPALWMLGSI NSCQIYER
Sbjct: 121 --------------------QEKKGHDYHKLEKHASNMLIAGPALWMLGSIHNSCQIYER 180

Query: 181 ADGHVQILQQSVHVPFLIGSLLFFVAAVLNIYEQAGLAHHGLRLLGKNWVWLGIFGSLSL 240
           AD HVQILQQSVH+PFLIGSLLFFVAAVLN YEQ GLAHHGL+LLGKNW+WLGIFGSLS 
Sbjct: 181 ADAHVQILQQSVHIPFLIGSLLFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSF 240

Query: 241 LLGGLANVLKVFKMQQFGGLRLEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEEKG 300
           LLGGLANVLKVFKMQQF GLRLEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEE+G
Sbjct: 241 LLGGLANVLKVFKMQQFEGLRLEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERG 296

Query: 301 R-QAEPTPYKDVLVGQS 317
           R +A PTPYKDVLVGQS
Sbjct: 301 RVEARPTPYKDVLVGQS 296

[Close]

BLAST of HG10008911 vs. ExPASy TrEMBL
Match: A0A5D3C6J8 (Polypyrimidine tract-binding protein-like protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00600 PE=4 SV=1)

HSP 1 Score: 518.1 bits (1333), Expect = 2.6e-143
Identity = 270/316 (85.44%), Postives = 286/316 (90.51%), Query Frame = 0


Query: 1   MVKLVSARDFRVYGPRPVRNRSEYINAGLYLFSTVLLLGGFLAQLSRQPKSGLALILLAT 60
           MVKLVSARDFRVYGPRP+RNR+EYINAGLYLF+T+LLLGGF+AQLSR+PKSGLALILLAT
Sbjct: 1   MVKLVSARDFRVYGPRPLRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT 60

Query: 61  ALITIVNLHDLFAHLAGIDFRLPLLVQYDAQLLFVEFSVPFLQAIGSLLFSLAALFLLIQ 120
           +LI IVNLHDLFAHLAGID+RLPLLVQYDAQL FVEF+VPFLQAIGSLL SLAALFLLI 
Sbjct: 61  SLIAIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSLAALFLLI- 120

Query: 121 RSCLFSSCCTLLELPFNLLLQEQKGYDYYKLEKHASNMLIAGPALWMLGSILNSCQIYER 180
                               QE+KG+DY KLEKHASNMLIAGPALWMLGSI NSCQIYER
Sbjct: 121 --------------------QEKKGHDYDKLEKHASNMLIAGPALWMLGSIHNSCQIYER 180

Query: 181 ADGHVQILQQSVHVPFLIGSLLFFVAAVLNIYEQAGLAHHGLRLLGKNWVWLGIFGSLSL 240
           ADGHVQILQQSVH+PFLIGSLLFFVAAVLN YEQ GLAHHGL+LLGKNW+WLGIFGSLSL
Sbjct: 181 ADGHVQILQQSVHIPFLIGSLLFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSL 240

Query: 241 LLGGLANVLKVFKMQQFGGLRLEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEEKG 300
           LLGGLANVLKVFKMQQF GLRLEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEE+G
Sbjct: 241 LLGGLANVLKVFKMQQFEGLRLEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERG 295

Query: 301 RQAEPTPYKDVLVGQS 317
           R+A PTPYKDVLVGQS
Sbjct: 301 REARPTPYKDVLVGQS 295

[Close]

BLAST of HG10008911 vs. ExPASy TrEMBL
Match: A0A1S3AUZ4 (LOW QUALITY PROTEIN: polypyrimidine tract-binding protein homolog 2 OS=Cucumis melo OX=3656 GN=LOC103482951 PE=4 SV=1)

HSP 1 Score: 516.5 bits (1329), Expect = 7.7e-143
Identity = 270/316 (85.44%), Postives = 285/316 (90.19%), Query Frame = 0


Query: 1   MVKLVSARDFRVYGPRPVRNRSEYINAGLYLFSTVLLLGGFLAQLSRQPKSGLALILLAT 60
           MVKLVSARDFRVYGPRP+RNR+EYINAGLYLF+T+LLLGGF+AQLSR+PKSGLALILLAT
Sbjct: 1   MVKLVSARDFRVYGPRPLRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT 60

Query: 61  ALITIVNLHDLFAHLAGIDFRLPLLVQYDAQLLFVEFSVPFLQAIGSLLFSLAALFLLIQ 120
           +LI IVNLHDLFAHLAGID RLPLLVQYDAQL FVEF+VPFLQAIGSLL SLAALFLLI 
Sbjct: 61  SLIAIVNLHDLFAHLAGIDHRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSLAALFLLI- 120

