HG10008822 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10008822
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	50S ribosomal protein L33, chloroplastic
Location	Chr06: 77168 .. 77407 (-)
RNA-Seq Expression	HG10008822
Synteny	HG10008822

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAGTTGCGTGAATCAAAAATCCAAGGGAGGTTCATGGCCAAGGGTAAAGATGCCCGAGTAACAGTTATTTTGGAATGTACTCGTTGTGTTCGAAACGGTGTTAATAAGGAATCAATCGGGATTTCCAGATATATTACTCAAAAGAATCGACACAATACGCCTAGTCGATTGGAATTGAGAAAATTCTGTCCCCGTTGTTACAAACATACGATTCATGGGGAGATAAAGAAATAG

mRNA sequence

ATGGAAGAGTTGCGTGAATCAAAAATCCAAGGGAGGTTCATGGCCAAGGGTAAAGATGCCCGAGTAACAGTTATTTTGGAATGTACTCGTTGTGTTCGAAACGGTGTTAATAAGGAATCAATCGGGATTTCCAGATATATTACTCAAAAGAATCGACACAATACGCCTAGTCGATTGGAATTGAGAAAATTCTGTCCCCGTTGTTACAAACATACGATTCATGGGGAGATAAAGAAATAG

Coding sequence (CDS)

ATGGAAGAGTTGCGTGAATCAAAAATCCAAGGGAGGTTCATGGCCAAGGGTAAAGATGCCCGAGTAACAGTTATTTTGGAATGTACTCGTTGTGTTCGAAACGGTGTTAATAAGGAATCAATCGGGATTTCCAGATATATTACTCAAAAGAATCGACACAATACGCCTAGTCGATTGGAATTGAGAAAATTCTGTCCCCGTTGTTACAAACATACGATTCATGGGGAGATAAAGAAATAG

Protein sequence

MEELRESKIQGRFMAKGKDARVTVILECTRCVRNGVNKESIGISRYITQKNRHNTPSRLELRKFCPRCYKHTIHGEIKK

Homology

[Close]

BLAST of HG10008822 vs. NCBI nr
Match: QJF46404.1 (ribosomal protein L33 [Cucumis melo])

HSP 1 Score: 165.6 bits (418), Expect = 1.7e-37
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MEELRESKIQGRFMAKGKDARVTVILECTRCVRNGVNKESIGISRYITQKNRHNTPSRLE 60
          MEELRESKIQGRFMAKGKDARVTVILECTRCVRNGVNKESIGISRYITQKNRHNTPSRLE
Sbjct: 1  MEELRESKIQGRFMAKGKDARVTVILECTRCVRNGVNKESIGISRYITQKNRHNTPSRLE 60

Query: 61 LRKFCPRCYKHTIHGEIKK 80
          LRKFCPRCYKHTIHGEIKK
Sbjct: 61 LRKFCPRCYKHTIHGEIKK 79

[Close]

