HG10008863 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10008863
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	60S acidic ribosomal protein P1
Location	Chr06: 321305 .. 321959 (-)
RNA-Seq Expression	HG10008863
Synteny	HG10008863

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTACCTGCAGTGAACTCGCTTGCACCTACGCCGCCTTGATTCTTCATGACGACGCCATCTCCGTCACTGTACCTATCGTTTTTCCTTCTTCTCTACTTCCTTTTACCTCGCGCTAATTCGATTTCTAACAACTCTCTTCTTCTTTCTTTCCATATTTTAATTTAGGCCGAGAAGATTTCCACATTGGTGAACACTGCCGGCCTTACCGTCGAATCATACTGGCCCTCTCTCTTTGCTAAGTTGGCCTCCAAAAGGAACATCGACGATCTCATTCTCAACCTCGGATCTGCTGCGGCTGCAGCTGCTGCTCCCTCCGCTGAGGCTGCTTCACTCTCTATCTCATCTTCTGCCGGTAATGCCGCTCCTGCGCCCGTCGATAAGAAGGTACGTGGTTTTTTCATACTTCCTAAATAAATAAATAATTAATTCCAATTACGATTACGATTATATAATTTTATATATGATTTAATCGCTCCAAGCAATTGAGCCTAGCTAGCTCCTTTTTACTGGAGCATATATATATATATATATATTCTTGATTTTGATTACGTATATTCCTCGTTATATATGATTGTATTGTAGCTGTATCATTTGCAGGAAGAGGTCATGGAAGAGAGCGAGGATGACATGGTCTTCGGCTTGTTTGATTAG

mRNA sequence

ATGTCTACCTGCAGTGAACTCGCTTGCACCTACGCCGCCTTGATTCTTCATGACGACGCCATCTCCGTCACTGCCGAGAAGATTTCCACATTGGTGAACACTGCCGGCCTTACCGTCGAATCATACTGGCCCTCTCTCTTTGCTAAGTTGGCCTCCAAAAGGAACATCGACGATCTCATTCTCAACCTCGGATCTGCTGCGGCTGCAGCTGCTGCTCCCTCCGCTGAGGCTGCTTCACTCTCTATCTCATCTTCTGCCGGTAATGCCGCTCCTGCGCCCGTCGATAAGAAGGAAGAGGTCATGGAAGAGAGCGAGGATGACATGGTCTTCGGCTTGTTTGATTAG

Coding sequence (CDS)

ATGTCTACCTGCAGTGAACTCGCTTGCACCTACGCCGCCTTGATTCTTCATGACGACGCCATCTCCGTCACTGCCGAGAAGATTTCCACATTGGTGAACACTGCCGGCCTTACCGTCGAATCATACTGGCCCTCTCTCTTTGCTAAGTTGGCCTCCAAAAGGAACATCGACGATCTCATTCTCAACCTCGGATCTGCTGCGGCTGCAGCTGCTGCTCCCTCCGCTGAGGCTGCTTCACTCTCTATCTCATCTTCTGCCGGTAATGCCGCTCCTGCGCCCGTCGATAAGAAGGAAGAGGTCATGGAAGAGAGCGAGGATGACATGGTCTTCGGCTTGTTTGATTAG

Protein sequence

MSTCSELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLILNLGSAAAAAAAPSAEAASLSISSSAGNAAPAPVDKKEEVMEESEDDMVFGLFD

Homology

[Close]

BLAST of HG10008863 vs. NCBI nr
Match: XP_022138164.1 (60S acidic ribosomal protein P1-like isoform X2 [Momordica charantia])

HSP 1 Score: 152.9 bits (385), Expect = 1.7e-33
Identity = 91/115 (79.13%), Postives = 101/115 (87.83%), Query Frame = 0


Query: 1   MSTCSELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLI 60
           MST SELACTYAALILHDDAISVTAEKI+TLV  AGLTVESYWPSLFAKL+SKRNIDDLI
Sbjct: 1   MST-SELACTYAALILHDDAISVTAEKIATLVKAAGLTVESYWPSLFAKLSSKRNIDDLI 60

Query: 61  LNLGSAAAAAAAPSAEAASLSISSSAGNA-APAPVDKKEEVMEESEDDMVFGLFD 115
           LN+GS  AAA+AP + A+S S  +SA  A APAPV+KKEE +EESEDD+VFGLFD
Sbjct: 61  LNVGS--AAASAPLSMASSSSADASAAPAPAPAPVEKKEEAVEESEDDLVFGLFD 112

