HG10008790 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10008790
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	exosome complex component RRP4 homolog
Location	Chr10: 26083443 .. 26092052 (+)
RNA-Seq Expression	HG10008790
Synteny	HG10008790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTATCCAGGTTGCTCCAAAACGTTGGAGATTGGATATACATTATAGCCAAGATGCTGTTTTGATGCTTTCTTCGATGAACTTGCCTGATGGTATTCAGGTATTAGAGAATTCCCTTTTGTTATGGAAATCATGGTGCGTACTGCTGCACCAGAGGGATAATTAGTTATGCCTTCTCTTCTTCTTCTTCAGAACTGCAAAATTGCTGCAACTGATCTTCCTCCTCTTCTGCTTCTTCCTTTTTTTGTCCTAAAGAGTGGTTGCATTTGTTGTAACTCTGGATTAATTGTATTTTTTTTATTTCTAGAGAGGCGAACTGCAGTTGATGAACTCAACATGCGGAGCATTTTTTTAAGAAAATGATGTTATTTGTGTAAGTTTTATTGCTTTTACTGTTTCTTATCCAAAAAAGTTCTATAGTTTTTACTTTCACCTATCACCGTCAGAAGAAAGAATATATGATTTCTCACGTATCATACGTATAATATAAGATTTTCTCCTATATTTTTACATTTTTGAAAAATTAAACTTTATGATGTTTCTTCCCGGGGGGAGGGGCGGACAATCCTTAGTTAGGCTGAAGATTTGCTAGACAAAATATTTCTTATTAATCTCTGTACAACGAGTACAGCCTAAGTTGAAAATGAATAAGGTAATATGCCAACGGTATCAATGAGAGATAGTTTCTTATCCAAAAAAATAATGAGAGAGAGTAAGGAAACAAATACAAAGAAAGGAAATTACAGGGAAGGCAATATCTAAAGAATAAAAGGAAGAAAGTTTCCTATTCTCAACATAGCCAAATGTATTAGGGTTAAGCAATTGTCCTGAGAATAGTTGAGATATATTCAAGCTGGCCTAAACACTAATAGATATAAAAAAAAGTTCACTCTTACATAGGATACCATGGAATTAGAATGGACCATTAGGCCAAAGCAGGATGGTTATGGACTTGTAAAAAGTATAGTGCATAGGCTCCGACACATTAGATAGGTTGATGCATTTTTGGCATCTTGCCCAGTTCTGGCCAGGTGTCTTAGCTCAAATGCCTTTTTCTTTTGTGCCTAGTTGCTCTTCACCGAGGTCCCAAAATTTTCTTGACATTCTAATGTTGCTGTAGGCGTCTTTAACTCAAGTGTCTATTTGTGCCTCTTGCCCTTTTACTTTATGTAAGTGATGCAATATATATCCCTTATTGCTTCTTTTCTCACCTCTCTGAAACTCAAGTCAAGCCTTGTGCCTTGCGCAAAGGCTTGAAGAGATGTACTTTGGCACCTCTGTTTACCATGCACTTTAATTGATAAACACCACTCTCATTAGTAATTGTTCATGCATAATTTTCCATTTAAGAAAAAATAACATCACCCCATCTTTTCTCAGGCAGAAGTACGTGGTTTTCAGCATGATGGGCTACACCTTCAAGCAAGAAGCCAGAAGTATGGGAAAGTAAAAAGTCTCTTTCTTAAGCTCCTGGATGTTGATGTAGAAACAAAATAAGTTCTAAAATCAAATTTTTGAGTGACTCTCACATCTTCACTGGTTTCTTAGGAGAGAGTCCATGGAAAGATTCTTGATAGCATGTGAATACTGATTCATAGACGAATCTTGCGCAAATTTTAGTGGTTAAAACGAACTGAGGAGGTGATTATAAAGGTTTTACACAGGAATAACTGAATAAGGGAGAAAGCCAGGAAGGAATGTCATTAAGGTGAAAAGACTGATGGGTGGAAATATTTAGTGATTATAAAAAGGAGCTAGCAGACAGGTGGGAAGCAAAAATGTAAAAGATAGCAATAGAAAACTGATCCTTTGCTAAGGCGAGAATGGCTATAACACAATCTTGAAGGAGGCTACCTATATTTGATATGATATCTTCGATGCAATAGTTATTGGTTATTATGTTCCTAACAACTTTTCTGGTATCAGCTCATCTTGCTTCTTTATGACTTGTGAATAAGATTTGTGCATTTGTATCCTCAGCTTGAACGTGGTCAGCTTCTAACAATTTCACCATATCTAGTAAAGAGACGCAAACAACACTTCCATCATTTGGAGCAGTATGGTATTGACATAATACTTGGATGCAATGGATTTATCTGGATTGGGGAGCATGTCGATCCTACAGAGGACATGATGATAGAAGATCAAGTTAATAAATCTGAACAAAAGGGTTCAAAATTTGAAGGAACTTTTGGTAACCAAATGCAAGAAAGAGTATATACACCATTAGAGACACGACAGAATATATGCAGAACTGCAAATGCTATTCGAGTATTGTCTATCTTAGGTTTTATAATAACAGTAGAAGTCATAATGGAGACAGTTAGTCTAAGTATTTCTCTGAACATCAATGTGCATGAAATGCTTGGTTCGGAGTTCTTTCAAAATTGTGTGTAATTTGAATCACTCCTAATGTAAATTTTGTTACAAATCGTTTGATTTGCAGAGGGATTTTAGATTACCACCACTTGGCCTGTTAGTGTTAAAAGTATAGAATGCAATATTTGCTTAATTATTTGGTAGTACGTGGTTTCATAAATGTCTAGCATGCAAATTAATATGGCATTGCAGAGAAGAAATGAGATTTCAAATTCAATCAACATTAAACCCCATTGTTATCATCGTGACACATAACCCACCTAACAACAATCAAAAGAAAGCTTGCCTAAAAAAAACATAATCAAATGAAAGAATAAACCCTAAACCCTTAGACAAAATCAGTTGAGCAGTGATTTCTCCCGCACTTCAAATCTTTCAATTTCCTAACACTTTTTTCTTGGTTAGAAACGAAAGAAAAATACTCATTTGACTTCATTAAACTTTGTATTGAAGATTGATATTGTAATAGTCCGAGTTTAGGAAGGGGACATGAATGAACTAAGATCACATCTGAATGAGAGAGATCTCGGAGACATGATTGTATAGTTAAGAAAGGCTTAAAAGATCGCATCCGAATGAGAGAGATTCCTTTTCGGTGGCTGTTAAGCGTGCTTAGCTTAGAGCAATCCTATGTTGGGTGATTAGTGGCTCAATCATAAGAACTCCACAGTGCCTAGCTTGGAGCAATTCTATGTTAGGTGATCTCCTGGAAATTTTCTTAATGATGCATGTGAGTGAGTACAAAGCAAGCTGAAAAGATTCGTGTTGGTTTGTGGCGACAACTTTCACTCTTAGAAGCATTCAAGATAAGTAAGGATGACGTAGCCGAGGCCATTAAGTACCGAATTTGGATTCCGAATCCTGAACCTGGGGTATTATAGATATAGAGTACTCTTTCCCATGACGTCCATTGTTGTTTCATGTGAAGTAGGTCATCCTAACAACATAGAATTACAATGGTAAAGATTGTCATCCAAGAACTCACAAAATGAGAAAAAATCTAGCTATAATAATAAACACAACCTAATAAACCTATTTTAATTAATTAAAAATGATATAATCTTTAGTTTTCAAACCCATTAAAAATAATATCTCCAACCGAATATTCAAGTAACTATTTTATTTTGAAATTCAGCAAAAAAAAAAAAGAAAGCGTTTGCAGAATGGGGCATATTGTAGAGATATTAGCACAATATTGAGAGAGAAAGGGCAGTTTTACGTAGCTTTGAAGATTAAAGTACTCTACTACTACTACTATACTATACATGTAGATGGTAATTTTAATAATTGGTAAAGGAAAAGGCGACATCTTCATCACGAAGAAAAGTAGGATTGGAAATTGACTTTTATAGGAACCTTTGAATGAAGTATTTTATTATTATTTTTTTTTTTTTCTGCTTTTTTTCTGTCTGAAAAAATAAACAATAGATGAGGGAAGAAAAGAAAGGAGAACTTTGAAGGTGTATCTTTCTTTCTGAGCCAATCGACTTTTGAAAAATGCATATAATTTCATAAACAAAGTTTGTGAAAGAAGGGGATGCTGCTATTTGGGTTTCCTGCTCTTTCACCAAAGTCGCACTTAAGAAGAGCTTTATGTGTCATCTTTCCACTCAACAAAAATTTGCTTCTCCCCTTCCTTAATTACAACGCACTCACATGCAAATCATCTTCAATCCAAAACCCAAACCCAAAACTTAACACTAATTAATACAATAACAGAATTGATTAAAAGATGTATTATGGGTGGTAAGTAATTATTAAAGTTAAAAACAATAGCGTCCCGTCGACCACCATTTTGGTTATTAAAATGGGAAGGGAGAAAGAAAAGTGTGGTTATTAGAGCGGCTTTATCTCTTTATTCACAATCACAACAATCCCAGTGTTTGTACTTTCGGATGTGTTATATATATATATATATATATATATATATATATATATATATATATGAAGAAGGAAGAAGGAAGAAGTAAGAAGTAAGAAGAAGAGAAGTAATTAGGGGAAAGAGAGGATTATATTAGGATAGGGAATGATGAGAAGATTGCCTCCTGGGTTTCGTTTTGAGCCAACGGAAGAAGAGCTTGTATTTGAGTATCTTAAATGCAAGGTATTCTCCTCTGCCTTGCCTGCTTCTATCATTCCAGAGATCAATGGTGTTTGGAATTTGGATCCTTGGGATATTCCTCCAGGTAATTTACGTTCATTAATTTTTTATTTTGATTCATTTTGGTTTTATACTTTTTAAAATGTTCATTTTAGTCATTGAACTTTTAACTTTCATTTATTTTGGTCTTGTAAAAAATGAAAATAGAAGAACCAACTTTCATTTATTTTGGTCTTGTAAAAAATGAAAATAGAAGAACCAAAATGGTCACTTTTTAAAATTATAAAGACTAAAATGAACAAAAATTAAAAATATAGGGACCAAAATAGTATCTATAGCTTTAATATGGTATGATATTTAATAATAAGTAAATTTAACGTTGTAGGTGGTGGAGGAAGGGAGGAAGAGAAATACTTATTCAGCAGGAAGGAGGCGGCGGAGGAATATAATAATAATAATAATAATAATATGGGAATAGTTGGATGGAGTAGGAGTGGGTATTGGAAAGCGAGAGGATGGGAGAAGGAAATAGTAAGTAATGAAATTGGAGTTGCATTGGTAGGGATGAAGAAGACTCTGGATTTCTGTACCATTATTGGAAGCAGCAGCGGCAGCAGGAGGAAGACGAAGAAAACAGGGTGGGTGATGTATGAGTATCGCCTCCTCCTTCAACCACATTATTCCTATTCAAATATTAATTTGGAGAATAATAAATGGGTTCTTTGCCGAATTTTTTGCAACAAATTCAATGAAGATCATATTATTCACCGCCGTCTTCATTATTCTATTTCTTCTACAAACCATATGAATCAGGAACAGGATGATCACCTCATCATCACTCCTCTCTCCGACGACGATGGTTCTGTTTCCTCCACCGCCTCTTCCTCATCCACCTCCGCCGCAACGGCCACTACAACTACGACAATATTGCCCAGCTGCAACCATCCTTTTTCTCCTTCTATTTAGAAAAAAAATTCATCATTATTATATATATTTATGCTTCTTCTTATATTATATCTATCTATCTATCCATTTTCCTTTCCTTTCCTTTTTCTTTTCTTTTTTAGATCATATTATTGCTACTAAATATTACTAACTACTACATAATCAGTCTTGCCTATATAATTCAACTCAATACGCATTACTCATCACTACATGCATCTACAAATTTAAATCATTCTTTTAAACACAATTAATTTAATACTTCTGCAATTAATACGTCACATTTCCATTTCCTATTGCTCCTTAACATAATACTACTACAAAAATAATACTTATATCCATTCCGAATATCACCCATTTTTGTGCATTCCATCCAATTATTTAATTAATCACAATTTGACAAAGTAGCAAATTTTTTTTTATTTTTTTATTATTATTATTTTTTTTTTATGTGTGTGTGTGAGTGATGATAAATAATGCATAAAAATAGGTGGATCTTGGGATGCATTGAGTATTACACATACTACTATTGATTTCTTAAATAAATAATATGATAAAATGTCATTTTGTTGGTACATATACTTTGGAGTTTGTTCAATTTTAGTCTTTATATTTTCAATTGTCTAATTTTAGTCCTTGTATTTTCAATAAATCTTAAATTTAGTTCCTACTACTAGATTATTGGGATTTTTTTTTGTTACTTTTTAATTTTTTATTAGCATTTTCACTATAAATTTTGAAAACATATTCACTGTGTTTCTTTGTATGAAAATTATTGTTATTATTTAATAAATTTCGATCAAAATTCAAATTTAAGATTTACTTAAAGTAGATGGACTAAAATTAGACATTTGAAAGTATAAACACTAAAATTAAACAAATCTCAAAGTACAAATACCAAAATAGTATTTTAACCTAAATAATACTACTATTGATGATAGTATGACTTTTAAACTAAAGATATACACTTCAAATTTCAATAAGAGAAATACTTAATTGAATACAAGTCATCACTTATCTTTATGCATTCTAGTAAATTGTCCAATCTTATTTGAAATATTTTAATTCTTTTTTTTTTTTTTTTGTGTGTGTGATAAGAGTGAAATGCATGAAGATGAGTGCATCTTGTATTCTTCTCTCGATAAAGTATATTTTTTTACCTTAAAAACTTCCAATTTTAGTAAATCAGTGTTGCAATATTTACCCTAACTTTGAATAATTATGGTATCTTTTACCATCTATGGACTTTCATTTAAAACATCATCCATAATAGTGTTTTCATGTGCATAATGATTATAAAACATATATTGAGTACAAAATTAATAGAACTTCAAAGGACTCATTTTTAGAGGTATGCAGTTGAAATTGGATATGAAATTTTATTAAGGCTCTATTTGATAGTCATTTTAGTTTTGATTTTCTATTTTTAAAACTTTCTACTTCTTTCTTAATAAAGTTTCACACCTTCCTTAAAAACACATTTGAATTCTAAGCAATATTTCTTTTAGACCTATCAAAACCTAGTATCGATGTGACGCTGGATTGCATACACTCTAAATCTTAAATTAGTATATGGCGAACTTAGCTCTGGTTACCTTTGCATAAATGAATGGCGATCCATATTTCTTTTTCCTTATAAAATTGTCAGTTTTGGTTGTGTTATTTAGTAGGTCGGGTTTTTTTTTTTTTTTTTTTTGCCAATTTAATTAATTAGTCAGTTTCTTTAGTTTTTTGATACTGGGATAAAAGTTGATATTGGATATTGATACAGGCTGTAAGTTTAGGATAAAAATTGGTAGTAAATATTAAGTTATAATAAAATAAATGAACTGTAAAAACAGGTGTGGACAGTTGGAAATGTTGAGTGGCCTCTAATTTTGGAGAATAGGGAATTGAAAAAGGAAATATTGTTGAATATCCAGAAGGAATGAGGAAAGCGTAGAAGATAACAAACAAAGTATCTAGAAGTACTTAAAAGATCACAGAAGCTCATACCTTTAATTTTCTGTTTTTTACTATTTTTAGTGCATCTAAATTTCTACCAACAGACTGTCACAATGCCATATGTCCTATTCTTGTTTCCAAAACAGTTGCGAATTCTCTCTTTCAAATTCTCTGTTTTTGTCTTTAAGCTTTCTTCATCTCATCCTTTTTTTTCTGTGTCTCTGTTGTGCAACTCAAATGCAATGGGTTGTGGAAACTCCAAGCTTAATCCGGAAGGAGAATTGATTCCTCCCAGGATTCGCCCACTTCTTCTCCGGAGTAAATTTATGGAGTTGAGGAAACGTAAGAATGGAACCAATCTTAGAGATGGAACGCTGTCAAAGAAAGTGCTTTTGAAAGATGGAGAATCAGAAGAAAACTCCATGCTTGTTGATAACAGGAAGAGTATGTGTTGTTCACATGAAGGCAGCACAAATGAACATGATTCAGCTTCAGCTATTCCCCTATCTAACAATGCAACCAAAGATGGGGAACAGAGCAATCATCTCTTGGAGGAGGTGCCTCTGACAAACGTACAATTGAAAACTATCCACCCTGATGAAACTCCTGATCTTGAACTGAAACAAGACAAAACAATGGATGACCATAAATGTATCCAACAAGGAGATGATAACAAGAAAGAAGGAGAAGAGGGGAGGGCTGACAACGAAGAGAATCGCGGCTTCATCTGTCCTGGATCTCCCAGTTTCAGAGTTTATTTTGTTGAAGAAACACAAGATGACAAAGAAAATGGTAAACTAAAACAAAACAAGACTTTCAAGCCAGATGTAGAAATCATTATGTATTATAACCAAATACAATATCTATATACATATTGTGCAGTTGAAATGAAAGATGCAGGTATGGAAGATGTCTCACACAAGAAGTCGCCAAGTCATGACAGCGTTGAGAGCTCCACTAGTGCAAAATCTGTCGAGGTGGGTTCGCACATTCTCATCTTTAGAAGATTTGGTGTTTGGGATTTTTGTTTGTGTTTCTCTCATTGATTTGATTTCACTTGAACAGGGCCAGGAGAACAAGGTGATGAAGAAAGGGAAAAAAGGAACCACTTTCAATAGGGTCATCAGTAAAAAAAGACCAGTTGGTGTTGGTGTGAAGAATCTGTTGAATGTTAAATCTTGCTATCATTTAAGTTGTTCTGGCAATGACAGAGCCAGTCTTCTAGCTAGAAAAGCCGAAGCTTAA