BLAST of HG10008822 vs. NCBI nr
Match: YP_004841804.1 (ribosomal protein L33 [Cucumis melo subsp. melo] >YP_009236301.1 ribosomal protein L33 [Gynostemma pentaphyllum] >YP_009346505.1 ribosomal protein L33 [Cucumis x hytivus] >YP_009420815.1 ribosomal protein L33 [Citrullus colocynthis] >YP_009431578.1 ribosomal protein L33 [Citrullus amarus] >YP_009431663.1 ribosomal protein L33 [Citrullus rehmii] >YP_009440178.1 ribosomal protein L33 [Gynostemma longipes] >YP_009440265.1 ribosomal protein L33 [Gynostemma burmanicum (nom. inval.)] >YP_009440352.1 ribosomal protein L33 [Gynostemma pubescens] >YP_009526323.1 ribosomal protein L33 [Hemsleya lijiangensis] >YP_009751759.1 ribosomal protein L33 [Herpetospermum pedunculosum] >YP_009752348.1 ribosomal protein L33 [Bryonia marmorata] >YP_009860094.1 ribosomal protein L33 [Cucumis melo subsp. agrestis] >YP_010119755.1 ribosomal protein L33 [Hemsleya zhejiangensis] >YP_010131115.1 ribosomal protein L33 [Benincasa hispida] >AHM88780.1 ribosomal protein L33 [Lagenaria siceraria] >APW82482.1 ribosomal protein L33 [Citrullus lanatus subsp. vulgaris] >ASY96612.1 ribosomal protein L33 [Cucumis melo var. conomon] >ASY96699.1 ribosomal protein L33 [Cucumis melo var. makuwa] >ASY96786.1 ribosomal protein L33 [Cucumis melo var. momordica] >ASY96873.1 ribosomal protein L33 [Cucumis melo var. dudaim] >ASY96960.1 ribosomal protein L33 [Cucumis melo var. cantalupo] >ASY97134.1 ribosomal protein L33 [Cucumis melo var. inodorus] >ASY97308.1 ribosomal protein L33 [Cucumis melo var. flexuosus] >AXU40454.1 ribosomal protein L33 [Gomphogyne cissiformis var. villosa] >AXU40628.1 ribosomal protein L33 [Gomphogyne cissiformis var. cissiformis] >QCY72863.1 ribosomal protein L33 [Cucumis hystrix] >QRW36576.1 ribosomal protein L33 [Cucumis melo] >QZL38614.1 ribosomal protein L33 [Citrullus naudinianus] >QZL38702.1 ribosomal protein L33 [Citrullus ecirrhosus])

HSP 1 Score: 141.0 bits (354), Expect = 4.5e-30
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 14 MAKGKDARVTVILECTRCVRNGVNKESIGISRYITQKNRHNTPSRLELRKFCPRCYKHTI 73
          MAKGKDARVTVILECTRCVRNGVNKESIGISRYITQKNRHNTPSRLELRKFCPRCYKHTI
Sbjct: 1  MAKGKDARVTVILECTRCVRNGVNKESIGISRYITQKNRHNTPSRLELRKFCPRCYKHTI 60

Query: 74 HGEIKK 80
          HGEIKK
Sbjct: 61 HGEIKK 66

[Close]

BLAST of HG10008822 vs. NCBI nr
Match: YP_009387665.1 (ribosomal protein L33 [Hansenia forbesii] >YP_009387835.1 ribosomal protein L33 [Hansenia forrestii] >QPG23972.1 ribosomal protein L33 [Hansenia oviformis] >ART32609.1 ribosomal protein L33 [Hansenia forbesii] >ART32779.1 ribosomal protein L33 [Hansenia forrestii] >QHV38023.1 ribosomal protein L33 [Hansenia forbesii] >QHV38108.1 ribosomal protein L33 [Hansenia forbesii])

HSP 1 Score: 141.0 bits (354), Expect = 4.5e-30
Identity = 67/79 (84.81%), Postives = 71/79 (89.87%), Query Frame = 0


Query: 1  MEELRESKIQGRFMAKGKDARVTVILECTRCVRNGVNKESIGISRYITQKNRHNTPSRLE 60
          MEEL +SKIQG FMAKGKD R+TVILECT CVRNGVNK S GISRYIT+KNRHNTP+RLE
Sbjct: 1  MEELSKSKIQGGFMAKGKDVRITVILECTCCVRNGVNKVSTGISRYITEKNRHNTPNRLE 60

Query: 61 LRKFCPRCYKHTIHGEIKK 80
          LRKFCP CYKHTIH EIKK
Sbjct: 61 LRKFCPFCYKHTIHEEIKK 79

[Close]

BLAST of HG10008822 vs. NCBI nr
Match: YP_009387580.1 (ribosomal protein L33 [Hansenia weberbaueriana] >YP_010116928.1 ribosomal protein L33 [Haplosphaera himalayensis] >QHS71225.1 ribosomal protein L33 [Haplosphaera phaea] >QHV38448.1 ribosomal protein L33 [Hansenia forrestii] >ART32524.1 ribosomal protein L33 [Hansenia weberbaueriana] >QHV37598.1 ribosomal protein L33 [Hansenia weberbaueriana] >QHV37683.1 ribosomal protein L33 [Hansenia weberbaueriana])

