HG10008884 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10008884
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Unknown protein
Location	Chr06: 460807 .. 461070 (-)
RNA-Seq Expression	HG10008884
Synteny	HG10008884

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAATCAGAGCACCTGCTTGTCCTACGAGAAGCTCAACGGAATGGCCACATGGGTCGGAACCAGCGTCGCCTCCGCCTTCTTCGCTTCTCTTGAGCGATGTTCCTGCATCAATCTCTCCACCTCCGACGACCACGAAGATCCTGAAGAGGCTCATGATCGCCCTCTCATGTACTGCACCTCCACTTCTTCCTCCGTCATCATTCGCAGCTTCGAACCGCTTCCTCCTCCGGTCAATGATGTCGCCAATCTCCCCGTCTGA

mRNA sequence

ATGGAGAATCAGAGCACCTGCTTGTCCTACGAGAAGCTCAACGGAATGGCCACATGGGTCGGAACCAGCGTCGCCTCCGCCTTCTTCGCTTCTCTTGAGCGATGTTCCTGCATCAATCTCTCCACCTCCGACGACCACGAAGATCCTGAAGAGGCTCATGATCGCCCTCTCATGTACTGCACCTCCACTTCTTCCTCCGTCATCATTCGCAGCTTCGAACCGCTTCCTCCTCCGGTCAATGATGTCGCCAATCTCCCCGTCTGA

Coding sequence (CDS)

ATGGAGAATCAGAGCACCTGCTTGTCCTACGAGAAGCTCAACGGAATGGCCACATGGGTCGGAACCAGCGTCGCCTCCGCCTTCTTCGCTTCTCTTGAGCGATGTTCCTGCATCAATCTCTCCACCTCCGACGACCACGAAGATCCTGAAGAGGCTCATGATCGCCCTCTCATGTACTGCACCTCCACTTCTTCCTCCGTCATCATTCGCAGCTTCGAACCGCTTCCTCCTCCGGTCAATGATGTCGCCAATCTCCCCGTCTGA

Protein sequence

MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYCTSTSSSVIIRSFEPLPPPVNDVANLPV

Homology

[Close]

BLAST of HG10008884 vs. NCBI nr
Match: XP_008437637.1 (PREDICTED: uncharacterized protein LOC103482984 [Cucumis melo] >XP_008437638.1 PREDICTED: uncharacterized protein LOC103482984 [Cucumis melo] >XP_008437639.1 PREDICTED: uncharacterized protein LOC103482984 [Cucumis melo] >XP_008437640.1 PREDICTED: uncharacterized protein LOC103482984 [Cucumis melo])

HSP 1 Score: 179.9 bits (455), Expect = 9.6e-42
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1   MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC 60
           MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC
Sbjct: 34  MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC 93

Query: 61  TSTSSSVIIRSFEPLPPPVNDVANLPV 88
           TSTSSSV+IRSFEPLPPPVNDVANLPV
Sbjct: 94  TSTSSSVVIRSFEPLPPPVNDVANLPV 120

[Close]

BLAST of HG10008884 vs. NCBI nr
Match: XP_022137766.1 (uncharacterized protein LOC111009130 [Momordica charantia] >XP_022137767.1 uncharacterized protein LOC111009130 [Momordica charantia] >XP_022137768.1 uncharacterized protein LOC111009130 [Momordica charantia])

HSP 1 Score: 177.9 bits (450), Expect = 3.7e-41
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC 60
          MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC
Sbjct: 1  MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC 60

Query: 61 TSTSSSVIIRSFEPLPPPVNDVANLPV 88
           STSSSV+IRSFEPLPPPVNDVANLPV
Sbjct: 61 NSTSSSVVIRSFEPLPPPVNDVANLPV 87

[Close]

BLAST of HG10008884 vs. NCBI nr
Match: XP_038875439.1 (uncharacterized protein LOC120067894 [Benincasa hispida] >XP_038875440.1 uncharacterized protein LOC120067894 [Benincasa hispida] >XP_038875441.1 uncharacterized protein LOC120067894 [Benincasa hispida] >XP_038875442.1 uncharacterized protein LOC120067894 [Benincasa hispida])

HSP 1 Score: 176.8 bits (447), Expect = 8.2e-41
Identity = 84/87 (96.55%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1   MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC 60
           MENQSTCLSYEKLNG+A+WVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC
Sbjct: 31  MENQSTCLSYEKLNGVASWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC 90

Query: 61  TSTSSSVIIRSFEPLPPPVNDVANLPV 88
           TSTSSSV+IRSFEPLPPPVNDVANLPV
Sbjct: 91  TSTSSSVVIRSFEPLPPPVNDVANLPV 117

[Close]

BLAST of HG10008884 vs. NCBI nr
Match: XP_011654597.1 (uncharacterized protein LOC101207351 isoform X1 [Cucumis sativus] >XP_011654598.1 uncharacterized protein LOC101207351 isoform X1 [Cucumis sativus] >XP_011654599.1 uncharacterized protein LOC101207351 isoform X1 [Cucumis sativus] >XP_011654600.1 uncharacterized protein LOC101207351 isoform X1 [Cucumis sativus] >XP_031742147.1 uncharacterized protein LOC101207351 isoform X1 [Cucumis sativus] >KAE8647797.1 hypothetical protein Csa_000040 [Cucumis sativus])

HSP 1 Score: 174.1 bits (440), Expect = 5.3e-40
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1   MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC 60
           MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC
Sbjct: 40  MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC 99

Query: 61  TSTSSSVIIRSFEPLPPPVNDVANLPV 88
           TSTSSSV IRSFEPLPPPVNDVANLPV
Sbjct: 100 TSTSSSV-IRSFEPLPPPVNDVANLPV 125

[Close]

BLAST of HG10008884 vs. NCBI nr
Match: XP_031742148.1 (uncharacterized protein LOC101207351 isoform X2 [Cucumis sativus])

HSP 1 Score: 174.1 bits (440), Expect = 5.3e-40
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1   MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC 60
           MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC
Sbjct: 39  MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC 98

Query: 61  TSTSSSVIIRSFEPLPPPVNDVANLPV 88
           TSTSSSV IRSFEPLPPPVNDVANLPV
Sbjct: 99  TSTSSSV-IRSFEPLPPPVNDVANLPV 124

[Close]

BLAST of HG10008884 vs. ExPASy TrEMBL
Match: A0A1S3AU63 (uncharacterized protein LOC103482984 OS=Cucumis melo OX=3656 GN=LOC103482984 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 4.7e-42
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1   MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC 60
           MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC
Sbjct: 34  MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC 93

Query: 61  TSTSSSVIIRSFEPLPPPVNDVANLPV 88
           TSTSSSV+IRSFEPLPPPVNDVANLPV
Sbjct: 94  TSTSSSVVIRSFEPLPPPVNDVANLPV 120

[Close]

BLAST of HG10008884 vs. ExPASy TrEMBL
Match: A0A6J1C970 (uncharacterized protein LOC111009130 OS=Momordica charantia OX=3673 GN=LOC111009130 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.8e-41
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC 60
          MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC
Sbjct: 1  MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC 60

Query: 61 TSTSSSVIIRSFEPLPPPVNDVANLPV 88
           STSSSV+IRSFEPLPPPVNDVANLPV
Sbjct: 61 NSTSSSVVIRSFEPLPPPVNDVANLPV 87

[Close]

BLAST of HG10008884 vs. ExPASy TrEMBL
Match: A0A0A0KLU3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139175 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.6e-40
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC 60
          MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC
Sbjct: 1  MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC 60

Query: 61 TSTSSSVIIRSFEPLPPPVNDVANLPV 88
          TSTSSSV IRSFEPLPPPVNDVANLPV
Sbjct: 61 TSTSSSV-IRSFEPLPPPVNDVANLPV 86

[Close]

BLAST of HG10008884 vs. ExPASy TrEMBL
Match: A0A6J1E5Z9 (uncharacterized protein LOC111430272 OS=Cucurbita moschata OX=3662 GN=LOC111430272 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 8.2e-39
Identity = 83/87 (95.40%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 1  MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC 60
          MENQSTCLSYEKLNG+ATWVGTSVASAFFASLE CSCINLSTSDDHEDP+EAHDRPLMYC
Sbjct: 1  MENQSTCLSYEKLNGVATWVGTSVASAFFASLESCSCINLSTSDDHEDPDEAHDRPLMYC 60

Query: 61 TSTSSSVIIRSFEPLPPPVNDVANLPV 88
          TSTSSSV IRSFEPLPPPVNDVANLPV
Sbjct: 61 TSTSSSV-IRSFEPLPPPVNDVANLPV 86

[Close]

BLAST of HG10008884 vs. ExPASy TrEMBL
Match: A0A6J1ID63 (uncharacterized protein LOC111471501 OS=Cucurbita maxima OX=3661 GN=LOC111471501 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.8e-38
Identity = 82/87 (94.25%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 1  MENQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPLMYC 60
          MENQSTCL+YEKLNG+ATWVGTSVASAFFASLE CSCINLSTSDDHEDP+EAHDRPLMYC
Sbjct: 1  MENQSTCLTYEKLNGVATWVGTSVASAFFASLESCSCINLSTSDDHEDPDEAHDRPLMYC 60

Query: 61 TSTSSSVIIRSFEPLPPPVNDVANLPV 88
          TSTSSS IIRSFEPLPPPVNDVANLPV
Sbjct: 61 TSTSSS-IIRSFEPLPPPVNDVANLPV 86

[Close]

BLAST of HG10008884 vs. TAIR 10
Match: AT4G10810.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G24026.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 73.9 bits (180), Expect = 6.9e-14
Identity = 37/55 (67.27%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 3  NQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTSDDHEDPEEAHDRPL 58
          N ST  S EKL+  A+WV T+V SAFFASLERCSC+NLSTSDD ++ EE+H+RPL
Sbjct: 16 NLSTA-SLEKLDQAASWVSTTVISAFFASLERCSCVNLSTSDDDDEGEESHNRPL 69

[Close]

BLAST of HG10008884 vs. TAIR 10
Match: AT4G24026.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 67.4 bits (163), Expect = 6.5e-12
Identity = 32/57 (56.14%), Postives = 42/57 (73.68%), Query Frame = 0


Query: 3  NQSTCLSYEKLNGMATWVGTSVASAFFASLERCSCINLSTS--DDHEDPEEAHDRPL 58
          N ST  S EK++  A+W+  +V SAFF SLERC+C+NLSTS  DD +D +E+H RPL
Sbjct: 10 NVSTTTSMEKIDHAASWISATVISAFFTSLERCACVNLSTSHDDDDDDDDESHHRPL 66

The following BLAST results are available for this feature:

BLAST of HG10008884 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008437637.1	9.6e-42	98.85	PREDICTED: uncharacterized protein LOC103482984 [Cucumis melo] >XP_008437638.1 P...	[more]
XP_022137766.1	3.7e-41	97.70	uncharacterized protein LOC111009130 [Momordica charantia] >XP_022137767.1 uncha...	[more]
XP_038875439.1	8.2e-41	96.55	uncharacterized protein LOC120067894 [Benincasa hispida] >XP_038875440.1 unchara...	[more]
XP_011654597.1	5.3e-40	98.85	uncharacterized protein LOC101207351 isoform X1 [Cucumis sativus] >XP_011654598....	[more]
XP_031742148.1	5.3e-40	98.85	uncharacterized protein LOC101207351 isoform X2 [Cucumis sativus]	[more]

BLAST of HG10008884 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10008884 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3AU63	4.7e-42	98.85	uncharacterized protein LOC103482984 OS=Cucumis melo OX=3656 GN=LOC103482984 PE=...	[more]
A0A6J1C970	1.8e-41	97.70	uncharacterized protein LOC111009130 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]
A0A0A0KLU3	2.6e-40	98.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139175 PE=4 SV=1	[more]
A0A6J1E5Z9	8.2e-39	95.40	uncharacterized protein LOC111430272 OS=Cucurbita moschata OX=3662 GN=LOC1114302...	[more]
A0A6J1ID63	1.8e-38	94.25	uncharacterized protein LOC111471501 OS=Cucurbita maxima OX=3661 GN=LOC111471501...	[more]

BLAST of HG10008884 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G10810.1	6.9e-14	67.27	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G24026.1	6.5e-12	56.14	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34061:SF19	OS10G0502100 PROTEIN	coord: 2..63
None	No IPR available	PANTHER	PTHR34061	PROTEIN, PUTATIVE-RELATED	coord: 2..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10008884.1	HG10008884.1	mRNA