HG10008902 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10008902
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Succinate dehydrogenase assembly factor 4, mitochondrial
Location	Chr06: 611540 .. 611875 (+)
RNA-Seq Expression	HG10008902
Synteny	HG10008902

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAGCTATCTCAGCCGTCTATTCTCGTCGCCGCCGACTCTGTCTGCCCTACCGGCGGTGAGTCGCCTGACTTCCAACTCGTTGAGCCGATTCGTTAGCTCCTCGTCCAACCAACAGCCTTCTCCATCGGAGCAAGGTGTGTCCAGCGAAGAACATCGAGAGGCCGAGAAAGGAGGTTCGCTGAATCAACACGAGGCTGCCGGAGATGAACGAGATGGTGAAGATGAAGAAGTTGACACGAACGAAGCGCCCGTCGAGGTCGGTGGACCTAAAGGCCCCGAGCCCACCCGCTACGGCGATTGGGAACGAAAGGGTCGGTGCTACGATTTTTGA

mRNA sequence

ATGTCGAGCTATCTCAGCCGTCTATTCTCGTCGCCGCCGACTCTGTCTGCCCTACCGGCGGTGAGTCGCCTGACTTCCAACTCGTTGAGCCGATTCGTTAGCTCCTCGTCCAACCAACAGCCTTCTCCATCGGAGCAAGGTGTGTCCAGCGAAGAACATCGAGAGGCCGAGAAAGGAGGTTCGCTGAATCAACACGAGGCTGCCGGAGATGAACGAGATGGTGAAGATGAAGAAGTTGACACGAACGAAGCGCCCGTCGAGGTCGGTGGACCTAAAGGCCCCGAGCCCACCCGCTACGGCGATTGGGAACGAAAGGGTCGGTGCTACGATTTTTGA

Coding sequence (CDS)

ATGTCGAGCTATCTCAGCCGTCTATTCTCGTCGCCGCCGACTCTGTCTGCCCTACCGGCGGTGAGTCGCCTGACTTCCAACTCGTTGAGCCGATTCGTTAGCTCCTCGTCCAACCAACAGCCTTCTCCATCGGAGCAAGGTGTGTCCAGCGAAGAACATCGAGAGGCCGAGAAAGGAGGTTCGCTGAATCAACACGAGGCTGCCGGAGATGAACGAGATGGTGAAGATGAAGAAGTTGACACGAACGAAGCGCCCGTCGAGGTCGGTGGACCTAAAGGCCCCGAGCCCACCCGCTACGGCGATTGGGAACGAAAGGGTCGGTGCTACGATTTTTGA

Protein sequence

MSSYLSRLFSSPPTLSALPAVSRLTSNSLSRFVSSSSNQQPSPSEQGVSSEEHREAEKGGSLNQHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYGDWERKGRCYDF

Homology

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BLAST of HG10008902 vs. NCBI nr
Match: KAA0042555.1 (succinate dehydrogenase assembly factor 4 [Cucumis melo var. makuwa] >TYK05959.1 succinate dehydrogenase assembly factor 4 [Cucumis melo var. makuwa])

HSP 1 Score: 166.0 bits (419), Expect = 1.8e-37
Identity = 90/111 (81.08%), Postives = 96/111 (86.49%), Query Frame = 0


Query: 1   MSSYLSRLFSSPPTLSALPAVSRLTSNSLSRFVSSSSNQQPSPSEQGVSSEEHREAEKGG 60
           MSS+LSRLFSSPPTLSALP V RLTSNSLSRFVSSSSNQQPS SEQGVSSEE REAEKG 
Sbjct: 1   MSSHLSRLFSSPPTLSALPTVGRLTSNSLSRFVSSSSNQQPSRSEQGVSSEEQREAEKGS 60

Query: 61  SLNQHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYGDWERKGRCYDF 112
           S NQHEAAGD+R  +D+ VDT +   E+GGPKG EPTRYGDWER GRCYDF
Sbjct: 61  SPNQHEAAGDDRGSQDQGVDTEKMAPEIGGPKGHEPTRYGDWERNGRCYDF 111