mRNA sequence

CTTATCCAGGTTGCTCCAAAACGTTGGAGATTGGATATACATTATAGCCAAGATGCTGTTTTGATGCTTTCTTCGATGAACTTGCCTGATGGTATTCAGCTTGAACGTGGTCAGCTTCTAACAATTTCACCATATCTAGTAAAGAGACGCAAACAACACTTCCATCATTTGGAGCAGTATGGTATTGACATAATACTTGGATGCAATGGATTTATCTGGATTGGGGAGCATGTCGATCCTACAGAGGACATGATGATAGAAGATCAAGTTAATAAATCTGAACAAAAGGGTTCAAAATTTGAAGGAACTTTTGGTAACCAAATGCAAGAAAGAGTATATACACCATTAGAGACACGACAGAATATATGCAGAACTGCAAATGCTATTCGAGTATTGTCTATCTTAGGTTTTATAATAACAGTAGAAGTCATAATGGAGACAAGGGATTTTAGATTACCACCACTTGGCCTGGATGAAGAAGACTCTGGATTTCTGTACCATTATTGGAAGCAGCAGCGGCAGCAGGAGGAAGACGAAGAAAACAGGACTGTCACAATGCCATATGTCCTATTCTTGTTTCCAAAACAGTTGCGAATTCTCTCTTTCAAATTCTCTGTTTTTGTCTTTAAGCTTTCTTCATCTCATCCTTTTTTTTCTGTGTCTCTGTTGTGCAACTCAAATGCAATGGGTTGTGGAAACTCCAAGCTTAATCCGGAAGGAGAATTGATTCCTCCCAGGATTCGCCCACTTCTTCTCCGGAGTAAATTTATGGAGTTGAGGAAACGTAAGAATGGAACCAATCTTAGAGATGGAACGCTGTCAAAGAAAGTGCTTTTGAAAGATGGAGAATCAGAAGAAAACTCCATGCTTGTTGATAACAGGAAGAGTATGTGTTGTTCACATGAAGGCAGCACAAATGAACATGATTCAGCTTCAGCTATTCCCCTATCTAACAATGCAACCAAAGATGGGGAACAGAGCAATCATCTCTTGGAGGAGGTGCCTCTGACAAACGTACAATTGAAAACTATCCACCCTGATGAAACTCCTGATCTTGAACTGAAACAAGACAAAACAATGGATGACCATAAATGTATCCAACAAGGAGATGATAACAAGAAAGAAGGAGAAGAGGGGAGGGCTGACAACGAAGAGAATCGCGGCTTCATCTGTCCTGGATCTCCCAGTTTCAGAGTTTATTTTGTTGAAGAAACACAAGATGACAAAGAAAATGTTGAAATGAAAGATGCAGGTATGGAAGATGTCTCACACAAGAAGTCGCCAAGTCATGACAGCGTTGAGAGCTCCACTAGTGCAAAATCTGTCGAGGGCCAGGAGAACAAGGTGATGAAGAAAGGGAAAAAAGGAACCACTTTCAATAGGGTCATCAGTAAAAAAAGACCAGTTGGTGTTGGTGTGAAGAATCTGTTGAATGTTAAATCTTGCTATCATTTAAGTTGTTCTGGCAATGACAGAGCCAGTCTTCTAGCTAGAAAAGCCGAAGCTTAA

Coding sequence (CDS)

CTTATCCAGGTTGCTCCAAAACGTTGGAGATTGGATATACATTATAGCCAAGATGCTGTTTTGATGCTTTCTTCGATGAACTTGCCTGATGGTATTCAGCTTGAACGTGGTCAGCTTCTAACAATTTCACCATATCTAGTAAAGAGACGCAAACAACACTTCCATCATTTGGAGCAGTATGGTATTGACATAATACTTGGATGCAATGGATTTATCTGGATTGGGGAGCATGTCGATCCTACAGAGGACATGATGATAGAAGATCAAGTTAATAAATCTGAACAAAAGGGTTCAAAATTTGAAGGAACTTTTGGTAACCAAATGCAAGAAAGAGTATATACACCATTAGAGACACGACAGAATATATGCAGAACTGCAAATGCTATTCGAGTATTGTCTATCTTAGGTTTTATAATAACAGTAGAAGTCATAATGGAGACAAGGGATTTTAGATTACCACCACTTGGCCTGGATGAAGAAGACTCTGGATTTCTGTACCATTATTGGAAGCAGCAGCGGCAGCAGGAGGAAGACGAAGAAAACAGGACTGTCACAATGCCATATGTCCTATTCTTGTTTCCAAAACAGTTGCGAATTCTCTCTTTCAAATTCTCTGTTTTTGTCTTTAAGCTTTCTTCATCTCATCCTTTTTTTTCTGTGTCTCTGTTGTGCAACTCAAATGCAATGGGTTGTGGAAACTCCAAGCTTAATCCGGAAGGAGAATTGATTCCTCCCAGGATTCGCCCACTTCTTCTCCGGAGTAAATTTATGGAGTTGAGGAAACGTAAGAATGGAACCAATCTTAGAGATGGAACGCTGTCAAAGAAAGTGCTTTTGAAAGATGGAGAATCAGAAGAAAACTCCATGCTTGTTGATAACAGGAAGAGTATGTGTTGTTCACATGAAGGCAGCACAAATGAACATGATTCAGCTTCAGCTATTCCCCTATCTAACAATGCAACCAAAGATGGGGAACAGAGCAATCATCTCTTGGAGGAGGTGCCTCTGACAAACGTACAATTGAAAACTATCCACCCTGATGAAACTCCTGATCTTGAACTGAAACAAGACAAAACAATGGATGACCATAAATGTATCCAACAAGGAGATGATAACAAGAAAGAAGGAGAAGAGGGGAGGGCTGACAACGAAGAGAATCGCGGCTTCATCTGTCCTGGATCTCCCAGTTTCAGAGTTTATTTTGTTGAAGAAACACAAGATGACAAAGAAAATGTTGAAATGAAAGATGCAGGTATGGAAGATGTCTCACACAAGAAGTCGCCAAGTCATGACAGCGTTGAGAGCTCCACTAGTGCAAAATCTGTCGAGGGCCAGGAGAACAAGGTGATGAAGAAAGGGAAAAAAGGAACCACTTTCAATAGGGTCATCAGTAAAAAAAGACCAGTTGGTGTTGGTGTGAAGAATCTGTTGAATGTTAAATCTTGCTATCATTTAAGTTGTTCTGGCAATGACAGAGCCAGTCTTCTAGCTAGAAAAGCCGAAGCTTAA

