HG10008870 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10008870
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Ubiquitin
Location	Chr06: 365415 .. 366848 (+)
RNA-Seq Expression	HG10008870
Synteny	HG10008870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGATCTTCGTCAAAACCCTAACGGGGAAGACTATTACGCTGGAAGTCGAGTCCAGCGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTACGTCAATATTTTTGCCTTCGGATTTTTCATTCTTTATTCAAGCGACGCATCTTTGATTCATTCTGTTGTTTATTTTGGTTTATGCTGCAAACTCTCCAGGTATTCCCCCCGACCAGCAACGGCTTATCTTTGCCGGAAAGCAGCTCGAGGATGGTCGCACTCTCGCCGATTACAACATCCAGAAAGGTAGATTTTAGTTAAGTTTTATGTAGCATACGAATTAGACGAGGATAATTTAGCTGAAATCAATGCTATAGATTCGCCCGGTGGCGTTATTCGCTTTCCGATTCCCTTAATTTATGAATGTCACTGGCATACGAGTCCGGACAATGAATTTTTATGAGATAGACATCAAACTGAGAGACATTAGCGAGACTTCGTACTAGTATTCATCTTAAATCTATAGGCAGCGTGTAGAATGAATTTCTGCTGGTGTCTGATTGTTTAATGGTTGCCTGTTATACGAAATCTGTAGTAGTGTCCAGTGGGATGTCATGGGAACATGCGGTTTTTAGAGTTGGCTGATTGGAAATTCGAAGACATCCTTGCACTTTTGCCTATAAATCGATAGAACTACTTTGTGAATGAACTATAGTTTTCTTTGCTTTCTCACTATTAAATTAAATGTATGTTCAGAATCAACGCTACACCTCGTTCTAAGGCTTCGTGGTGGGATTATTGAGCCATCTTTGATGGCATTGGCCAGAAAATATAACCAGGACAAGATGATCTGCCGCAAGTACGTTATTTTTTTGTTCTTGGTATTTTCTCATTCTAGATGTAGGACTGCTGATATATCGTATATGAACTGAAACAACTGACTAATTGAAGAACTCGATCCGAAGATTTCAAACTGACTGGTCTTTTTTATTTCTTTTGTAGTTTGTAGTTTGGTTTGGTTTGAATAATTGAACGAATCATTGGTTTGGAATAATGTTTAGGTTGGGTCTCAAAACCCAAAAATTCGAAACACGACTTTATCAGACACAATTAAAAAAAATTAAACTTAAAATGGAAAACCAATGCGTTTCAGTTCGTTTTTTTTATCAGTTTGGTTTAGTCGTAATATGAAAAAAATGTTAGGAAATTGGTTCAGTTTTCACGTTGGTCAAAATTTGGCCATGACGTATCAAAATGAACACACTCCCAGGTGAAAGTCTTGGAGTTTGATAGAATGTGTTTCTGAAGTTTTTTCTTCTATCTTCGGCTACAGATGTTATGCACGCCTGCATCCCCGTGCTGTCAACTGCCGTAAGAAGAAATGTGGTCACAGCAATCAGGTAAAGGATATTATTATTAGTAAGGCGATTGATTTCATTCTTTGCTAA

mRNA sequence

ATGCAGATCTTCGTCAAAACCCTAACGGGGAAGACTATTACGCTGGAAGTCGAGTCCAGCGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCCGACCAGCAACGGCTTATCTTTGCCGGAAAGCAGCTCGAGGATGGTCGCACTCTCGCCGATTACAACATCCAGAAAGAATCAACGCTACACCTCGTTCTAAGGCTTCGTGGTGGGATTATTGAGCCATCTTTGATGGCATTGGCCAGAAAATATAACCAGGACAAGATGATCTGCCGCAAATGTTATGCACGCCTGCATCCCCGTGCTGTCAACTGCCGTAAGAAGAAATGTGGTCACAGCAATCAGGTAAAGGATATTATTATTAGTAAGGCGATTGATTTCATTCTTTGCTAA

Coding sequence (CDS)

ATGCAGATCTTCGTCAAAACCCTAACGGGGAAGACTATTACGCTGGAAGTCGAGTCCAGCGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCCGACCAGCAACGGCTTATCTTTGCCGGAAAGCAGCTCGAGGATGGTCGCACTCTCGCCGATTACAACATCCAGAAAGAATCAACGCTACACCTCGTTCTAAGGCTTCGTGGTGGGATTATTGAGCCATCTTTGATGGCATTGGCCAGAAAATATAACCAGGACAAGATGATCTGCCGCAAATGTTATGCACGCCTGCATCCCCGTGCTGTCAACTGCCGTAAGAAGAAATGTGGTCACAGCAATCAGGTAAAGGATATTATTATTAGTAAGGCGATTGATTTCATTCTTTGCTAA