[Close]

BLAST of HG10008863 vs. NCBI nr
Match: XP_022138163.1 (60S acidic ribosomal protein P1-like isoform X1 [Momordica charantia])

HSP 1 Score: 150.6 bits (379), Expect = 8.2e-33
Identity = 87/110 (79.09%), Postives = 97/110 (88.18%), Query Frame = 0


Query: 6   ELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLILNLGS 65
           ELACTYAALILHDDAISVTAEKI+TLV  AGLTVESYWPSLFAKL+SKRNIDDLILN+GS
Sbjct: 33  ELACTYAALILHDDAISVTAEKIATLVKAAGLTVESYWPSLFAKLSSKRNIDDLILNVGS 92

Query: 66  AAAAAAAPSAEAASLSISSSAGNA-APAPVDKKEEVMEESEDDMVFGLFD 115
             AAA+AP + A+S S  +SA  A APAPV+KKEE +EESEDD+VFGLFD
Sbjct: 93  --AAASAPLSMASSSSADASAAPAPAPAPVEKKEEAVEESEDDLVFGLFD 140

[Close]

BLAST of HG10008863 vs. NCBI nr
Match: CAA7023305.1 (unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 130.6 bits (327), Expect = 8.8e-27
Identity = 76/110 (69.09%), Postives = 82/110 (74.55%), Query Frame = 0


Query: 5   SELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLILNLG 64
           SELACTYAALILHDD I +TAEKISTLV  A + VESYWP LFAKL  K+NIDDLI+N+G
Sbjct: 4   SELACTYAALILHDDGIDITAEKISTLVKAANVDVESYWPGLFAKLCQKKNIDDLIMNVG 63

Query: 65  SAAAAAAAPSAEAASLSISSSAGNAAPAPVDKKEEVMEESEDDMVFGLFD 115
                AAAP A AA  S +S A  AA     KKEEV EESEDDMVFGLFD
Sbjct: 64  VGGGGAAAPVAAAA--SAASQASPAAEETKKKKEEVKEESEDDMVFGLFD 111

[Close]

BLAST of HG10008863 vs. NCBI nr
Match: GFP88745.1 (60S acidic ribosomal protein p1 [Phtheirospermum japonicum])

HSP 1 Score: 128.3 bits (321), Expect = 4.4e-26
Identity = 72/109 (66.06%), Postives = 83/109 (76.15%), Query Frame = 0


Query: 6   ELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLILNLGS 65
           ELACTYAAL+LHDD I+VTAEKI+TLV  A LTVESYWPSLFAKL  K+NI+DL++N+GS
Sbjct: 5   ELACTYAALVLHDDGIAVTAEKIATLVKAANLTVESYWPSLFAKLCEKKNIEDLVMNVGS 64

Query: 66  AAAAAAAPSAEAASLSISSSAGNAAPAPVDKKEEVMEESEDDMVFGLFD 115
              AA A SA A   S   +A  AAPA  +KKEE  EES+DDM F LFD
Sbjct: 65  GGGAAVAVSAPAGGAS-GGAAAAAAPAAEEKKEEAKEESDDDMGFSLFD 112

[Close]

BLAST of HG10008863 vs. NCBI nr
Match: KAF7816627.1 (60S acidic ribosomal protein P1 [Senna tora])

HSP 1 Score: 128.3 bits (321), Expect = 4.4e-26
Identity = 74/110 (67.27%), Postives = 85/110 (77.27%), Query Frame = 0


Query: 5   SELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLILNLG 64
           SELAC+YAA+ILHDD I++TAEKI+TLV  A ++VESYWPSLFAKLA KRNIDDLILN G
Sbjct: 4   SELACSYAAMILHDDGIAITAEKINTLVKMANVSVESYWPSLFAKLAEKRNIDDLILNAG 63

Query: 65  SAAAAAAAPSAEAASLSISSSAGNAAPAPVDKKEEVMEESEDDMVFGLFD 115
           S  A A A +A AA     S+A  AAPA  +KKEE  EES+DDM F LFD
Sbjct: 64  SGGAPAVAVAAPAAGAGAGSAA--AAPAAEEKKEEPKEESDDDMGFSLFD 111

[Close]

BLAST of HG10008863 vs. ExPASy Swiss-Prot
Match: O23095 (60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana OX=3702 GN=RPP1B PE=1 SV=2)