Protein sequence

LIQVAPKRWRLDIHYSQDAVLMLSSMNLPDGIQLERGQLLTISPYLVKRRKQHFHHLEQYGIDIILGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGSKFEGTFGNQMQERVYTPLETRQNICRTANAIRVLSILGFIITVEVIMETRDFRLPPLGLDEEDSGFLYHYWKQQRQQEEDEENRTVTMPYVLFLFPKQLRILSFKFSVFVFKLSSSHPFFSVSLLCNSNAMGCGNSKLNPEGELIPPRIRPLLLRSKFMELRKRKNGTNLRDGTLSKKVLLKDGESEENSMLVDNRKSMCCSHEGSTNEHDSASAIPLSNNATKDGEQSNHLLEEVPLTNVQLKTIHPDETPDLELKQDKTMDDHKCIQQGDDNKKEGEEGRADNEENRGFICPGSPSFRVYFVEETQDDKENVEMKDAGMEDVSHKKSPSHDSVESSTSAKSVEGQENKVMKKGKKGTTFNRVISKKRPVGVGVKNLLNVKSCYHLSCSGNDRASLLARKAEA

Homology

[Close]

BLAST of HG10008790 vs. NCBI nr
Match: XP_008464387.1 (PREDICTED: uncharacterized protein LOC103502290 [Cucumis melo])

HSP 1 Score: 409.1 bits (1050), Expect = 5.6e-110
Identity = 225/291 (77.32%), Postives = 251/291 (86.25%), Query Frame = 0


Query: 229 MGCGNSKLNPEGELIPPRIRPLLLRSKFMELRKRKNGTNLRDGTLSKKVLLKDGES-EEN 288
           MGCGNSKLNPEGEL+PPRIRPLL+R+KF+ELRKRKNGT+LRDG LSKKVLLK+GES EEN
Sbjct: 7   MGCGNSKLNPEGELVPPRIRPLLVRNKFLELRKRKNGTHLRDGALSKKVLLKEGESEEEN 66

Query: 289 SMLVDNR----KSMCCSHEGST------NEHDSASAIPLSN---NATKDGEQSNHLLEEV 348
           +M VDNR     + C + +  T      +EH+SAS IP SN   NATK+GEQSN +LEE 
Sbjct: 67  AMFVDNRHECGSTKCLASQQHTINNATKDEHNSASTIPPSNNDANATKNGEQSNRILEEE 126

Query: 349 PLTNVQLKTIHPDETPDLELKQDKTMDDHKCIQQGDD-NKKEGEEGRADNEENRG-FICP 408
           P  ++QLKT HPD+TP LELKQDKTM++HKCIQ+GD+ NKKEGE+GR DNEENRG  ICP
Sbjct: 127 PRPHIQLKTTHPDDTPVLELKQDKTMNEHKCIQEGDENNKKEGEDGRPDNEENRGSIICP 186

Query: 409 GSPSFRVYFVEETQDDKENVEMKDA-GMEDVSHKKSPSHDSVESSTSAKSVEGQENKVMK 468
           GSPSFR YFVEETQDDKE VEMKDA GM DVSHKKSPSHDSVES+TSAKS EGQENKV+K
Sbjct: 187 GSPSFRFYFVEETQDDKEKVEMKDAGGMGDVSHKKSPSHDSVESTTSAKSGEGQENKVIK 246

Query: 469 KGKKGTTFNRVISKKRPVGVGVKNLLNVKSCYHLSCSGNDRASLLARKAEA 503
           KGKKGTTFNRVISK+RPV VGVKNLLNVKSCYHLSCSGNDRA+LLARKAEA
Sbjct: 247 KGKKGTTFNRVISKRRPVSVGVKNLLNVKSCYHLSCSGNDRANLLARKAEA 297

[Close]

BLAST of HG10008790 vs. NCBI nr
Match: KAA0057746.1 (ABC transporter F family member 4-like [Cucumis melo var. makuwa] >TYJ98429.1 ABC transporter F family member 4-like [Cucumis melo var. makuwa])

HSP 1 Score: 409.1 bits (1050), Expect = 5.6e-110
Identity = 225/291 (77.32%), Postives = 251/291 (86.25%), Query Frame = 0


Query: 229 MGCGNSKLNPEGELIPPRIRPLLLRSKFMELRKRKNGTNLRDGTLSKKVLLKDGES-EEN 288
           MGCGNSKLNPEGEL+PPRIRPLL+R+KF+ELRKRKNGT+LRDG LSKKVLLK+GES EEN
Sbjct: 1   MGCGNSKLNPEGELVPPRIRPLLVRNKFLELRKRKNGTHLRDGALSKKVLLKEGESEEEN 60

Query: 289 SMLVDNR----KSMCCSHEGST------NEHDSASAIPLSN---NATKDGEQSNHLLEEV 348
           +M VDNR     + C + +  T      +EH+SAS IP SN   NATK+GEQSN +LEE 
Sbjct: 61  AMFVDNRHECGSTKCLASQQHTINNATKDEHNSASTIPPSNNDANATKNGEQSNRILEEE 120

Query: 349 PLTNVQLKTIHPDETPDLELKQDKTMDDHKCIQQGDD-NKKEGEEGRADNEENRG-FICP 408
           P  ++QLKT HPD+TP LELKQDKTM++HKCIQ+GD+ NKKEGE+GR DNEENRG  ICP
Sbjct: 121 PRPHIQLKTTHPDDTPVLELKQDKTMNEHKCIQEGDENNKKEGEDGRPDNEENRGSIICP 180

Query: 409 GSPSFRVYFVEETQDDKENVEMKDA-GMEDVSHKKSPSHDSVESSTSAKSVEGQENKVMK 468
           GSPSFR YFVEETQDDKE VEMKDA GM DVSHKKSPSHDSVES+TSAKS EGQENKV+K
Sbjct: 181 GSPSFRFYFVEETQDDKEKVEMKDAGGMGDVSHKKSPSHDSVESTTSAKSGEGQENKVIK 240

Query: 469 KGKKGTTFNRVISKKRPVGVGVKNLLNVKSCYHLSCSGNDRASLLARKAEA 503
           KGKKGTTFNRVISK+RPV VGVKNLLNVKSCYHLSCSGNDRA+LLARKAEA
Sbjct: 241 KGKKGTTFNRVISKRRPVSVGVKNLLNVKSCYHLSCSGNDRANLLARKAEA 291

[Close]

BLAST of HG10008790 vs. NCBI nr
Match: XP_011649820.1 (probable DNA-directed RNA polymerase I subunit RPA43 isoform X1 [Cucumis sativus])

HSP 1 Score: 397.9 bits (1021), Expect = 1.3e-106
Identity = 221/292 (75.68%), Postives = 245/292 (83.90%), Query Frame = 0


Query: 229 MGCGNSKLNPEGELIPPRIRPLLLRSKFMELRKRKNGTNLRDGTLSKKVLLKDGES-EEN 288
           MGCGNSKLNP GEL+PPRIRPL +R+K +ELRKRKNGT+LRDG LSKKVLLKDGES EEN
Sbjct: 1   MGCGNSKLNPGGELVPPRIRPLHVRNKLLELRKRKNGTHLRDGALSKKVLLKDGESEEEN 60