Protein sequence

MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQVKDIIISKAIDFILC

Homology

[Close]

BLAST of HG10008870 vs. NCBI nr
Match: KAA8516754.1 (hypothetical protein F0562_017048 [Nyssa sinensis])

HSP 1 Score: 245.7 bits (626), Expect = 2.2e-61
Identity = 121/126 (96.03%), Postives = 124/126 (98.41%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

Query: 121 VKDIII 127
           V  +++
Sbjct: 121 VSTMLV 126

[Close]

BLAST of HG10008870 vs. NCBI nr
Match: KAG4393946.1 (hypothetical protein GLYMA_03G197600v4 [Glycine max])

HSP 1 Score: 245.4 bits (625), Expect = 2.9e-61
Identity = 123/133 (92.48%), Postives = 128/133 (96.24%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

Query: 121 VKDIIISKAIDFI 134
           V+  ++   +DF+
Sbjct: 121 VRPQLM---LDFV 130

[Close]

BLAST of HG10008870 vs. NCBI nr
Match: CAF1815065.1 (unnamed protein product [Brassica napus])

HSP 1 Score: 245.4 bits (625), Expect = 2.9e-61
Identity = 122/127 (96.06%), Postives = 124/127 (97.64%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

Query: 121 VKDIIIS 128
           V  + +S
Sbjct: 121 VLPLSLS 127

[Close]

BLAST of HG10008870 vs. NCBI nr
Match: KAF3671910.1 (Ubiquitin-60S ribosomal protein L40-1 [Capsicum annuum])

HSP 1 Score: 245.0 bits (624), Expect = 3.8e-61
Identity = 121/124 (97.58%), Postives = 123/124 (99.19%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

Query: 121 VKDI 125
           V ++
Sbjct: 121 VGEL 124

[Close]

BLAST of HG10008870 vs. NCBI nr
Match: PIA34853.1 (hypothetical protein AQUCO_03700255v1 [Aquilegia coerulea])

HSP 1 Score: 245.0 bits (624), Expect = 3.8e-61
Identity = 122/132 (92.42%), Postives = 126/132 (95.45%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

Query: 121 VKDIIISKAIDF 133
           V   +++   +F
Sbjct: 121 VFFFLLAFTCNF 132

[Close]

BLAST of HG10008870 vs. ExPASy Swiss-Prot
Match: P49636 (Ubiquitin-60S ribosomal protein L40 OS=Nicotiana sylvestris OX=4096 GN=UBICEP52-7 PE=2 SV=2)

HSP 1 Score: 242.3 bits (617), Expect = 3.2e-63
Identity = 119/122 (97.54%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCR+KKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRRKKCGHSNQ 120

Query: 121 VK 123
           ++
Sbjct: 121 LR 122

[Close]

BLAST of HG10008870 vs. ExPASy Swiss-Prot
Match: B9DHA6 (Ubiquitin-60S ribosomal protein L40-1 OS=Arabidopsis thaliana OX=3702 GN=RPL40A PE=2 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 5.5e-63
Identity = 119/122 (97.54%), Postives = 121/122 (99.18%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLM LARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMMLARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

Query: 121 VK 123
           ++
Sbjct: 121 LR 122

[Close]

BLAST of HG10008870 vs. ExPASy Swiss-Prot
Match: P0CH34 (Ubiquitin-60S ribosomal protein L40-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Ub-CEP52-1 PE=2 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 5.5e-63
Identity = 119/122 (97.54%), Postives = 121/122 (99.18%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSL ALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

Query: 121 VK 123
           ++
Sbjct: 121 LR 122

[Close]

BLAST of HG10008870 vs. ExPASy Swiss-Prot
Match: Q42202 (Ubiquitin-60S ribosomal protein L40-2 OS=Arabidopsis thaliana OX=3702 GN=RPL40B PE=2 SV=2)

HSP 1 Score: 241.5 bits (615), Expect = 5.5e-63
Identity = 119/122 (97.54%), Postives = 121/122 (99.18%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLM LARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMMLARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

Query: 121 VK 123
           ++
Sbjct: 121 LR 122

[Close]

BLAST of HG10008870 vs. ExPASy Swiss-Prot
Match: P0CH35 (Ubiquitin-60S ribosomal protein L40-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Ub-CEP52-2 PE=3 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 5.5e-63
Identity = 119/122 (97.54%), Postives = 121/122 (99.18%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSL ALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