HSP 1 Score: 112.1 bits (279), Expect = 4.2e-24
Identity = 60/114 (52.63%), Postives = 82/114 (71.93%), Query Frame = 0


Query: 1   MSTCSELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLI 60
           MST  ELAC+YA +IL D+ I++T++KI+TLV  AG+ +ESYWP LFAK+A KRN+ DLI
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNLGSAAAAAAAPSAEAASLSISSSAGNAAPAPVDKKEEVMEESEDDMVFGLFD 115
           +N+G+      AP   AA+ + +  A  AAPA  +KK+E  EES+ D+ FGLFD
Sbjct: 61  MNVGAGGGGGGAP-VSAAAPAAAGGAAAAAPAKEEKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of HG10008863 vs. ExPASy Swiss-Prot
Match: P52855 (60S acidic ribosomal protein P1 OS=Zea mays OX=4577 GN=RPP1A PE=1 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 4.2e-24
Identity = 64/109 (58.72%), Postives = 78/109 (71.56%), Query Frame = 0


Query: 6   ELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLILNLGS 65
           ELAC YAALIL DD I++TAEKI+T+V  A + VESYWP+LFAKL  KRN++DLIL++GS
Sbjct: 5   ELACRYAALILSDDGIAITAEKIATIVKAANIKVESYWPALFAKLLEKRNVEDLILSVGS 64

Query: 66  AAAAAAAPSAEAASLSISSSAGNAAPAPVDKKEEVMEESEDDMVFGLFD 115
              AA      AA+     +A  AAPA  +KKEE  EES+DDM F LFD
Sbjct: 65  GGGAAPV----AAAAPAGGAAAAAAPAVEEKKEEAKEESDDDMGFSLFD 109

[Close]

BLAST of HG10008863 vs. ExPASy Swiss-Prot
Match: Q8LEQ0 (60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana OX=3702 GN=RPP1C PE=1 SV=2)

HSP 1 Score: 109.8 bits (273), Expect = 2.1e-23
Identity = 62/114 (54.39%), Postives = 80/114 (70.18%), Query Frame = 0


Query: 1   MSTCSELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLI 60
           MST  ELAC+YA +IL D+ I++TA+KI+TLV  AG+T+ESYWP LFAK+A KRN+ DLI
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNLGSAAAAAAAPSAEAASLSISSSAGNAAPAPVDKKEEVMEESEDDMVFGLFD 115
           +N+G A     AP A AA  +   +A  A  A   KK+E  EES+ D+ FGLFD
Sbjct: 61  MNVG-AGGGGGAPVAAAAPAAGGGAAAAAPAAEEKKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of HG10008863 vs. ExPASy Swiss-Prot
Match: Q8LCW9 (60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana OX=3702 GN=RPP1A PE=3 SV=2)

HSP 1 Score: 106.7 bits (265), Expect = 1.8e-22
Identity = 63/117 (53.85%), Postives = 82/117 (70.09%), Query Frame = 0


Query: 1   MSTCSELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLI 60
           MST  ELAC+YA +IL D+ I++TA+KI+TLV  AG+++ESYWP LFAK+A KRN+ DLI
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNLGSAAAAAAAPSAEAASLSISSSAGNAAPAPV---DKKEEVMEESEDDMVFGLFD 115
           +N+G A     AP A AA     ++ G AA AP     KK+E  EES+ D+ FGLFD
Sbjct: 61  MNVG-AGGGGGAPVAAAA----PAAGGGAAAAPAAEEKKKDEPAEESDGDLGFGLFD 112

[Close]

BLAST of HG10008863 vs. ExPASy Swiss-Prot
Match: P47955 (60S acidic ribosomal protein P1 OS=Mus musculus OX=10090 GN=Rplp1 PE=1 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 4.4e-21
Identity = 58/114 (50.88%), Postives = 78/114 (68.42%), Query Frame = 0


Query: 1   MSTCSELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLI 60
           M++ SELAC Y+ALILHDD ++VT +KI+ L+  AG++VE +WP LFAK  +  NI  LI
Sbjct: 1   MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVSVEPFWPGLFAKALANVNIGSLI 60

Query: 61  LNLGSAAAAAAAPSAEAASLSISSSAGNAAPAPVDKKEEVMEESEDDMVFGLFD 115
            N+G+   A AA +A A   + S++A  A    V+ K+E  EESEDDM FGLFD
Sbjct: 61  CNVGAGGPAPAAGAAPAGGAAPSTAAAPAEEKKVEAKKEESEESEDDMGFGLFD 114

[Close]

BLAST of HG10008863 vs. ExPASy TrEMBL
Match: A0A6J1C9A3 (60S acidic ribosomal protein P1-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111009401 PE=3 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 8.0e-34
Identity = 91/115 (79.13%), Postives = 101/115 (87.83%), Query Frame = 0


Query: 1   MSTCSELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLI 60
           MST SELACTYAALILHDDAISVTAEKI+TLV  AGLTVESYWPSLFAKL+SKRNIDDLI
Sbjct: 1   MST-SELACTYAALILHDDAISVTAEKIATLVKAAGLTVESYWPSLFAKLSSKRNIDDLI 60

Query: 61  LNLGSAAAAAAAPSAEAASLSISSSAGNA-APAPVDKKEEVMEESEDDMVFGLFD 115
           LN+GS  AAA+AP + A+S S  +SA  A APAPV+KKEE +EESEDD+VFGLFD
Sbjct: 61  LNVGS--AAASAPLSMASSSSADASAAPAPAPAPVEKKEEAVEESEDDLVFGLFD 112

[Close]

BLAST of HG10008863 vs. ExPASy TrEMBL
Match: A0A6J1CC92 (60S acidic ribosomal protein P1-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111009401 PE=3 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 4.0e-33
Identity = 87/110 (79.09%), Postives = 97/110 (88.18%), Query Frame = 0


Query: 6   ELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLILNLGS 65
           ELACTYAALILHDDAISVTAEKI+TLV  AGLTVESYWPSLFAKL+SKRNIDDLILN+GS
Sbjct: 33  ELACTYAALILHDDAISVTAEKIATLVKAAGLTVESYWPSLFAKLSSKRNIDDLILNVGS 92

Query: 66  AAAAAAAPSAEAASLSISSSAGNA-APAPVDKKEEVMEESEDDMVFGLFD 115
             AAA+AP + A+S S  +SA  A APAPV+KKEE +EESEDD+VFGLFD
Sbjct: 93  --AAASAPLSMASSSSADASAAPAPAPAPVEKKEEAVEESEDDLVFGLFD 140

[Close]

BLAST of HG10008863 vs. ExPASy TrEMBL
Match: A0A6D2I4R4 (Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS10540 PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 4.3e-27
Identity = 76/110 (69.09%), Postives = 82/110 (74.55%), Query Frame = 0


Query: 5   SELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLILNLG 64
           SELACTYAALILHDD I +TAEKISTLV  A + VESYWP LFAKL  K+NIDDLI+N+G
Sbjct: 4   SELACTYAALILHDDGIDITAEKISTLVKAANVDVESYWPGLFAKLCQKKNIDDLIMNVG 63

Query: 65  SAAAAAAAPSAEAASLSISSSAGNAAPAPVDKKEEVMEESEDDMVFGLFD 115
                AAAP A AA  S +S A  AA     KKEEV EESEDDMVFGLFD
Sbjct: 64  VGGGGAAAPVAAAA--SAASQASPAAEETKKKKEEVKEESEDDMVFGLFD 111

[Close]

BLAST of HG10008863 vs. ExPASy TrEMBL
Match: A0A6P6VNI6 (LOW QUALITY PROTEIN: 60S acidic ribosomal protein P1-like OS=Coffea arabica OX=13443 GN=LOC113724827 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 3.6e-26
Identity = 73/109 (66.97%), Postives = 81/109 (74.31%), Query Frame = 0


Query: 6   ELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLILNLGS 65
           EL CTYA+LILHDD I VTAEKI+TLV  A LTVESYWPSLFAKL  KRNIDDLI+N+G 
Sbjct: 5   ELGCTYASLILHDDGIPVTAEKIATLVKAANLTVESYWPSLFAKLCEKRNIDDLIVNVG- 64

Query: 66  AAAAAAAPSAEAASLSISSSAGNAAPAPVDKKEEVMEESEDDMVFGLFD 115
                AAP+A AAS     +A  AAPA  +KKEE  EES+DDM F LFD
Sbjct: 65  CGGGGAAPAAVAASAGAGGAAAAAAPAAEEKKEEPKEESDDDMGFSLFD 112

[Close]

BLAST of HG10008863 vs. ExPASy TrEMBL
Match: A0A5A7QQN7 (60S acidic ribosomal protein P1 OS=Striga asiatica OX=4170 GN=STAS_23806 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.4e-25
Identity = 72/109 (66.06%), Postives = 83/109 (76.15%), Query Frame = 0


Query: 6   ELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLILNLGS 65
           ELACTYA+LILHDD I+VTAEKI+TLV  A LTVESYWPSLFAKL  K+NI+DLI+N+GS
Sbjct: 53  ELACTYASLILHDDGIAVTAEKIATLVKAANLTVESYWPSLFAKLCEKKNIEDLIVNVGS 112

Query: 66  AAAAAAAPSAEAASLSISSSAGNAAPAPVDKKEEVMEESEDDMVFGLFD 115
              AA A +A A     S +A  AAPA  +KKEE  EES+DDM F LFD
Sbjct: 113 GGGAAVAVAAPAG--GASGAAAAAAPAAEEKKEEPKEESDDDMGFSLFD 159

[Close]

BLAST of HG10008863 vs. TAIR 10
Match: AT5G24510.1 (60S acidic ribosomal protein family )

HSP 1 Score: 115.2 bits (287), Expect = 3.6e-26
Identity = 69/117 (58.97%), Postives = 80/117 (68.38%), Query Frame = 0


Query: 1   MSTCSELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLI 60
           MST SELACTYAALILHDD I +TAE IS LV TA + VESYWPSLFAKL  K+NIDDLI
Sbjct: 1   MST-SELACTYAALILHDDGIEITAENISKLVKTANVNVESYWPSLFAKLCEKKNIDDLI 60

Query: 61  LNLGSAAAAAAAPSAEAASLSISSSAGNAAPAPVDKKEE---VMEESEDDMVFGLFD 115
           +N+G+     A P   AA      +A  +   P +KK E   + EESEDDM+ GLFD
Sbjct: 61  MNVGAGGCGVARPVTTAA-----PTASQSVSIPEEKKNEMEVIKEESEDDMIIGLFD 111

[Close]

BLAST of HG10008863 vs. TAIR 10
Match: AT4G00810.1 (60S acidic ribosomal protein family )

HSP 1 Score: 112.1 bits (279), Expect = 3.0e-25
Identity = 60/114 (52.63%), Postives = 82/114 (71.93%), Query Frame = 0


Query: 1   MSTCSELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLI 60
           MST  ELAC+YA +IL D+ I++T++KI+TLV  AG+ +ESYWP LFAK+A KRN+ DLI
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNLGSAAAAAAAPSAEAASLSISSSAGNAAPAPVDKKEEVMEESEDDMVFGLFD 115
           +N+G+      AP   AA+ + +  A  AAPA  +KK+E  EES+ D+ FGLFD
Sbjct: 61  MNVGAGGGGGGAP-VSAAAPAAAGGAAAAAPAKEEKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of HG10008863 vs. TAIR 10
Match: AT4G00810.2 (60S acidic ribosomal protein family )

HSP 1 Score: 112.1 bits (279), Expect = 3.0e-25
Identity = 60/114 (52.63%), Postives = 82/114 (71.93%), Query Frame = 0


Query: 1   MSTCSELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLI 60
           MST  ELAC+YA +IL D+ I++T++KI+TLV  AG+ +ESYWP LFAK+A KRN+ DLI
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNLGSAAAAAAAPSAEAASLSISSSAGNAAPAPVDKKEEVMEESEDDMVFGLFD 115
           +N+G+      AP   AA+ + +  A  AAPA  +KK+E  EES+ D+ FGLFD
Sbjct: 61  MNVGAGGGGGGAP-VSAAAPAAAGGAAAAAPAKEEKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of HG10008863 vs. TAIR 10
Match: AT5G47700.1 (60S acidic ribosomal protein family )

HSP 1 Score: 109.8 bits (273), Expect = 1.5e-24
Identity = 62/114 (54.39%), Postives = 80/114 (70.18%), Query Frame = 0


Query: 1   MSTCSELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLI 60
           MST  ELAC+YA +IL D+ I++TA+KI+TLV  AG+T+ESYWP LFAK+A KRN+ DLI
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNLGSAAAAAAAPSAEAASLSISSSAGNAAPAPVDKKEEVMEESEDDMVFGLFD 115
           +N+G A     AP A AA  +   +A  A  A   KK+E  EES+ D+ FGLFD
Sbjct: 61  MNVG-AGGGGGAPVAAAAPAAGGGAAAAAPAAEEKKKDEPAEESDGDLGFGLFD 113

[Close]

BLAST of HG10008863 vs. TAIR 10
Match: AT5G47700.2 (60S acidic ribosomal protein family )

HSP 1 Score: 109.8 bits (273), Expect = 1.5e-24
Identity = 62/114 (54.39%), Postives = 80/114 (70.18%), Query Frame = 0


Query: 1   MSTCSELACTYAALILHDDAISVTAEKISTLVNTAGLTVESYWPSLFAKLASKRNIDDLI 60
           MST  ELAC+YA +IL D+ I++TA+KI+TLV  AG+T+ESYWP LFAK+A KRN+ DLI
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 60

Query: 61  LNLGSAAAAAAAPSAEAASLSISSSAGNAAPAPVDKKEEVMEESEDDMVFGLFD 115
           +N+G A     AP A AA  +   +A  A  A   KK+E  EES+ D+ FGLFD
Sbjct: 61  MNVG-AGGGGGAPVAAAAPAAGGGAAAAAPAAEEKKKDEPAEESDGDLGFGLFD 113

The following BLAST results are available for this feature:

BLAST of HG10008863 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022138164.1	1.7e-33	79.13	60S acidic ribosomal protein P1-like isoform X2 [Momordica charantia]	[more]
XP_022138163.1	8.2e-33	79.09	60S acidic ribosomal protein P1-like isoform X1 [Momordica charantia]	[more]
CAA7023305.1	8.8e-27	69.09	unnamed protein product [Microthlaspi erraticum]	[more]
GFP88745.1	4.4e-26	66.06	60S acidic ribosomal protein p1 [Phtheirospermum japonicum]	[more]
KAF7816627.1	4.4e-26	67.27	60S acidic ribosomal protein P1 [Senna tora]	[more]

BLAST of HG10008863 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23095	4.2e-24	52.63	60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana OX=3702 GN=RPP1B PE=1 ...	[more]
P52855	4.2e-24	58.72	60S acidic ribosomal protein P1 OS=Zea mays OX=4577 GN=RPP1A PE=1 SV=1	[more]
Q8LEQ0	2.1e-23	54.39	60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana OX=3702 GN=RPP1C PE=1 ...	[more]
Q8LCW9	1.8e-22	53.85	60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana OX=3702 GN=RPP1A PE=3 ...	[more]
P47955	4.4e-21	50.88	60S acidic ribosomal protein P1 OS=Mus musculus OX=10090 GN=Rplp1 PE=1 SV=1	[more]

BLAST of HG10008863 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C9A3	8.0e-34	79.13	60S acidic ribosomal protein P1-like isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1CC92	4.0e-33	79.09	60S acidic ribosomal protein P1-like isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6D2I4R4	4.3e-27	69.09	Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS10540 ...	[more]
A0A6P6VNI6	3.6e-26	66.97	LOW QUALITY PROTEIN: 60S acidic ribosomal protein P1-like OS=Coffea arabica OX=1...	[more]
A0A5A7QQN7	1.4e-25	66.06	60S acidic ribosomal protein P1 OS=Striga asiatica OX=4170 GN=STAS_23806 PE=3 SV...	[more]

BLAST of HG10008863 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G24510.1	3.6e-26	58.97	60S acidic ribosomal protein family	[more]
AT4G00810.1	3.0e-25	52.63	60S acidic ribosomal protein family	[more]
AT4G00810.2	3.0e-25	52.63	60S acidic ribosomal protein family	[more]
AT5G47700.1	1.5e-24	54.39	60S acidic ribosomal protein family	[more]
AT5G47700.2	1.5e-24	54.39	60S acidic ribosomal protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF00428	Ribosomal_60s	coord: 23..113 e-value: 3.6E-18 score: 66.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..114
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..114
None	No IPR available	PANTHER	PTHR45696	60S ACIDIC RIBOSOMAL PROTEIN P1	coord: 4..114
None	No IPR available	CDD	cd05831	Ribosomal_P1	coord: 6..113 e-value: 9.27862E-33 score: 108.563
IPR038716	Ribosomal protein P1/P2, N-terminal domain	GENE3D	1.10.10.1410		coord: 1..64 e-value: 3.0E-30 score: 105.9
IPR027534	Ribosomal protein L12/P1/P2 family	HAMAP	MF_01478	Ribosomal_L12_arch	coord: 7..114 score: 12.660757

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10008863.1	HG10008863.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0006414	translational elongation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0030295	protein kinase activator activity
molecular_function	GO:0043021	ribonucleoprotein complex binding
molecular_function	GO:0003735	structural constituent of ribosome