Query: 289 SMLVDNR----KSMCCSHEGSTN-------EHDSASAIPLSNN---ATKDGEQSNHLLEE 348
           +M VDNR     + C + +  TN       EH+SAS IP SNN   ATK GEQSNH+LEE
Sbjct: 61  AMHVDNRHECGSTKCLASQQHTNNNNATKDEHNSASTIPPSNNNASATKTGEQSNHILEE 120

Query: 349 VPLTNVQLKTIHPDETPDLELKQDKTMDDHKCIQQGDD-NKKEGEEGRADNEENRG-FIC 408
            P  ++QLK  HPD+TP LELKQDKTM++HKCIQ+GD+ NKKEGE+GR DNEENRG FIC
Sbjct: 121 EPQPHIQLKATHPDDTPVLELKQDKTMNEHKCIQEGDENNKKEGEDGRPDNEENRGSFIC 180

Query: 409 PGSPSFRVYFVEETQDDKENVEMKDA-GMEDVSHKKSPSHDSVESSTSAKSVEGQENKVM 468
           PGSPSFR+YFVEETQDDKE VEMKDA GM DVSHKKSPS DSVES+TSAK  EGQENK +
Sbjct: 181 PGSPSFRLYFVEETQDDKEKVEMKDASGMGDVSHKKSPSRDSVESTTSAKCDEGQENKAI 240

Query: 469 KKGKKGTTFNRVISKKRPVGVGVKNLLNVKSCYHLSCSGNDRASLLARKAEA 503
           KKGKK TTFNRV+SKKRPV VGVKNLLNVKSCYHLSCSGNDRA+LLARKAEA
Sbjct: 241 KKGKKETTFNRVVSKKRPVSVGVKNLLNVKSCYHLSCSGNDRANLLARKAEA 292

[Close]

BLAST of HG10008790 vs. NCBI nr
Match: KAE8652373.1 (hypothetical protein Csa_013810 [Cucumis sativus])

HSP 1 Score: 295.4 bits (755), Expect = 9.1e-76
Identity = 179/290 (61.72%), Postives = 199/290 (68.62%), Query Frame = 0


Query: 229 MGCGNSKLNPEGELIPPRIRPLLLRSKFMELRKRKNGTNLRDGTLSKKVLLKDGES-EEN 288
           MGCGNSKLNP GEL+PPRIRPL +R+K +ELRKRKNGT+LRDG LSKKVLLKDGES EEN
Sbjct: 1   MGCGNSKLNPGGELVPPRIRPLHVRNKLLELRKRKNGTHLRDGALSKKVLLKDGESEEEN 60

Query: 289 SMLVDNR----KSMCCSHEGSTN-------EHDSASAIPLSNN---ATKDGEQSNHLLEE 348
           +M VDNR     + C + +  TN       EH+SAS IP SNN   ATK GEQSNH+LEE
Sbjct: 61  AMHVDNRHECGSTKCLASQQHTNNNNATKDEHNSASTIPPSNNNASATKTGEQSNHILEE 120

Query: 349 VPLTNVQLKTIHPDETPDLELKQDKTMDDHKCIQQGDDNKKEGEEGRADNEENRGFICPG 408
            P  ++QLK  HPD+TP LELKQDKTM++HK                             
Sbjct: 121 EPQPHIQLKATHPDDTPVLELKQDKTMNEHK----------------------------- 180

Query: 409 SPSFRVYFVEETQDDKENVEMKDA-GMEDVSHKKSPSHDSVESSTSAKSVEGQENKVMKK 468
                              EMKDA GM DVSHKKSPS DSVES+TSAK  EGQENK +KK
Sbjct: 181 ------------------FEMKDASGMGDVSHKKSPSRDSVESTTSAKCDEGQENKAIKK 240

Query: 469 GKKGTTFNRVISKKRPVGVGVKNLLNVKSCYHLSCSGNDRASLLARKAEA 503
           GKK TTFNRV+SKKRPV VGVKNLLNVKSCYHLSCSGNDRA+LLARKAEA
Sbjct: 241 GKKETTFNRVVSKKRPVSVGVKNLLNVKSCYHLSCSGNDRANLLARKAEA 243

[Close]

BLAST of HG10008790 vs. NCBI nr
Match: XP_022921428.1 (uncharacterized protein LOC111429712 [Cucurbita moschata])

HSP 1 Score: 280.4 bits (716), Expect = 3.0e-71
Identity = 173/290 (59.66%), Postives = 206/290 (71.03%), Query Frame = 0


Query: 229 MGCGNSKLNPEGELIPPRIRPLLLRSKFMELRKRKNGTNLRDGTLSKKVLLKDGE-SEEN 288
           MGCGNSKL PEGE I P IRPLL R+KF E RKRKNGT+LR+  LSKKVLLK+GE  EEN
Sbjct: 1   MGCGNSKLTPEGESILPMIRPLLFRTKFAEFRKRKNGTHLRETALSKKVLLKEGEIEEEN 60

Query: 289 SML-VDNRKSMCCSHEGST-----------NEHDSASAIPLSNNATKDGEQSNHLLEEVP 348
           S+L V NR S+  SH+G T           +EHDS +A              NHLLE+  
Sbjct: 61  SILPVHNRNSIYGSHDGKTICLHTKQENHMDEHDSPNA--------------NHLLEQHK 120

Query: 349 LTNVQLKTIHPDETPDLELKQDKTMDDHK-CIQQGDD-NKKEGEEGRADNEENRGFICPG 408
                      D    +ELK++KTM++ +  +++GDD NK+EGEEGR DNE+NR  ICPG
Sbjct: 121 PN---------DNGTRVELKENKTMNNQRTAVEEGDDENKEEGEEGRPDNEDNRCLICPG 180

Query: 409 SPSFRVYFVEETQDDKENVEMKDAG-MEDVSHKKSPSHDSVESSTSAKSVEGQENKVMKK 468
           SPSFRVYFVE+T +DK+NVEM D G MED S KKSPS DSVESS+S KS EGQENK +KK
Sbjct: 181 SPSFRVYFVEQTPNDKQNVEMNDDGDMEDASLKKSPSRDSVESSSSTKSNEGQENKTIKK 240

Query: 469 GKKGTTFNRVISKKRPVGVGVKNLLNVKS-CYHLSCSGNDRASLLARKAE 502
           GKKGTT NR  S++RPVGVG+K+LLNV + CYHLSC+GNDR + LARKAE
Sbjct: 241 GKKGTTLNRAGSRERPVGVGLKSLLNVNNCCYHLSCTGNDRVNHLARKAE 267

[Close]

BLAST of HG10008790 vs. ExPASy Swiss-Prot
Match: Q9ZVT7 (Exosome complex component RRP4 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP4 PE=1 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 1.0e-37
Identity = 88/192 (45.83%), Postives = 114/192 (59.38%), Query Frame = 0


Query: 1   LIQVAPKRWRLDIHYSQDAVLMLSSMNLPDGIQ--------------------------- 60
           +I+VA KRWR++++++QD VLMLSSMN+PDGIQ                           
Sbjct: 101 VIEVAQKRWRVELNFNQDGVLMLSSMNMPDGIQRRRTSVDELNMRNIFVEHDVVCAEVRN 160

Query: 61  ------------------LERGQLLTISPYLVKRRKQHFHHLEQYGIDIILGCNGFIWIG 120
                             LE+GQLL + PYLVKR K HFH++E  GID+I+GCNGFIW+G
Sbjct: 161 FQHDGSLQLQARSQKYGKLEKGQLLKVDPYLVKRSKHHFHYVESLGIDLIIGCNGFIWVG 220

Query: 121 EHVDPTEDMMIEDQVNKSEQKGSKFEGTFGNQMQERVYTPLETRQNICRTANAIRVLSIL 148
           EHV+  + M I+DQ ++ E   S   G      +E+ + PLETRQ ICR  NAIRVLS L
Sbjct: 221 EHVEVRDPMAIDDQKDE-EMISSSSTG------KEQSHIPLETRQTICRIGNAIRVLSNL 280