Query: 121 RSCLFSSCCTLLELPFNLLLQEQKGYDYYKLEKHASNMLIAGPALWMLGSILNSCQIYER 180
                               QE+KG+DY KLEKHASNMLIAGPALWMLGSI NSCQIYER
Sbjct: 121 --------------------QEKKGHDYDKLEKHASNMLIAGPALWMLGSIHNSCQIYER 180

Query: 181 ADGHVQILQQSVHVPFLIGSLLFFVAAVLNIYEQAGLAHHGLRLLGKNWVWLGIFGSLSL 240
           ADGHVQILQQSVH+PFLIGSLLFFVAAVLN YEQ GLAHHGL+LLGKNW+WLGIFGSLSL
Sbjct: 181 ADGHVQILQQSVHIPFLIGSLLFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSL 240

Query: 241 LLGGLANVLKVFKMQQFGGLRLEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEEKG 300
           LLGGLANVLKVFKMQQF GLRLEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEE+G
Sbjct: 241 LLGGLANVLKVFKMQQFEGLRLEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERG 295

Query: 301 RQAEPTPYKDVLVGQS 317
           R+A PTPYKDVLVGQS
Sbjct: 301 REARPTPYKDVLVGQS 295

[Close]

BLAST of HG10008911 vs. ExPASy TrEMBL
Match: A0A5A7TLW2 (Polypyrimidine tract-binding protein-like protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G00560 PE=4 SV=1)

HSP 1 Score: 510.8 bits (1314), Expect = 4.2e-141
Identity = 266/312 (85.26%), Postives = 282/312 (90.38%), Query Frame = 0


Query: 1   MVKLVSARDFRVYGPRPVRNRSEYINAGLYLFSTVLLLGGFLAQLSRQPKSGLALILLAT 60
           MVKLVSARDFRVYGPRP+RNR+EYINAGLYLF+T+LLLGGF+AQLSR+PKSGLALILLAT
Sbjct: 1   MVKLVSARDFRVYGPRPLRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT 60

Query: 61  ALITIVNLHDLFAHLAGIDFRLPLLVQYDAQLLFVEFSVPFLQAIGSLLFSLAALFLLIQ 120
           +LI IVNLHDLFAHLAGID+RLPLLVQYDAQL FVEF+VPFLQAIGSLL SLAALFLLI 
Sbjct: 61  SLIAIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSLAALFLLI- 120

Query: 121 RSCLFSSCCTLLELPFNLLLQEQKGYDYYKLEKHASNMLIAGPALWMLGSILNSCQIYER 180
                               QE+KG+DY KLEKHASNMLIAGPALWMLGSI NSCQIYER
Sbjct: 121 --------------------QEKKGHDYDKLEKHASNMLIAGPALWMLGSIHNSCQIYER 180

Query: 181 ADGHVQILQQSVHVPFLIGSLLFFVAAVLNIYEQAGLAHHGLRLLGKNWVWLGIFGSLSL 240
           ADGHVQILQQSVH+PFLIGSLLFFVAAVLN YEQ GLAHHGL+LLGKNW+WLGIFGSLSL
Sbjct: 181 ADGHVQILQQSVHIPFLIGSLLFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSL 240

Query: 241 LLGGLANVLKVFKMQQFGGLRLEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEEKG 300
           LLGGLANVLKVFKMQQF GLRLEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEE+G
Sbjct: 241 LLGGLANVLKVFKMQQFEGLRLEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERG 291

Query: 301 RQAEPTPYKDVL 313
           R+A PTPYKDVL
Sbjct: 301 REARPTPYKDVL 291

[Close]

BLAST of HG10008911 vs. ExPASy TrEMBL
Match: A0A0A0KJH6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139580 PE=4 SV=1)

HSP 1 Score: 506.5 bits (1303), Expect = 7.9e-140
Identity = 266/317 (83.91%), Postives = 282/317 (88.96%), Query Frame = 0


Query: 1   MVKLVSARDFRVYGPRPVRNRSEYINAGLYLFSTVLLLGGFLAQLSRQPKSGLALILLAT 60
           MVKLVSARDFRVYGPR VRNR+EYINAGLYLF+T+LLLGGF+AQLSR+PKSGLALILLAT
Sbjct: 1   MVKLVSARDFRVYGPRSVRNRAEYINAGLYLFATILLLGGFVAQLSREPKSGLALILLAT 60