HSP 1 Score: 141.0 bits (354), Expect = 4.5e-30
Identity = 67/79 (84.81%), Postives = 71/79 (89.87%), Query Frame = 0


Query: 1  MEELRESKIQGRFMAKGKDARVTVILECTRCVRNGVNKESIGISRYITQKNRHNTPSRLE 60
          MEEL +SKIQ  FMAKGKD R+TVILECT CVRNGVNK S GISRYIT+KNRHNTP+RLE
Sbjct: 1  MEELSKSKIQRGFMAKGKDVRITVILECTCCVRNGVNKVSTGISRYITEKNRHNTPNRLE 60

Query: 61 LRKFCPRCYKHTIHGEIKK 80
          LRKFCP CYKHTIHGEIKK
Sbjct: 61 LRKFCPFCYKHTIHGEIKK 79

[Close]

BLAST of HG10008822 vs. NCBI nr
Match: YP_009447471.1 (ribosomal protein L33 [Cucurbita maxima] >YP_009447556.1 ribosomal protein L33 [Cucurbita moschata] >YP_009505101.1 ribosomal protein L33 [Cucurbita pepo] >ALO21743.1 ribosomal protein L33 [Cucurbita argyrosperma] >ALO21799.1 ribosomal protein L33 [Cucurbita argyrosperma var. palmeri] >ALO21853.1 ribosomal protein L33 [Cucurbita argyrosperma subsp. sororia] >ALO21906.1 ribosomal protein L33 [Cucurbita cordata] >ALO21983.1 ribosomal protein L33 [Cucurbita digitata] >ALO22057.1 ribosomal protein L33 [Cucurbita ecuadorensis] >ALO22097.1 ribosomal protein L33 [Cucurbita ficifolia] >ALO22245.1 ribosomal protein L33 [Cucurbita lundelliana] >ALO22282.1 ribosomal protein L33 [Cucurbita maxima subsp. andreana] >ALO22424.1 ribosomal protein L33 [Cucurbita okeechobeensis] >ALO22485.1 ribosomal protein L33 [Cucurbita okeechobeensis subsp. martinezii] >ALO22546.1 ribosomal protein L33 [Cucurbita pepo subsp. fraterna] >ALO22618.1 ribosomal protein L33 [Cucurbita pepo subsp. ovifera] >ALO22719.1 ribosomal protein L33 [Cucurbita pepo var. ozarkana] >ALO22766.1 ribosomal protein L33 [Cucurbita pepo subsp. pepo] >ALO22827.1 ribosomal protein L33 [Cucurbita pepo var. texana])

HSP 1 Score: 140.6 bits (353), Expect = 5.9e-30
Identity = 65/66 (98.48%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 14 MAKGKDARVTVILECTRCVRNGVNKESIGISRYITQKNRHNTPSRLELRKFCPRCYKHTI 73
          MAKGKDARVTVILECTRCVRNGVNKES+GISRYITQKNRHNTPSRLELRKFCPRCYKHTI
Sbjct: 1  MAKGKDARVTVILECTRCVRNGVNKESVGISRYITQKNRHNTPSRLELRKFCPRCYKHTI 60

Query: 74 HGEIKK 80
          HGEIKK
Sbjct: 61 HGEIKK 66

[Close]

BLAST of HG10008822 vs. ExPASy Swiss-Prot
Match: Q2QD68 (50S ribosomal protein L33, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl33 PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.3e-32
Identity = 65/66 (98.48%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 14 MAKGKDARVTVILECTRCVRNGVNKESIGISRYITQKNRHNTPSRLELRKFCPRCYKHTI 73
          MAKGKDARVTVILECTRCVRNGVNK+SIGISRYITQKNRHNTPSRLELRKFCPRCYKHTI
Sbjct: 1  MAKGKDARVTVILECTRCVRNGVNKQSIGISRYITQKNRHNTPSRLELRKFCPRCYKHTI 60

Query: 74 HGEIKK 80
          HGEIKK
Sbjct: 61 HGEIKK 66

[Close]