[Close]

BLAST of HG10008902 vs. NCBI nr
Match: KGN49871.1 (hypothetical protein Csa_000062 [Cucumis sativus])

HSP 1 Score: 162.2 bits (409), Expect = 2.7e-36
Identity = 90/111 (81.08%), Postives = 96/111 (86.49%), Query Frame = 0


Query: 1   MSSYLSRLFSSPPTLSALPAVSRLTSNSLSRFVSSSSNQQPSPSEQGVSSEEHREAEKGG 60
           MSS LSRLFSSPPTLSALPAVSRLT NSLSRFVSSSSNQQPS  E+GVSSEE REA KG 
Sbjct: 1   MSSNLSRLFSSPPTLSALPAVSRLTFNSLSRFVSSSSNQQPSRLEKGVSSEEQREAGKGS 60

Query: 61  SLNQHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYGDWERKGRCYDF 112
           S N+HEAAGD+R G+DE VDT +   E+GGPKGPEPTRYGDWERKGRC DF
Sbjct: 61  SPNRHEAAGDDRGGQDEGVDTEKMTREIGGPKGPEPTRYGDWERKGRCSDF 111

[Close]

BLAST of HG10008902 vs. NCBI nr
Match: XP_022995844.1 (succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita maxima])

HSP 1 Score: 142.1 bits (357), Expect = 2.8e-30
Identity = 80/111 (72.07%), Postives = 90/111 (81.08%), Query Frame = 0


Query: 1   MSSYLSRLFSSPPTLSALPAVSRLTSNSLSRFVSSSSNQQPSPSEQGVSSEEHREAEKGG 60
           MSS L+RLF SPP+L+AL AV+R+TS S+SR VSSS+NQQPS  EQGV  EE REA KG 
Sbjct: 1   MSSNLTRLF-SPPSLTALSAVNRVTSTSVSRLVSSSANQQPSRLEQGVPGEEQREAGKGS 60

Query: 61  SLNQHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYGDWERKGRCYDF 112
             +QHEAAGD+RD EDE  D N+A  EVGGPKGPEPTRYGDWER GRCYDF
Sbjct: 61  LPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGDWERNGRCYDF 110

[Close]

BLAST of HG10008902 vs. NCBI nr
Match: XP_022957978.1 (succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita moschata])

HSP 1 Score: 140.2 bits (352), Expect = 1.1e-29
Identity = 80/111 (72.07%), Postives = 89/111 (80.18%), Query Frame = 0


Query: 1   MSSYLSRLFSSPPTLSALPAVSRLTSNSLSRFVSSSSNQQPSPSEQGVSSEEHREAEKGG 60
           MSS L+RLF SPP+L+AL AV+R TS S+SR VSSS+NQQPS  EQGV  EE REA KG 
Sbjct: 1   MSSNLTRLF-SPPSLTALSAVNRATSISVSRLVSSSANQQPSRLEQGVPGEEQREAGKGS 60

Query: 61  SLNQHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYGDWERKGRCYDF 112
             +QHEAAGD+RD EDE  D N+A  EVGGPKGPEPTRYGDWER GRCYDF
Sbjct: 61  LPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGDWERNGRCYDF 110

[Close]

BLAST of HG10008902 vs. NCBI nr
Match: XP_023532848.1 (succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 139.0 bits (349), Expect = 2.4e-29
Identity = 79/111 (71.17%), Postives = 89/111 (80.18%), Query Frame = 0


Query: 1   MSSYLSRLFSSPPTLSALPAVSRLTSNSLSRFVSSSSNQQPSPSEQGVSSEEHREAEKGG 60
           MSS L+RLF SPP+L++L AV+R TS S+SR VSSS+NQQPS  EQGV  EE REA KG 
Sbjct: 1   MSSNLTRLF-SPPSLTSLSAVNRATSISVSRLVSSSANQQPSRLEQGVPGEEQREAGKGS 60