Query: 61  ALITIVNLHDLFAHLAGIDFRLPLLVQYDAQLLFVEFSVPFLQAIGSLLFSLAALFLLIQ 120
           +L  IVNLHDLFAHLAGID+RLPLLVQYDAQL FVEF+VPFLQAIGSLL S AALFLLI 
Sbjct: 61  SLFAIVNLHDLFAHLAGIDYRLPLLVQYDAQLFFVEFAVPFLQAIGSLLLSFAALFLLI- 120

Query: 121 RSCLFSSCCTLLELPFNLLLQEQKGYDYYKLEKHASNMLIAGPALWMLGSILNSCQIYER 180
                               QE+KG+DY+KLEKHASNMLIAGPALWMLGSI NSCQIYER
Sbjct: 121 --------------------QEKKGHDYHKLEKHASNMLIAGPALWMLGSIHNSCQIYER 180

Query: 181 ADGHVQILQQSVHVPFLIGSLLFFVAAVLNIYEQAGLAHHGLRLLGKNWVWLGIFGSLSL 240
           AD HVQILQQSVH+PFLIGSLLFFVAAVLN YEQ GLAHHGL+LLGKNW+WLGIFGSLS 
Sbjct: 181 ADAHVQILQQSVHIPFLIGSLLFFVAAVLNSYEQVGLAHHGLKLLGKNWIWLGIFGSLSF 240

Query: 241 LLGGLANVLKVFKMQQFGGLRLEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEEKG 300
           LLGGLANVLKVFKMQQF GLRLEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEE+G
Sbjct: 241 LLGGLANVLKVFKMQQFEGLRLEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEERG 296

Query: 301 R-QAEPTPYKDVLVGQS 317
           R +A PTPYKDVLVGQS
Sbjct: 301 RVEARPTPYKDVLVGQS 296

[Close]

BLAST of HG10008911 vs. ExPASy TrEMBL
Match: A0A6J1K7T0 (uncharacterized protein LOC111490949 OS=Cucurbita maxima OX=3661 GN=LOC111490949 PE=4 SV=1)

HSP 1 Score: 490.0 bits (1260), Expect = 7.7e-135
Identity = 258/317 (81.39%), Postives = 274/317 (86.44%), Query Frame = 0


Query: 1   MVKLVSARDFRVYGPRPVRNRSEYINAGLYLFSTVLLLGGFLAQLSRQPKSGLALILLAT 60
           MVKL SARDFR YGPR  R+R+EYINAGLYLF+T+LLLGGF+AQLSR+ KSGLALI+LA 
Sbjct: 1   MVKLASARDFRAYGPRAARSRAEYINAGLYLFATILLLGGFVAQLSREAKSGLALIVLAA 60

Query: 61  ALITIVNLHDLFAHLAGIDFRLPLLVQYDAQLLFVEFSVPFLQAIGSLLFSLAALFLLIQ 120
           ALI IVN+HDLFAHLAGID+RLPLL QYD QLLFVEFSVPFLQAIGSLL SL  LFLLI 
Sbjct: 61  ALILIVNVHDLFAHLAGIDYRLPLLAQYDVQLLFVEFSVPFLQAIGSLLLSLGTLFLLI- 120

Query: 121 RSCLFSSCCTLLELPFNLLLQEQKGYDYYKLEKHASNMLIAGPALWMLGSILNSCQIYER 180
                               QEQKG+DYYKLEKH  +MLIAGPALW+LGSILNSCQIYER
Sbjct: 121 --------------------QEQKGHDYYKLEKHVLDMLIAGPALWILGSILNSCQIYER 180

Query: 181 ADGHVQILQQSVHVPFLIGSLLFFVAAVLNIYEQAGLAHHGLRLLGKNWVWLGIFGSLSL 240
           ADGHVQILQQSVH+PFLIGSLLFFVAAVLN +EQAGLAH GL+LLGKNWVW GIFGSLSL
Sbjct: 181 ADGHVQILQQSVHIPFLIGSLLFFVAAVLNGFEQAGLAHRGLKLLGKNWVWFGIFGSLSL 240

Query: 241 LLGGLANVLKVFKMQQFGGLRLEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEEKG 300
           LLGGL NV KVFKMQQF GLRLEKLRGGANERLLGEREGRIPLILEDQGRRKR SDEEKG
Sbjct: 241 LLGGLGNVHKVFKMQQFDGLRLEKLRGGANERLLGEREGRIPLILEDQGRRKRLSDEEKG 296

Query: 301 RQAEPTPYKDVLVGQSS 318
           RQA PTPYKDVLVGQ+S
Sbjct: 301 RQASPTPYKDVLVGQTS 296

[Close]