BLAST of HG10008822 vs. ExPASy Swiss-Prot
Match: B1A956 (50S ribosomal protein L33, chloroplastic OS=Carica papaya OX=3649 GN=rpl33 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 9.4e-31
Identity = 62/66 (93.94%), Postives = 63/66 (95.45%), Query Frame = 0


Query: 14 MAKGKDARVTVILECTRCVRNGVNKESIGISRYITQKNRHNTPSRLELRKFCPRCYKHTI 73
          MAKGKDARVT+ILECT CVRNGVNKES GISRYITQKNRHNTPSRLELRKFCP CYKHTI
Sbjct: 1  MAKGKDARVTIILECTSCVRNGVNKESTGISRYITQKNRHNTPSRLELRKFCPYCYKHTI 60

Query: 74 HGEIKK 80
          HGEIKK
Sbjct: 61 HGEIKK 66

[Close]

BLAST of HG10008822 vs. ExPASy Swiss-Prot
Match: A6MM57 (50S ribosomal protein L33, chloroplastic OS=Buxus microphylla OX=153571 GN=rpl33 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 4.7e-30
Identity = 61/66 (92.42%), Postives = 62/66 (93.94%), Query Frame = 0


Query: 14 MAKGKDARVTVILECTRCVRNGVNKESIGISRYITQKNRHNTPSRLELRKFCPRCYKHTI 73
          MAKGKD RV VILECT CVRNGVNKES+GISRYITQKNRHNTPSRLELRKFCP CYKHTI
Sbjct: 1  MAKGKDVRVRVILECTSCVRNGVNKESLGISRYITQKNRHNTPSRLELRKFCPYCYKHTI 60

Query: 74 HGEIKK 80
          HGEIKK
Sbjct: 61 HGEIKK 66

[Close]

BLAST of HG10008822 vs. ExPASy Swiss-Prot
Match: A0ZZ56 (50S ribosomal protein L33, chloroplastic OS=Gossypium barbadense OX=3634 GN=rpl33 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 3.0e-29
Identity = 59/66 (89.39%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 14 MAKGKDARVTVILECTRCVRNGVNKESIGISRYITQKNRHNTPSRLELRKFCPRCYKHTI 73
          MAK KD RVT+ILECT CVRNGVNKES GISRYITQKNRHNTPSRLEL+KFCP CYKHTI
Sbjct: 1  MAKSKDVRVTIILECTSCVRNGVNKESTGISRYITQKNRHNTPSRLELKKFCPYCYKHTI 60

Query: 74 HGEIKK 80
          HGEIKK
Sbjct: 61 HGEIKK 66

[Close]

BLAST of HG10008822 vs. ExPASy Swiss-Prot
Match: Q2L929 (50S ribosomal protein L33, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rpl33 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 3.0e-29
Identity = 59/66 (89.39%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 14 MAKGKDARVTVILECTRCVRNGVNKESIGISRYITQKNRHNTPSRLELRKFCPRCYKHTI 73
          MAK KD RVT+ILECT CVRNGVNKES GISRYITQKNRHNTPSRLEL+KFCP CYKHTI
Sbjct: 1  MAKSKDVRVTIILECTSCVRNGVNKESTGISRYITQKNRHNTPSRLELKKFCPYCYKHTI 60

Query: 74 HGEIKK 80
          HGEIKK
Sbjct: 61 HGEIKK 66

[Close]

BLAST of HG10008822 vs. ExPASy TrEMBL
Match: A0A6M3W1I6 (50S ribosomal protein L33, chloroplastic OS=Cucumis melo OX=3656 GN=rpl33 PE=3 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 8.3e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MEELRESKIQGRFMAKGKDARVTVILECTRCVRNGVNKESIGISRYITQKNRHNTPSRLE 60
          MEELRESKIQGRFMAKGKDARVTVILECTRCVRNGVNKESIGISRYITQKNRHNTPSRLE
Sbjct: 1  MEELRESKIQGRFMAKGKDARVTVILECTRCVRNGVNKESIGISRYITQKNRHNTPSRLE 60