Query: 61  SLNQHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYGDWERKGRCYDF 112
             +QHEAAGD+RD EDE  D N+A  EVGGPKGPEPTRYGDWER GRCYDF
Sbjct: 61  LPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGDWERNGRCYDF 110

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BLAST of HG10008902 vs. ExPASy Swiss-Prot
Match: Q9VLU6 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Drosophila melanogaster OX=7227 GN=Sirup PE=3 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 1.3e-06
Identity = 23/31 (74.19%), Postives = 24/31 (77.42%), Query Frame = 0


Query: 81  TNEAPVEVGGPKGPEPTRYGDWERKGRCYDF 112
           TN    E+GGP GPEPTRYGDWERKGR  DF
Sbjct: 88  TNPYTGEIGGPAGPEPTRYGDWERKGRVSDF 118

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BLAST of HG10008902 vs. ExPASy Swiss-Prot
Match: Q5VUM1 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Homo sapiens OX=9606 GN=SDHAF4 PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 2.5e-05
Identity = 33/74 (44.59%), Postives = 40/74 (54.05%), Query Frame = 0


Query: 44  SEQGVSSEEHREAEKGGSLNQHEAAGDERDGEDEEV------DTNEAPVEVGGPKGPEPT 103
           S QG  SE  +++ K   L +      E    ++E       D N    E GGP+GPEPT
Sbjct: 35  SSQGGKSELVKQSLKKPKLPEGRFDAPEDSHLEKEPLEKFPDDVNPVTKEKGGPRGPEPT 94

Query: 104 RYGDWERKGRCYDF 112
           RYGDWERKGRC DF
Sbjct: 95  RYGDWERKGRCIDF 108

[Close]

BLAST of HG10008902 vs. ExPASy Swiss-Prot
Match: Q8BTE0 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Mus musculus OX=10090 GN=Sdhaf4 PE=3 SV=2)

HSP 1 Score: 48.5 bits (114), Expect = 5.6e-05
Identity = 36/89 (40.45%), Postives = 49/89 (55.06%), Query Frame = 0


Query: 24  LTSNSLSRFVSSSSNQQPSPSEQGVSSEEHREAEKGGSLNQHEAAGDERDG-EDEEVDTN 83
           L ++SL +   S    +P P++Q +     +     G  +  E + +ER+  +    D N
Sbjct: 22  LLNHSLRKM--SYQEGKPEPAKQALK----KSKLPLGRFDSLEDSPEEREPLQKFPDDVN 81

Query: 84  EAPVEVGGPKGPEPTRYGDWERKGRCYDF 112
               E GGPKGPEPTRYGDWERKGRC DF
Sbjct: 82  PVTKEKGGPKGPEPTRYGDWERKGRCIDF 104

[Close]

BLAST of HG10008902 vs. ExPASy TrEMBL
Match: A0A5A7TMD3 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00530 PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 8.9e-38
Identity = 90/111 (81.08%), Postives = 96/111 (86.49%), Query Frame = 0


Query: 1   MSSYLSRLFSSPPTLSALPAVSRLTSNSLSRFVSSSSNQQPSPSEQGVSSEEHREAEKGG 60
           MSS+LSRLFSSPPTLSALP V RLTSNSLSRFVSSSSNQQPS SEQGVSSEE REAEKG 
Sbjct: 1   MSSHLSRLFSSPPTLSALPTVGRLTSNSLSRFVSSSSNQQPSRSEQGVSSEEQREAEKGS 60

Query: 61  SLNQHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYGDWERKGRCYDF 112
           S NQHEAAGD+R  +D+ VDT +   E+GGPKG EPTRYGDWER GRCYDF
Sbjct: 61  SPNQHEAAGDDRGSQDQGVDTEKMAPEIGGPKGHEPTRYGDWERNGRCYDF 111

[Close]