BLAST of HG10008911 vs. TAIR 10
Match: AT5G24130.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: petal, leaf whorl, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 314.7 bits (805), Expect = 8.5e-86
Identity = 179/337 (53.12%), Postives = 225/337 (66.77%), Query Frame = 0


Query: 1   MVKLVSARDFRVYGPRPVRNRSEYINAGLYLFSTVLLLGGFLAQ-LSRQPKSGLALILLA 60
           MVKL +AR+ R YGPR  R+R+EYINAGLYLF+TV+L+GGF A   S +P+SGL LILLA
Sbjct: 1   MVKLATAREIRTYGPRLGRSRAEYINAGLYLFATVVLIGGFTATGFSWEPRSGLVLILLA 60

Query: 61  TALITIVNLHDLFAHLAGIDFRLPLLVQYDAQLLFVEFSVPFLQAIGSLLFSLAALFLLI 120
             LIT VN+HDL AHLAGID+RL L+ +YD QL  VEF+VP +Q  GS++F L   F+  
Sbjct: 61  LVLITAVNVHDLVAHLAGIDYRLRLM-EYDLQLGLVEFAVPLVQIAGSVVFFLGIFFVFH 120

Query: 121 QRSCLFSSCCTLLELPFNLLLQEQKGYDYYKLEKHASNMLIAGPALWMLGSILNSCQIYE 180
           Q                    + ++GY     E HA N+LIAGP LW++GSI NSCQIYE
Sbjct: 121 Q-------------------AETKRGYS--GREHHALNLLIAGPLLWLIGSIHNSCQIYE 180

Query: 181 RADGHVQILQQSVHVPFLIGSLLFFVAAVLNIYEQAGLAHHGLRLLGKNWVWLGIFGSLS 240
           RAD HVQILQQ V++PFL+GSLLF V+AVLN  + +G +  GL+LLG+ W+WLGI G++ 
Sbjct: 181 RADSHVQILQQCVYIPFLVGSLLFLVSAVLNSLDISGSSRSGLKLLGERWIWLGISGAIC 240

Query: 241 LLLGGLANVLKVFKMQQFGGLRLEKLRGGANERLLGEREGRIPLILEDQGRRKRHSDEEK 300
           L +GGL NV+KVF   Q  GLRLEKLRGGA +RLL  REG +PL+ E++  RK  +D E 
Sbjct: 241 LFVGGLLNVVKVFNFVQISGLRLEKLRGGAQDRLLEGREGYLPLVAEEERIRKMEADHEA 300

Query: 301 GRQAE---------------------PTPYKDVLVGQ 316
             +A+                     PTPYKDVLVGQ
Sbjct: 301 SSRAKPRAHTTSKAGEGATETVVVSSPTPYKDVLVGQ 315

The following BLAST results are available for this feature:

BLAST of HG10008911 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038874807.1	8.4e-144	87.07	uncharacterized protein LOC120067318 [Benincasa hispida]	[more]
TYK05966.1	5.4e-143	85.44	polypyrimidine tract-binding protein-like protein 2 [Cucumis melo var. makuwa]	[more]
XP_008437579.1	1.6e-142	85.44	PREDICTED: LOW QUALITY PROTEIN: polypyrimidine tract-binding protein homolog 2 [...	[more]
KAA0042561.1	8.7e-141	85.26	polypyrimidine tract-binding protein-like protein 2 [Cucumis melo var. makuwa]	[more]
XP_031741225.1	1.6e-139	83.91	polypyrimidine tract-binding protein homolog 2 [Cucumis sativus]	[more]

BLAST of HG10008911 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10008911 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C6J8	2.6e-143	85.44	Polypyrimidine tract-binding protein-like protein 2 OS=Cucumis melo var. makuwa ...	[more]
A0A1S3AUZ4	7.7e-143	85.44	LOW QUALITY PROTEIN: polypyrimidine tract-binding protein homolog 2 OS=Cucumis m...	[more]
A0A5A7TLW2	4.2e-141	85.26	Polypyrimidine tract-binding protein-like protein 2 OS=Cucumis melo var. makuwa ...	[more]
A0A0A0KJH6	7.9e-140	83.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139580 PE=4 SV=1	[more]
A0A6J1K7T0	7.7e-135	81.39	uncharacterized protein LOC111490949 OS=Cucurbita maxima OX=3661 GN=LOC111490949...	[more]

BLAST of HG10008911 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G24130.1	8.5e-86	53.12	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 286..305
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 286..317
None	No IPR available	PANTHER	PTHR34967	OS02G0257200 PROTEIN	coord: 1..316

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10008911.1	HG10008911.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003723	RNA binding