[Close]

BLAST of HG10008790 vs. ExPASy Swiss-Prot
Match: Q09704 (Exosome complex component rrp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rrp4 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.8e-10
Identity = 61/205 (29.76%), Postives = 86/205 (41.95%), Query Frame = 0


Query: 1   LIQVAPKRWRLDIHYSQDAVLMLSSMNLPDGIQ--------------------------- 60
           + +V PKRW++DI   Q+AVLMLSS+NLP GIQ                           
Sbjct: 119 IAEVQPKRWKVDIGAKQNAVLMLSSINLPGGIQRRKLETDELQMRSFFQEGDLLVAEVQQ 178

Query: 61  ------------------LERGQLLTISPYLVKRRKQHFHHLEQYGIDIILGCNGFIWIG 120
                             L  G  L + P LV R K H + L   G+DIIL  NG++W+ 
Sbjct: 179 YFSDGSVSIHTRSLKYGKLRNGVFLKVPPALVVRSKSHAYALAG-GVDIILSVNGYVWVS 238

Query: 121 EHVDPTEDMMIEDQVNKSEQKGSKFEGTFGNQMQE-RVYTPLE-TRQNICRTANAIRVL- 154
           +H    E+      + + E++ S  E  + N+  E   YT L  +R +IC    A R L 
Sbjct: 239 KH---NENQHSSVSITRLEEEAS--ESIYSNENDEIDGYTRLNISRVSICIKGLASRSLP 298

[Close]

BLAST of HG10008790 vs. ExPASy Swiss-Prot
Match: Q2KID0 (Exosome complex component RRP4 OS=Bos taurus OX=9913 GN=EXOSC2 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.4e-07
Identity = 40/128 (31.25%), Postives = 56/128 (43.75%), Query Frame = 0


Query: 1   LIQVAPKRWRLDIHYSQDAVLMLSSMNLPDGI---------------------------- 60
           + +V  KRW+++ +   D+VL+LSSMNLP G                             
Sbjct: 88  ITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQA 147

Query: 61  -----------------QLERGQLLTISPYLVKRRKQHFHHLEQYGIDIILGCNGFIWIG 84
                            +L +G L+ +SP LVKR+K HFH L   G  +ILG NGFIW+ 
Sbjct: 148 VFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDL-PCGASVILGNNGFIWVY 207

[Close]

BLAST of HG10008790 vs. ExPASy Swiss-Prot
Match: Q8VBV3 (Exosome complex component RRP4 OS=Mus musculus OX=10090 GN=Exosc2 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.9e-07
Identity = 42/127 (33.07%), Postives = 56/127 (44.09%), Query Frame = 0


Query: 1   LIQVAPKRWRLDIHYSQDAVLMLSSMNLPDGI---------------------------- 60
           + +V  KRW+++ +   D+VL+LSSMNLP G                             
Sbjct: 88  ITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQA 147

Query: 61  -----------------QLERGQLLTISPYLVKRRKQHFHHLEQYGIDIILGCNGFIWI- 80
                            +L +G L+ +SP LVKR+K HFH L   G  +ILG NGFIWI 
Sbjct: 148 VFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDL-PCGASVILGNNGFIWIY 207

[Close]

BLAST of HG10008790 vs. ExPASy Swiss-Prot
Match: Q13868 (Exosome complex component RRP4 OS=Homo sapiens OX=9606 GN=EXOSC2 PE=1 SV=2)

HSP 1 Score: 58.5 bits (140), Expect = 2.4e-07
Identity = 39/119 (32.77%), Postives = 53/119 (44.54%), Query Frame = 0


Query: 1   LIQVAPKRWRLDIHYSQDAVLMLSSMNLPDGI---------------------------- 60
           + +V  KRW+++ +   D+VL+LSSMNLP G                             
Sbjct: 88  ITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQA 147

Query: 61  -----------------QLERGQLLTISPYLVKRRKQHFHHLEQYGIDIILGCNGFIWI 75
                            +L +G L+ +SP LVKR+K HFH L   G  +ILG NGFIWI
Sbjct: 148 VFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKRQKTHFHDL-PCGASVILGNNGFIWI 205

[Close]

BLAST of HG10008790 vs. ExPASy TrEMBL
Match: A0A5D3BHA4 (ABC transporter F family member 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00270 PE=4 SV=1)

HSP 1 Score: 409.1 bits (1050), Expect = 2.7e-110
Identity = 225/291 (77.32%), Postives = 251/291 (86.25%), Query Frame = 0


Query: 229 MGCGNSKLNPEGELIPPRIRPLLLRSKFMELRKRKNGTNLRDGTLSKKVLLKDGES-EEN 288
           MGCGNSKLNPEGEL+PPRIRPLL+R+KF+ELRKRKNGT+LRDG LSKKVLLK+GES EEN
Sbjct: 1   MGCGNSKLNPEGELVPPRIRPLLVRNKFLELRKRKNGTHLRDGALSKKVLLKEGESEEEN 60

Query: 289 SMLVDNR----KSMCCSHEGST------NEHDSASAIPLSN---NATKDGEQSNHLLEEV 348
           +M VDNR     + C + +  T      +EH+SAS IP SN   NATK+GEQSN +LEE 
Sbjct: 61  AMFVDNRHECGSTKCLASQQHTINNATKDEHNSASTIPPSNNDANATKNGEQSNRILEEE 120

Query: 349 PLTNVQLKTIHPDETPDLELKQDKTMDDHKCIQQGDD-NKKEGEEGRADNEENRG-FICP 408
           P  ++QLKT HPD+TP LELKQDKTM++HKCIQ+GD+ NKKEGE+GR DNEENRG  ICP
Sbjct: 121 PRPHIQLKTTHPDDTPVLELKQDKTMNEHKCIQEGDENNKKEGEDGRPDNEENRGSIICP 180

Query: 409 GSPSFRVYFVEETQDDKENVEMKDA-GMEDVSHKKSPSHDSVESSTSAKSVEGQENKVMK 468
           GSPSFR YFVEETQDDKE VEMKDA GM DVSHKKSPSHDSVES+TSAKS EGQENKV+K
Sbjct: 181 GSPSFRFYFVEETQDDKEKVEMKDAGGMGDVSHKKSPSHDSVESTTSAKSGEGQENKVIK 240

Query: 469 KGKKGTTFNRVISKKRPVGVGVKNLLNVKSCYHLSCSGNDRASLLARKAEA 503
           KGKKGTTFNRVISK+RPV VGVKNLLNVKSCYHLSCSGNDRA+LLARKAEA
Sbjct: 241 KGKKGTTFNRVISKRRPVSVGVKNLLNVKSCYHLSCSGNDRANLLARKAEA 291

[Close]

BLAST of HG10008790 vs. ExPASy TrEMBL
Match: A0A1S3CLT6 (uncharacterized protein LOC103502290 OS=Cucumis melo OX=3656 GN=LOC103502290 PE=4 SV=1)

HSP 1 Score: 409.1 bits (1050), Expect = 2.7e-110
Identity = 225/291 (77.32%), Postives = 251/291 (86.25%), Query Frame = 0


Query: 229 MGCGNSKLNPEGELIPPRIRPLLLRSKFMELRKRKNGTNLRDGTLSKKVLLKDGES-EEN 288
           MGCGNSKLNPEGEL+PPRIRPLL+R+KF+ELRKRKNGT+LRDG LSKKVLLK+GES EEN
Sbjct: 7   MGCGNSKLNPEGELVPPRIRPLLVRNKFLELRKRKNGTHLRDGALSKKVLLKEGESEEEN 66

Query: 289 SMLVDNR----KSMCCSHEGST------NEHDSASAIPLSN---NATKDGEQSNHLLEEV 348
           +M VDNR     + C + +  T      +EH+SAS IP SN   NATK+GEQSN +LEE 
Sbjct: 67  AMFVDNRHECGSTKCLASQQHTINNATKDEHNSASTIPPSNNDANATKNGEQSNRILEEE 126