Query: 61 LRKFCPRCYKHTIHGEIKK 80
          LRKFCPRCYKHTIHGEIKK
Sbjct: 61 LRKFCPRCYKHTIHGEIKK 79

[Close]

BLAST of HG10008822 vs. ExPASy TrEMBL
Match: G3ETR8 (50S ribosomal protein L33, chloroplastic OS=Cucumis melo subsp. melo OX=412675 GN=rpl33 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.2e-30
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 14 MAKGKDARVTVILECTRCVRNGVNKESIGISRYITQKNRHNTPSRLELRKFCPRCYKHTI 73
          MAKGKDARVTVILECTRCVRNGVNKESIGISRYITQKNRHNTPSRLELRKFCPRCYKHTI
Sbjct: 1  MAKGKDARVTVILECTRCVRNGVNKESIGISRYITQKNRHNTPSRLELRKFCPRCYKHTI 60

Query: 74 HGEIKK 80
          HGEIKK
Sbjct: 61 HGEIKK 66

[Close]

BLAST of HG10008822 vs. ExPASy TrEMBL
Match: A0A249RZI5 (50S ribosomal protein L33, chloroplastic OS=Cucumis melo var. cantalupensis OX=3658 GN=rpl33 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.2e-30
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 14 MAKGKDARVTVILECTRCVRNGVNKESIGISRYITQKNRHNTPSRLELRKFCPRCYKHTI 73
          MAKGKDARVTVILECTRCVRNGVNKESIGISRYITQKNRHNTPSRLELRKFCPRCYKHTI
Sbjct: 1  MAKGKDARVTVILECTRCVRNGVNKESIGISRYITQKNRHNTPSRLELRKFCPRCYKHTI 60

Query: 74 HGEIKK 80
          HGEIKK
Sbjct: 61 HGEIKK 66

[Close]

BLAST of HG10008822 vs. ExPASy TrEMBL
Match: A0A109WXY7 (50S ribosomal protein L33, chloroplastic OS=Gynostemma pentaphyllum OX=182084 GN=rpl33 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.2e-30
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 14 MAKGKDARVTVILECTRCVRNGVNKESIGISRYITQKNRHNTPSRLELRKFCPRCYKHTI 73
          MAKGKDARVTVILECTRCVRNGVNKESIGISRYITQKNRHNTPSRLELRKFCPRCYKHTI
Sbjct: 1  MAKGKDARVTVILECTRCVRNGVNKESIGISRYITQKNRHNTPSRLELRKFCPRCYKHTI 60

Query: 74 HGEIKK 80
          HGEIKK
Sbjct: 61 HGEIKK 66

[Close]

BLAST of HG10008822 vs. ExPASy TrEMBL
Match: A0A1Y0B5C5 (50S ribosomal protein L33, chloroplastic OS=Hansenia forbesii OX=165499 GN=rpl33 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.2e-30
Identity = 67/79 (84.81%), Postives = 71/79 (89.87%), Query Frame = 0


Query: 1  MEELRESKIQGRFMAKGKDARVTVILECTRCVRNGVNKESIGISRYITQKNRHNTPSRLE 60
          MEEL +SKIQG FMAKGKD R+TVILECT CVRNGVNK S GISRYIT+KNRHNTP+RLE
Sbjct: 1  MEELSKSKIQGGFMAKGKDVRITVILECTCCVRNGVNKVSTGISRYITEKNRHNTPNRLE 60

Query: 61 LRKFCPRCYKHTIHGEIKK 80
          LRKFCP CYKHTIH EIKK
Sbjct: 61 LRKFCPFCYKHTIHEEIKK 79

[Close]

BLAST of HG10008822 vs. TAIR 10
Match: ATCG00640.1 (ribosomal protein L33 )

HSP 1 Score: 125.6 bits (314), Expect = 1.8e-29
Identity = 57/66 (86.36%), Postives = 60/66 (90.91%), Query Frame = 0


Query: 14 MAKGKDARVTVILECTRCVRNGVNKESIGISRYITQKNRHNTPSRLELRKFCPRCYKHTI 73
          MAKGKD RVT+ILECT CVRN + KE+ GISRYITQKNRHNTPSRLELRKFCP CYKHTI
Sbjct: 1  MAKGKDVRVTIILECTSCVRNDIKKEAAGISRYITQKNRHNTPSRLELRKFCPYCYKHTI 60