BLAST of HG10008902 vs. ExPASy TrEMBL
Match: A0A0A0KQ66 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Cucumis sativus OX=3659 GN=Csa_5G139490 PE=3 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.3e-36
Identity = 90/111 (81.08%), Postives = 96/111 (86.49%), Query Frame = 0


Query: 1   MSSYLSRLFSSPPTLSALPAVSRLTSNSLSRFVSSSSNQQPSPSEQGVSSEEHREAEKGG 60
           MSS LSRLFSSPPTLSALPAVSRLT NSLSRFVSSSSNQQPS  E+GVSSEE REA KG 
Sbjct: 1   MSSNLSRLFSSPPTLSALPAVSRLTFNSLSRFVSSSSNQQPSRLEKGVSSEEQREAGKGS 60

Query: 61  SLNQHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYGDWERKGRCYDF 112
           S N+HEAAGD+R G+DE VDT +   E+GGPKGPEPTRYGDWERKGRC DF
Sbjct: 61  SPNRHEAAGDDRGGQDEGVDTEKMTREIGGPKGPEPTRYGDWERKGRCSDF 111

[Close]

BLAST of HG10008902 vs. ExPASy TrEMBL
Match: A0A6J1K722 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111491251 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.4e-30
Identity = 80/111 (72.07%), Postives = 90/111 (81.08%), Query Frame = 0


Query: 1   MSSYLSRLFSSPPTLSALPAVSRLTSNSLSRFVSSSSNQQPSPSEQGVSSEEHREAEKGG 60
           MSS L+RLF SPP+L+AL AV+R+TS S+SR VSSS+NQQPS  EQGV  EE REA KG 
Sbjct: 1   MSSNLTRLF-SPPSLTALSAVNRVTSTSVSRLVSSSANQQPSRLEQGVPGEEQREAGKGS 60

Query: 61  SLNQHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYGDWERKGRCYDF 112
             +QHEAAGD+RD EDE  D N+A  EVGGPKGPEPTRYGDWER GRCYDF
Sbjct: 61  LPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGDWERNGRCYDF 110

[Close]

BLAST of HG10008902 vs. ExPASy TrEMBL
Match: A0A6J1H1T7 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111459345 PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 5.2e-30
Identity = 80/111 (72.07%), Postives = 89/111 (80.18%), Query Frame = 0


Query: 1   MSSYLSRLFSSPPTLSALPAVSRLTSNSLSRFVSSSSNQQPSPSEQGVSSEEHREAEKGG 60
           MSS L+RLF SPP+L+AL AV+R TS S+SR VSSS+NQQPS  EQGV  EE REA KG 
Sbjct: 1   MSSNLTRLF-SPPSLTALSAVNRATSISVSRLVSSSANQQPSRLEQGVPGEEQREAGKGS 60

Query: 61  SLNQHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYGDWERKGRCYDF 112
             +QHEAAGD+RD EDE  D N+A  EVGGPKGPEPTRYGDWER GRCYDF
Sbjct: 61  LPDQHEAAGDDRDSEDEGADVNKATGEVGGPKGPEPTRYGDWERNGRCYDF 110

[Close]

BLAST of HG10008902 vs. ExPASy TrEMBL
Match: I3S0H7 (Succinate dehydrogenase assembly factor 4, mitochondrial OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 7.1e-11
Identity = 47/108 (43.52%), Postives = 67/108 (62.04%), Query Frame = 0


Query: 4   YLSRLFSSPPTLSALPAVSRLTSNSLSRFVSSSSNQQPSPSEQGVSSEEHREAEKGGSLN 63
           +LS + +   T +    ++R  SNS++RF+ SSS QQ + +     ++E RE+    S  
Sbjct: 8   WLSSVANPALTRTGSEQLTRSVSNSVTRFLCSSSTQQHTENPVTEQAQEPRESLPDESKQ 67