Query: 349 PLTNVQLKTIHPDETPDLELKQDKTMDDHKCIQQGDD-NKKEGEEGRADNEENRG-FICP 408
           P  ++QLKT HPD+TP LELKQDKTM++HKCIQ+GD+ NKKEGE+GR DNEENRG  ICP
Sbjct: 127 PRPHIQLKTTHPDDTPVLELKQDKTMNEHKCIQEGDENNKKEGEDGRPDNEENRGSIICP 186

Query: 409 GSPSFRVYFVEETQDDKENVEMKDA-GMEDVSHKKSPSHDSVESSTSAKSVEGQENKVMK 468
           GSPSFR YFVEETQDDKE VEMKDA GM DVSHKKSPSHDSVES+TSAKS EGQENKV+K
Sbjct: 187 GSPSFRFYFVEETQDDKEKVEMKDAGGMGDVSHKKSPSHDSVESTTSAKSGEGQENKVIK 246

Query: 469 KGKKGTTFNRVISKKRPVGVGVKNLLNVKSCYHLSCSGNDRASLLARKAEA 503
           KGKKGTTFNRVISK+RPV VGVKNLLNVKSCYHLSCSGNDRA+LLARKAEA
Sbjct: 247 KGKKGTTFNRVISKRRPVSVGVKNLLNVKSCYHLSCSGNDRANLLARKAEA 297

[Close]

BLAST of HG10008790 vs. ExPASy TrEMBL
Match: A0A0A0LNT2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G000760 PE=4 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 6.3e-107
Identity = 221/292 (75.68%), Postives = 245/292 (83.90%), Query Frame = 0


Query: 229 MGCGNSKLNPEGELIPPRIRPLLLRSKFMELRKRKNGTNLRDGTLSKKVLLKDGES-EEN 288
           MGCGNSKLNP GEL+PPRIRPL +R+K +ELRKRKNGT+LRDG LSKKVLLKDGES EEN
Sbjct: 1   MGCGNSKLNPGGELVPPRIRPLHVRNKLLELRKRKNGTHLRDGALSKKVLLKDGESEEEN 60

Query: 289 SMLVDNR----KSMCCSHEGSTN-------EHDSASAIPLSNN---ATKDGEQSNHLLEE 348
           +M VDNR     + C + +  TN       EH+SAS IP SNN   ATK GEQSNH+LEE
Sbjct: 61  AMHVDNRHECGSTKCLASQQHTNNNNATKDEHNSASTIPPSNNNASATKTGEQSNHILEE 120

Query: 349 VPLTNVQLKTIHPDETPDLELKQDKTMDDHKCIQQGDD-NKKEGEEGRADNEENRG-FIC 408
            P  ++QLK  HPD+TP LELKQDKTM++HKCIQ+GD+ NKKEGE+GR DNEENRG FIC
Sbjct: 121 EPQPHIQLKATHPDDTPVLELKQDKTMNEHKCIQEGDENNKKEGEDGRPDNEENRGSFIC 180

Query: 409 PGSPSFRVYFVEETQDDKENVEMKDA-GMEDVSHKKSPSHDSVESSTSAKSVEGQENKVM 468
           PGSPSFR+YFVEETQDDKE VEMKDA GM DVSHKKSPS DSVES+TSAK  EGQENK +
Sbjct: 181 PGSPSFRLYFVEETQDDKEKVEMKDASGMGDVSHKKSPSRDSVESTTSAKCDEGQENKAI 240

Query: 469 KKGKKGTTFNRVISKKRPVGVGVKNLLNVKSCYHLSCSGNDRASLLARKAEA 503
           KKGKK TTFNRV+SKKRPV VGVKNLLNVKSCYHLSCSGNDRA+LLARKAEA
Sbjct: 241 KKGKKETTFNRVVSKKRPVSVGVKNLLNVKSCYHLSCSGNDRANLLARKAEA 292

[Close]

BLAST of HG10008790 vs. ExPASy TrEMBL
Match: A0A6J1E3W4 (uncharacterized protein LOC111429712 OS=Cucurbita moschata OX=3662 GN=LOC111429712 PE=4 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 1.5e-71
Identity = 173/290 (59.66%), Postives = 206/290 (71.03%), Query Frame = 0


Query: 229 MGCGNSKLNPEGELIPPRIRPLLLRSKFMELRKRKNGTNLRDGTLSKKVLLKDGE-SEEN 288
           MGCGNSKL PEGE I P IRPLL R+KF E RKRKNGT+LR+  LSKKVLLK+GE  EEN
Sbjct: 1   MGCGNSKLTPEGESILPMIRPLLFRTKFAEFRKRKNGTHLRETALSKKVLLKEGEIEEEN 60

Query: 289 SML-VDNRKSMCCSHEGST-----------NEHDSASAIPLSNNATKDGEQSNHLLEEVP 348
           S+L V NR S+  SH+G T           +EHDS +A              NHLLE+  
Sbjct: 61  SILPVHNRNSIYGSHDGKTICLHTKQENHMDEHDSPNA--------------NHLLEQHK 120

Query: 349 LTNVQLKTIHPDETPDLELKQDKTMDDHK-CIQQGDD-NKKEGEEGRADNEENRGFICPG 408
                      D    +ELK++KTM++ +  +++GDD NK+EGEEGR DNE+NR  ICPG
Sbjct: 121 PN---------DNGTRVELKENKTMNNQRTAVEEGDDENKEEGEEGRPDNEDNRCLICPG 180

Query: 409 SPSFRVYFVEETQDDKENVEMKDAG-MEDVSHKKSPSHDSVESSTSAKSVEGQENKVMKK 468
           SPSFRVYFVE+T +DK+NVEM D G MED S KKSPS DSVESS+S KS EGQENK +KK
Sbjct: 181 SPSFRVYFVEQTPNDKQNVEMNDDGDMEDASLKKSPSRDSVESSSSTKSNEGQENKTIKK 240

Query: 469 GKKGTTFNRVISKKRPVGVGVKNLLNVKS-CYHLSCSGNDRASLLARKAE 502
           GKKGTT NR  S++RPVGVG+K+LLNV + CYHLSC+GNDR + LARKAE
Sbjct: 241 GKKGTTLNRAGSRERPVGVGLKSLLNVNNCCYHLSCTGNDRVNHLARKAE 267

[Close]

BLAST of HG10008790 vs. ExPASy TrEMBL
Match: A0A6J1JK15 (uncharacterized protein LOC111485806 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111485806 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 3.7e-67
Identity = 166/282 (58.87%), Postives = 198/282 (70.21%), Query Frame = 0


Query: 229 MGCGNSKLNPEGELIPPRIRPLLLRSKFMELRKRKNGTNLRDGTLSKKVLLKDGE-SEEN 288
           MGCGNSKL PEGE I P IRPLL R+KF E RKRKNGT+LRD  LSKKVLL +GE  EEN
Sbjct: 1   MGCGNSKLTPEGESILPMIRPLLFRTKFAEFRKRKNGTHLRDTALSKKVLLTEGEIEEEN 60

Query: 289 SML-VDNRKSMCCSHEGSTNEHDSASAIPLSNNATKDGEQSNHLLE-EVPLTNVQLKTIH 348
           S+L V NR  +  SH+G T                   +Q NH  E + P  N  L+   
Sbjct: 61  SILAVHNRNCIYGSHDGKT--------------ICLHTKQENHKDEHDSPNANHPLEQHK 120

Query: 349 P-DETPDLELKQDKTMDD-HKCIQQGDDNKK-EGEEGRADNEENRGFICPGSPSFRVYFV 408
           P D    ++LK+DKTM++ HK +++GDD  K EGEEGR DNE+NR  ICPGSPSFRVYFV
Sbjct: 121 PNDNGTRVKLKEDKTMNNQHKAVEEGDDESKGEGEEGRPDNEDNRCLICPGSPSFRVYFV 180