Query: 74 HGEIKK 80
          HGEIKK
Sbjct: 61 HGEIKK 66

The following BLAST results are available for this feature:

BLAST of HG10008822 vs. NCBI nr


Match Name	E-value	Identity	Description
QJF46404.1	1.7e-37	100.00	ribosomal protein L33 [Cucumis melo]	[more]
YP_004841804.1	4.5e-30	100.00	ribosomal protein L33 [Cucumis melo subsp. melo] >YP_009236301.1 ribosomal prote...	[more]
YP_009387665.1	4.5e-30	84.81	ribosomal protein L33 [Hansenia forbesii] >YP_009387835.1 ribosomal protein L33 ...	[more]
YP_009387580.1	4.5e-30	84.81	ribosomal protein L33 [Hansenia weberbaueriana] >YP_010116928.1 ribosomal protei...	[more]
YP_009447471.1	5.9e-30	98.48	ribosomal protein L33 [Cucurbita maxima] >YP_009447556.1 ribosomal protein L33 [...	[more]

BLAST of HG10008822 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2QD68	1.3e-32	98.48	50S ribosomal protein L33, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl33 PE=...	[more]
B1A956	9.4e-31	93.94	50S ribosomal protein L33, chloroplastic OS=Carica papaya OX=3649 GN=rpl33 PE=3 ...	[more]
A6MM57	4.7e-30	92.42	50S ribosomal protein L33, chloroplastic OS=Buxus microphylla OX=153571 GN=rpl33...	[more]
A0ZZ56	3.0e-29	89.39	50S ribosomal protein L33, chloroplastic OS=Gossypium barbadense OX=3634 GN=rpl3...	[more]
Q2L929	3.0e-29	89.39	50S ribosomal protein L33, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rpl33 ...	[more]

BLAST of HG10008822 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6M3W1I6	8.3e-38	100.00	50S ribosomal protein L33, chloroplastic OS=Cucumis melo OX=3656 GN=rpl33 PE=3 S...	[more]
G3ETR8	2.2e-30	100.00	50S ribosomal protein L33, chloroplastic OS=Cucumis melo subsp. melo OX=412675 G...	[more]
A0A249RZI5	2.2e-30	100.00	50S ribosomal protein L33, chloroplastic OS=Cucumis melo var. cantalupensis OX=3...	[more]
A0A109WXY7	2.2e-30	100.00	50S ribosomal protein L33, chloroplastic OS=Gynostemma pentaphyllum OX=182084 GN...	[more]
A0A1Y0B5C5	2.2e-30	84.81	50S ribosomal protein L33, chloroplastic OS=Hansenia forbesii OX=165499 GN=rpl33...	[more]

BLAST of HG10008822 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00640.1	1.8e-29	86.36	ribosomal protein L33	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001705	Ribosomal protein L33	TIGRFAM	TIGR01023	TIGR01023	coord: 14..78 e-value: 1.4E-19 score: 68.2
IPR001705	Ribosomal protein L33	PFAM	PF00471	Ribosomal_L33	coord: 22..78 e-value: 4.6E-22 score: 78.2
IPR001705	Ribosomal protein L33	HAMAP	MF_00294	Ribosomal_L33	coord: 20..78 score: 18.075918
IPR038584	Ribosomal protein L33 superfamily	GENE3D	2.20.28.120	Ribosomal protein L33	coord: 15..79 e-value: 1.2E-30 score: 107.5
None	No IPR available	PANTHER	PTHR43168	50S RIBOSOMAL PROTEIN L33, CHLOROPLASTIC	coord: 14..78
IPR018264	Ribosomal protein L33, conserved site	PROSITE	PS00582	RIBOSOMAL_L33	coord: 46..65
IPR011332	Zinc-binding ribosomal protein	SUPERFAMILY	57829	Zn-binding ribosomal proteins	coord: 16..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10008822.1	HG10008822.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome