HG10008888 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10008888
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionprotein PSY2
LocationChr06: 496073 .. 496412 (-)
RNA-Seq ExpressionHG10008888
SyntenyHG10008888
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGAACCACTTCGAGACGTTAAGATTGCATACAAGTCAATCTTCAAGGTATTCAGAAGTAGTCCTTGAAAAATTATGTTGATTTTAATAGTGTTCTTTAAAAAGAGAAAAACCAAACAATAAAAAATACTAGCACAAGTAGTTTCCATAAGTTCAACTTTTATAAATAAGCAGATCATGAAATGTTTTTTATATTCTTTTTCTTTTCCAATGTGAAAAGGTTGGTGGCATCCAAATGAATGCAAGGAAGCTTATGACACTCGACGTACAAGACTATGATGAGACCAAAGCAAATAATAGACACGATCCGAAGAAGCCTGGAAATGGAAAGCCTTGA

mRNA sequence

ATGGTTGAACCACTTCGAGACGTTAAGATTGCATACAAGTCAATCTTCAAGGTTGGTGGCATCCAAATGAATGCAAGGAAGCTTATGACACTCGACGTACAAGACTATGATGAGACCAAAGCAAATAATAGACACGATCCGAAGAAGCCTGGAAATGGAAAGCCTTGA

Coding sequence (CDS)

ATGGTTGAACCACTTCGAGACGTTAAGATTGCATACAAGTCAATCTTCAAGGTTGGTGGCATCCAAATGAATGCAAGGAAGCTTATGACACTCGACGTACAAGACTATGATGAGACCAAAGCAAATAATAGACACGATCCGAAGAAGCCTGGAAATGGAAAGCCTTGA

Protein sequence

MVEPLRDVKIAYKSIFKVGGIQMNARKLMTLDVQDYDETKANNRHDPKKPGNGKP
Homology
BLAST of HG10008888 vs. NCBI nr
Match: XP_038906524.1 (protein PSY2-like [Benincasa hispida])

HSP 1 Score: 104.4 bits (259), Expect = 3.3e-19
Identity = 50/55 (90.91%), Postives = 51/55 (92.73%), Query Frame = 0

Query: 1  MVEPLRDVKIAYKSIFKVGGIQMNARKLMTLDVQDYDETKANNRHDPKKPGNGKP 56
          MVEPLRD+KI  KSI KVG IQMNARKLMTLDVQDYDETKANNRHDPKKPGNGKP
Sbjct: 23 MVEPLRDIKITEKSIIKVGSIQMNARKLMTLDVQDYDETKANNRHDPKKPGNGKP 77

BLAST of HG10008888 vs. NCBI nr
Match: KGN49855.1 (hypothetical protein Csa_000412 [Cucumis sativus])

HSP 1 Score: 104.0 bits (258), Expect = 4.2e-19
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 0

Query: 1  MVEPLRDVKIAYKSIFKVGGIQMNARKLMTLDVQDYDETKANNRHDPKKPGNGKP 56
          +VEPLRD  IAYKSIFK+GGIQMN RKLMTLD+QDYDETKANNRHDPKKPGNGKP
Sbjct: 25 VVEPLRDDMIAYKSIFKMGGIQMNGRKLMTLDLQDYDETKANNRHDPKKPGNGKP 79

BLAST of HG10008888 vs. NCBI nr
Match: XP_022138250.1 (protein PSY2 [Momordica charantia])

HSP 1 Score: 99.8 bits (247), Expect = 8.0e-18
Identity = 50/56 (89.29%), Postives = 52/56 (92.86%), Query Frame = 0

Query: 1  MVEPLRDVKIAYKSIFKVGG-IQMNARKLMTLDVQDYDETKANNRHDPKKPGNGKP 56
          M +PLRD KIA KSIFKVGG IQMNARKLMTLD+QDYDETKANNRHDPKKPGNGKP
Sbjct: 25 MDKPLRDTKIADKSIFKVGGIIQMNARKLMTLDIQDYDETKANNRHDPKKPGNGKP 80

BLAST of HG10008888 vs. NCBI nr
Match: TYK05946.1 (putative Adenosylcobalamin-dependent ribonucleoside-triphosphate reductase [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 1.5e-16
Identity = 45/55 (81.82%), Postives = 49/55 (89.09%), Query Frame = 0

Query: 1  MVEPLRDVKIAYKSIFKVGGIQMNARKLMTLDVQDYDETKANNRHDPKKPGNGKP 56
          +VE L+D  IA KS FK+GG+QMN RKLMTLDVQDYDETKANNRHDPKKPGNGKP
Sbjct: 2  VVESLQDGNIADKSAFKIGGVQMNGRKLMTLDVQDYDETKANNRHDPKKPGNGKP 56

BLAST of HG10008888 vs. NCBI nr
Match: XP_023550102.1 (protein PSY2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 91.7 bits (226), Expect = 2.2e-15
Identity = 41/55 (74.55%), Postives = 49/55 (89.09%), Query Frame = 0