Query: 64  QHEAAGDERDGEDEEVDTNEAPVEVGGPKGPEPTRYGDWERKGRCYDF 112
             E   +E + +D++VD N+   EVGGPKGPEPTRYGDWER GRC DF
Sbjct: 68  TREGEEEEGEDDDDDVDVNKETGEVGGPKGPEPTRYGDWERNGRCSDF 115

[Close]

BLAST of HG10008902 vs. TAIR 10
Match: AT5G67490.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1674 (InterPro:IPR012875); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 52.0 bits (123), Expect = 3.6e-07
Identity = 37/96 (38.54%), Postives = 53/96 (55.21%), Query Frame = 0


Query: 20  AVSRLTSNSLSRFVSSSSNQQPSPSEQGVSSEEHREAEKGGSLNQHEAAGDERDGEDEEV 79
           +VS      +SRF+SS +   P P     + + +R+ +   +L Q+     E + E E  
Sbjct: 15  SVSSRFLEPVSRFLSSGT--PPPPQAPSPNQDLNRDVKPDQNLQQNLQMQKEEEEEGEGG 74

Query: 80  D----TNEAPVEVGGPKGPEPTRYGDWERKGRCYDF 112
                 NE   E+GGP+GPEPTRYGDWE++GRC DF
Sbjct: 75  GGGEFVNEDTGEIGGPRGPEPTRYGDWEQRGRCSDF 108

The following BLAST results are available for this feature:

BLAST of HG10008902 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0042555.1	1.8e-37	81.08	succinate dehydrogenase assembly factor 4 [Cucumis melo var. makuwa] >TYK05959.1...	[more]
KGN49871.1	2.7e-36	81.08	hypothetical protein Csa_000062 [Cucumis sativus]	[more]
XP_022995844.1	2.8e-30	72.07	succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita maxima]	[more]
XP_022957978.1	1.1e-29	72.07	succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita moschata]	[more]
XP_023532848.1	2.4e-29	71.17	succinate dehydrogenase assembly factor 4, mitochondrial [Cucurbita pepo subsp. ...	[more]

BLAST of HG10008902 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9VLU6	1.3e-06	74.19	Succinate dehydrogenase assembly factor 4, mitochondrial OS=Drosophila melanogas...	[more]
Q5VUM1	2.5e-05	44.59	Succinate dehydrogenase assembly factor 4, mitochondrial OS=Homo sapiens OX=9606...	[more]
Q8BTE0	5.6e-05	40.45	Succinate dehydrogenase assembly factor 4, mitochondrial OS=Mus musculus OX=1009...	[more]

BLAST of HG10008902 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TMD3	8.9e-38	81.08	Succinate dehydrogenase assembly factor 4, mitochondrial OS=Cucumis melo var. ma...	[more]
A0A0A0KQ66	1.3e-36	81.08	Succinate dehydrogenase assembly factor 4, mitochondrial OS=Cucumis sativus OX=3...	[more]
A0A6J1K722	1.4e-30	72.07	Succinate dehydrogenase assembly factor 4, mitochondrial OS=Cucurbita maxima OX=...	[more]
A0A6J1H1T7	5.2e-30	72.07	Succinate dehydrogenase assembly factor 4, mitochondrial OS=Cucurbita moschata O...	[more]
I3S0H7	7.1e-11	43.52	Succinate dehydrogenase assembly factor 4, mitochondrial OS=Lotus japonicus OX=3...	[more]

BLAST of HG10008902 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G67490.1	3.6e-07	38.54	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1674...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012875	Succinate dehydrogenase assembly factor 4	PFAM	PF07896	DUF1674	coord: 61..111 e-value: 7.8E-16 score: 58.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..111
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..111
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..70
None	No IPR available	PANTHER	PTHR28524	SUCCINATE DEHYDROGENASE ASSEMBLY FACTOR 4, MITOCHONDRIAL	coord: 1..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10008902.1	HG10008902.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034553	mitochondrial respiratory chain complex II assembly
cellular_component	GO:0005739	mitochondrion