Query: 121 VK 123
           ++
Sbjct: 121 LR 122

[Close]

BLAST of HG10008870 vs. ExPASy TrEMBL
Match: A0A5J4ZFZ4 (Ubiquitin OS=Nyssa sinensis OX=561372 GN=F0562_017048 PE=3 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 1.1e-61
Identity = 121/126 (96.03%), Postives = 124/126 (98.41%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

Query: 121 VKDIII 127
           V  +++
Sbjct: 121 VSTMLV 126

[Close]

BLAST of HG10008870 vs. ExPASy TrEMBL
Match: A0A2G5CUA0 (Ubiquitin OS=Aquilegia coerulea OX=218851 GN=AQUCO_03700255v1 PE=3 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 1.8e-61
Identity = 122/132 (92.42%), Postives = 126/132 (95.45%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

Query: 121 VKDIIISKAIDF 133
           V   +++   +F
Sbjct: 121 VFFFLLAFTCNF 132

[Close]

BLAST of HG10008870 vs. ExPASy TrEMBL
Match: A0A4D8YPT6 (Ubiquitin OS=Salvia splendens OX=180675 GN=RP-L40e PE=3 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 1.8e-61
Identity = 122/132 (92.42%), Postives = 125/132 (94.70%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

Query: 121 VKDIIISKAIDF 133
           V +      +D+
Sbjct: 121 VFEAEEEDQVDY 132

[Close]

BLAST of HG10008870 vs. ExPASy TrEMBL
Match: I1KAY5 (Ubiquitin OS=Glycine max OX=3847 GN=100792206 PE=3 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 4.1e-61
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

Query: 121 V 122
           V
Sbjct: 121 V 121

[Close]

BLAST of HG10008870 vs. ExPASy TrEMBL
Match: V4SRQ5 (Ubiquitin OS=Citrus clementina OX=85681 GN=CICLE_v10013083mg PE=3 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 4.1e-61
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

Query: 121 V 122
           V
Sbjct: 121 V 121

[Close]

BLAST of HG10008870 vs. TAIR 10
Match: AT2G36170.1 (Ubiquitin supergroup;Ribosomal protein L40e )

HSP 1 Score: 241.5 bits (615), Expect = 3.9e-64
Identity = 119/122 (97.54%), Postives = 121/122 (99.18%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLM LARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMMLARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

Query: 121 VK 123
           ++
Sbjct: 121 LR 122

[Close]

BLAST of HG10008870 vs. TAIR 10
Match: AT3G52590.1 (ubiquitin extension protein 1 )

HSP 1 Score: 241.5 bits (615), Expect = 3.9e-64
Identity = 119/122 (97.54%), Postives = 121/122 (99.18%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120
           IQKESTLHLVLRLRGGIIEPSLM LARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMMLARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

Query: 121 VK 123
           ++
Sbjct: 121 LR 122

[Close]

BLAST of HG10008870 vs. TAIR 10
Match: AT1G65350.1 (ubiquitin 13 )

HSP 1 Score: 150.2 bits (378), Expect = 1.2e-36
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61 IQKESTLHLVLRLRGGI 78
          IQKESTLHLVLRLRGG+
Sbjct: 61 IQKESTLHLVLRLRGGM 77

[Close]

BLAST of HG10008870 vs. TAIR 10
Match: AT4G05320.2 (polyubiquitin 10 )

HSP 1 Score: 150.2 bits (378), Expect = 1.2e-36
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61 IQKESTLHLVLRLRGGI 78
          IQKESTLHLVLRLRGG+
Sbjct: 61 IQKESTLHLVLRLRGGM 77

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BLAST of HG10008870 vs. TAIR 10
Match: AT4G02890.1 (Ubiquitin family protein )

HSP 1 Score: 150.2 bits (378), Expect = 1.2e-36
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
          MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61 IQKESTLHLVLRLRGGI 78
          IQKESTLHLVLRLRGG+
Sbjct: 61 IQKESTLHLVLRLRGGM 77

The following BLAST results are available for this feature:

BLAST of HG10008870 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA8516754.1	2.2e-61	96.03	hypothetical protein F0562_017048 [Nyssa sinensis]	[more]
KAG4393946.1	2.9e-61	92.48	hypothetical protein GLYMA_03G197600v4 [Glycine max]	[more]
CAF1815065.1	2.9e-61	96.06	unnamed protein product [Brassica napus]	[more]
KAF3671910.1	3.8e-61	97.58	Ubiquitin-60S ribosomal protein L40-1 [Capsicum annuum]	[more]
PIA34853.1	3.8e-61	92.42	hypothetical protein AQUCO_03700255v1 [Aquilegia coerulea]	[more]