Query: 1  MVEPLRDVKIAYKSIFKVGGIQMNARKLMTLDVQDYDETKANNRHDPKKPGNGKP 56
          MVE +RDVK+A K+I+ VGG+ MN RKLM LD++DYD+TKANNRHDPKKPGNGKP
Sbjct: 25 MVESVRDVKVADKAIYMVGGVGMNGRKLMRLDIEDYDDTKANNRHDPKKPGNGKP 79

BLAST of HG10008888 vs. ExPASy TrEMBL
Match: A0A0A0KJF2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139330 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.1e-19
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = 0

Query: 1  MVEPLRDVKIAYKSIFKVGGIQMNARKLMTLDVQDYDETKANNRHDPKKPGNGKP 56
          +VEPLRD  IAYKSIFK+GGIQMN RKLMTLD+QDYDETKANNRHDPKKPGNGKP
Sbjct: 25 VVEPLRDDMIAYKSIFKMGGIQMNGRKLMTLDLQDYDETKANNRHDPKKPGNGKP 79

BLAST of HG10008888 vs. ExPASy TrEMBL
Match: A0A6J1C8Y2 (protein PSY2 OS=Momordica charantia OX=3673 GN=LOC111009471 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.9e-18
Identity = 50/56 (89.29%), Postives = 52/56 (92.86%), Query Frame = 0

Query: 1  MVEPLRDVKIAYKSIFKVGG-IQMNARKLMTLDVQDYDETKANNRHDPKKPGNGKP 56
          M +PLRD KIA KSIFKVGG IQMNARKLMTLD+QDYDETKANNRHDPKKPGNGKP
Sbjct: 25 MDKPLRDTKIADKSIFKVGGIIQMNARKLMTLDIQDYDETKANNRHDPKKPGNGKP 80

BLAST of HG10008888 vs. ExPASy TrEMBL
Match: A0A5D3C6H5 (Putative Adenosylcobalamin-dependent ribonucleoside-triphosphate reductase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00390 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 7.3e-17
Identity = 45/55 (81.82%), Postives = 49/55 (89.09%), Query Frame = 0

Query: 1  MVEPLRDVKIAYKSIFKVGGIQMNARKLMTLDVQDYDETKANNRHDPKKPGNGKP 56
          +VE L+D  IA KS FK+GG+QMN RKLMTLDVQDYDETKANNRHDPKKPGNGKP
Sbjct: 2  VVESLQDGNIADKSAFKIGGVQMNGRKLMTLDVQDYDETKANNRHDPKKPGNGKP 56

BLAST of HG10008888 vs. ExPASy TrEMBL
Match: A0A6J1E2S8 (protein PSY2-like OS=Cucurbita moschata OX=3662 GN=LOC111430273 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.2e-13
Identity = 39/55 (70.91%), Postives = 46/55 (83.64%), Query Frame = 0

Query: 1  MVEPLRDVKIAYKSIFKVGGIQMNARKLMTLDVQDYDETKANNRHDPKKPGNGKP 56
          +VE  R+VK+  K I+ VGG+ MN RKLM LDV+DYD+TKANNRHDPKKPGNGKP
Sbjct: 25 VVESGRNVKVTDKVIYMVGGVGMNGRKLMRLDVEDYDDTKANNRHDPKKPGNGKP 79

BLAST of HG10008888 vs. ExPASy TrEMBL
Match: A0A6J1H1E3 (uncharacterized protein LOC111459477 OS=Cucurbita moschata OX=3662 GN=LOC111459477 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.9e-10
Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 0

Query: 1  MVEPLRDVKIAYKSIFKVGGIQMNARKLMTLDVQDYDETKANNRHDPKKPGNGKP 56
          MV+PL DV+IA  SIFKV G Q+ ARKL  LD+ DYD+ +ANNRHDPK+PGNGKP
Sbjct: 26 MVDPLVDVEIADNSIFKVYGFQLKARKL-ALDI-DYDDPRANNRHDPKRPGNGKP 78

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038906524.13.3e-1990.91protein PSY2-like [Benincasa hispida][more]
KGN49855.14.2e-1989.09hypothetical protein Csa_000412 [Cucumis sativus][more]
XP_022138250.18.0e-1889.29protein PSY2 [Momordica charantia][more]
TYK05946.11.5e-1681.82putative Adenosylcobalamin-dependent ribonucleoside-triphosphate reductase [Cucu... [more]
XP_023550102.12.2e-1574.55protein PSY2-like [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KJF22.1e-1989.09Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139330 PE=4 SV=1[more]
A0A6J1C8Y23.9e-1889.29protein PSY2 OS=Momordica charantia OX=3673 GN=LOC111009471 PE=4 SV=1[more]
A0A5D3C6H57.3e-1781.82Putative Adenosylcobalamin-dependent ribonucleoside-triphosphate reductase OS=Cu... [more]
A0A6J1E2S82.2e-1370.91protein PSY2-like OS=Cucurbita moschata OX=3662 GN=LOC111430273 PE=4 SV=1[more]
A0A6J1H1E33.9e-1069.09uncharacterized protein LOC111459477 OS=Cucurbita moschata OX=3662 GN=LOC1114594... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10008888.1HG10008888.1mRNA