BLAST of HG10008870 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49636	3.2e-63	97.54	Ubiquitin-60S ribosomal protein L40 OS=Nicotiana sylvestris OX=4096 GN=UBICEP52-...	[more]
B9DHA6	5.5e-63	97.54	Ubiquitin-60S ribosomal protein L40-1 OS=Arabidopsis thaliana OX=3702 GN=RPL40A ...	[more]
P0CH34	5.5e-63	97.54	Ubiquitin-60S ribosomal protein L40-1 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
Q42202	5.5e-63	97.54	Ubiquitin-60S ribosomal protein L40-2 OS=Arabidopsis thaliana OX=3702 GN=RPL40B ...	[more]
P0CH35	5.5e-63	97.54	Ubiquitin-60S ribosomal protein L40-2 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]

BLAST of HG10008870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5J4ZFZ4	1.1e-61	96.03	Ubiquitin OS=Nyssa sinensis OX=561372 GN=F0562_017048 PE=3 SV=1	[more]
A0A2G5CUA0	1.8e-61	92.42	Ubiquitin OS=Aquilegia coerulea OX=218851 GN=AQUCO_03700255v1 PE=3 SV=1	[more]
A0A4D8YPT6	1.8e-61	92.42	Ubiquitin OS=Salvia splendens OX=180675 GN=RP-L40e PE=3 SV=1	[more]
I1KAY5	4.1e-61	100.00	Ubiquitin OS=Glycine max OX=3847 GN=100792206 PE=3 SV=1	[more]
V4SRQ5	4.1e-61	100.00	Ubiquitin OS=Citrus clementina OX=85681 GN=CICLE_v10013083mg PE=3 SV=1	[more]

BLAST of HG10008870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G36170.1	3.9e-64	97.54	Ubiquitin supergroup;Ribosomal protein L40e	[more]
AT3G52590.1	3.9e-64	97.54	ubiquitin extension protein 1	[more]
AT1G65350.1	1.2e-36	98.70	ubiquitin 13	[more]
AT4G05320.2	1.2e-36	98.70	polyubiquitin 10	[more]
AT4G02890.1	1.2e-36	98.70	Ubiquitin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019956	Ubiquitin domain	PRINTS	PR00348	UBIQUITIN	coord: 11..31 score: 85.2 coord: 32..52 score: 95.05 coord: 53..74 score: 91.18
IPR000626	Ubiquitin-like domain	SMART	SM00213	ubq_7	coord: 1..72 e-value: 3.0E-35 score: 133.1
IPR000626	Ubiquitin-like domain	PFAM	PF00240	ubiquitin	coord: 3..74 e-value: 4.1E-34 score: 116.1
IPR000626	Ubiquitin-like domain	PROSITE	PS50053	UBIQUITIN_2	coord: 1..76 score: 30.452106
IPR001975	Ribosomal protein L40e	SMART	SM01377	Ribosomal_L40e_3	coord: 77..128 e-value: 2.2E-27 score: 106.9
IPR001975	Ribosomal protein L40e	PFAM	PF01020	Ribosomal_L40e	coord: 78..122 e-value: 3.6E-28 score: 97.2
IPR038587	Ribosomal protein L40e superfamily	GENE3D	4.10.1060.50		coord: 80..124 e-value: 2.2E-29 score: 103.1
None	No IPR available	GENE3D	3.10.20.90		coord: 1..79 e-value: 7.1E-46 score: 156.1
None	No IPR available	PANTHER	PTHR10666:SF342	UBIQUITIN-60S RIBOSOMAL PROTEIN L40	coord: 1..124
None	No IPR available	PANTHER	PTHR10666	UBIQUITIN	coord: 1..124
None	No IPR available	CDD	cd01803	Ubl_ubiquitin	coord: 1..76 e-value: 1.14531E-55 score: 166.466
IPR019954	Ubiquitin conserved site	PROSITE	PS00299	UBIQUITIN_1	coord: 27..52
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 1..76
IPR011332	Zinc-binding ribosomal protein	SUPERFAMILY	57829	Zn-binding ribosomal proteins	coord: 76..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10008870.1	HG10008870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019941	modification-dependent protein catabolic process
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0031386	protein tag
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0031625	ubiquitin protein ligase binding
molecular_function	GO:0005515	protein binding