Query: 409 EETQDDKENVEMKDAG-MEDVSHKKSPSHDSVESSTSAKSVEGQENKVMKKGKKGTTFNR 468
           E+T ++K+NVEM D G MED S KKSPS DSVES++S KS E QE K +KKGKKGTT NR
Sbjct: 181 EQTPNEKQNVEMNDDGDMEDASLKKSPSRDSVESTSSTKSNECQEKKTIKKGKKGTTLNR 240

Query: 469 VISKKRPVGVGVKNLLNVKS-CYHLSCSGNDRASLLARKAEA 503
             S+KRPVGVG+K+LLNV + CYHLSC+GNDR + L  KAE+
Sbjct: 241 AGSRKRPVGVGLKSLLNVNNCCYHLSCTGNDRGNHLPIKAES 268

[Close]

BLAST of HG10008790 vs. TAIR 10
Match: AT1G03360.1 (ribosomal RNA processing 4 )

HSP 1 Score: 159.5 bits (402), Expect = 7.2e-39
Identity = 88/192 (45.83%), Postives = 114/192 (59.38%), Query Frame = 0


Query: 1   LIQVAPKRWRLDIHYSQDAVLMLSSMNLPDGIQ--------------------------- 60
           +I+VA KRWR++++++QD VLMLSSMN+PDGIQ                           
Sbjct: 101 VIEVAQKRWRVELNFNQDGVLMLSSMNMPDGIQRRRTSVDELNMRNIFVEHDVVCAEVRN 160

Query: 61  ------------------LERGQLLTISPYLVKRRKQHFHHLEQYGIDIILGCNGFIWIG 120
                             LE+GQLL + PYLVKR K HFH++E  GID+I+GCNGFIW+G
Sbjct: 161 FQHDGSLQLQARSQKYGKLEKGQLLKVDPYLVKRSKHHFHYVESLGIDLIIGCNGFIWVG 220

Query: 121 EHVDPTEDMMIEDQVNKSEQKGSKFEGTFGNQMQERVYTPLETRQNICRTANAIRVLSIL 148
           EHV+  + M I+DQ ++ E   S   G      +E+ + PLETRQ ICR  NAIRVLS L
Sbjct: 221 EHVEVRDPMAIDDQKDE-EMISSSSTG------KEQSHIPLETRQTICRIGNAIRVLSNL 280

[Close]

BLAST of HG10008790 vs. TAIR 10
Match: AT5G50830.2 (unknown protein; Has 4750 Blast hits to 3160 proteins in 341 species: Archae - 14; Bacteria - 239; Metazoa - 1329; Fungi - 394; Plants - 197; Viruses - 79; Other Eukaryotes - 2498 (source: NCBI BLink). )

HSP 1 Score: 63.9 bits (154), Expect = 4.1e-10
Identity = 89/299 (29.77%), Postives = 137/299 (45.82%), Query Frame = 0


Query: 229 MGCGNSKLN-------PEGELI--PPRIRPLLLRSKFMELRKRKNGTNLRDG-TLSKKVL 288
           MGCG S+L         EG ++  P  IRP LLR +  E++KR +   L+   TLSKK L
Sbjct: 1   MGCGGSRLGGVATTRAEEGGVVPLPAGIRP-LLRRRLEEMKKRSHAGVLKGSQTLSKKEL 60

Query: 289 LKDGESEENSMLVDNRKSMCCSHE-GSTNEHDSASAIPLSNNATKDGEQSNHLLEEVPLT 348
           L+   SE+     +N  S+  S +     +H+      +        +    + EEV + 
Sbjct: 61  LRHNSSEDGEDTEENDGSLKASAKVAPAPDHNVEEKKEVIYEKIPSKDDVKEVKEEVVVN 120

Query: 349 NVQLKTIHPD-------ETPDLELKQDKTMDDHKCI-----QQGDDNKK-EGEEGRADNE 408
             +    H D       E  ++  KQ++   D   +     ++GDD K  + +EG  +N 
Sbjct: 121 KQEEDNHHQDVVEKQEEENKEVVKKQEEENHDDDVVVINVKKEGDDGKNHDVDEGSINNF 180

Query: 409 ENRGFICPGSPSFRVYFVE-ETQDDKENVEMKDAGMEDVSHKKSPSHDSVESSTSAKSVE 468
           + R  I PGSPSFRVY V+  + DD E  +++DA       +KS   +SV  +T  K V+
Sbjct: 181 DER-MIGPGSPSFRVYCVDVPSDDDDEEKDVEDA-------RKSMETESV--TTEIKEVD 240

Query: 469 GQENKVMKKGKKGTTFNRVISKKRPVGVGVKNLLNVKS-CY-HLSCSGNDRASLLARKA 501
           G   K  KK ++G  F   + +        K L NV + CY    C GN  + L+  K+
Sbjct: 241 GSIVKKEKKERRGKRFGIALPR--------KYLANVTAPCYAGGGCMGNTHSRLVQEKS 280

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BLAST of HG10008790 vs. TAIR 10
Match: AT5G50830.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; Has 4984 Blast hits to 3288 proteins in 342 species: Archae - 12; Bacteria - 257; Metazoa - 1366; Fungi - 452; Plants - 199; Viruses - 77; Other Eukaryotes - 2621 (source: NCBI BLink). )

HSP 1 Score: 58.5 bits (140), Expect = 1.7e-08
Identity = 87/299 (29.10%), Postives = 135/299 (45.15%), Query Frame = 0


Query: 229 MGCGNSKLN-------PEGELI--PPRIRPLLLRSKFMELRKRKNGTNLRDG-TLSKKVL 288
           MGCG S+L         EG ++  P  IRP LLR +  E++KR +   L+   TLSKK L
Sbjct: 1   MGCGGSRLGGVATTRAEEGGVVPLPAGIRP-LLRRRLEEMKKRSHAGVLKGSQTLSKKEL 60

Query: 289 LKDGESEENSMLVDNRKSMCCSHE-GSTNEHDSASAIPLSNNATKDGEQSNHLLEEVPLT 348
           L+   SE+     +N  S+  S +     +H+      +        +    + EEV + 
Sbjct: 61  LRHNSSEDGEDTEENDGSLKASAKVAPAPDHNVEEKKEVIYEKIPSKDDVKEVKEEVVVN 120

Query: 349 NVQLKTIHPD-------ETPDLELKQDKTMDDHKCI-----QQGDDNKK-EGEEGRADNE 408
             +    H D       E  ++  KQ++   D   +     ++GDD K  + +EG  +N 
Sbjct: 121 KQEEDNHHQDVVEKQEEENKEVVKKQEEENHDDDVVVINVKKEGDDGKNHDVDEGSINNF 180

Query: 409 ENRGFICPGSPSFRVYFVE-ETQDDKENVEMKDAGMEDVSHKKSPSHDSVESSTSAKSVE 468
           + R  I PGSPSFRVY V+  + DD E  +++DA       +KS   +SV   T+    +
Sbjct: 181 DER-MIGPGSPSFRVYCVDVPSDDDDEEKDVEDA-------RKSMETESV---TTEIKED 240

Query: 469 GQENKVMKKGKKGTTFNRVISKKRPVGVGVKNLLNVKS-CY-HLSCSGNDRASLLARKA 501
           G   K  KK ++G  F   + +        K L NV + CY    C GN  + L+  K+
Sbjct: 241 GSIVKKEKKERRGKRFGIALPR--------KYLANVTAPCYAGGGCMGNTHSRLVQEKS 279

The following BLAST results are available for this feature:

BLAST of HG10008790 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464387.1	5.6e-110	77.32	PREDICTED: uncharacterized protein LOC103502290 [Cucumis melo]	[more]
KAA0057746.1	5.6e-110	77.32	ABC transporter F family member 4-like [Cucumis melo var. makuwa] >TYJ98429.1 AB...	[more]
XP_011649820.1	1.3e-106	75.68	probable DNA-directed RNA polymerase I subunit RPA43 isoform X1 [Cucumis sativus...	[more]
KAE8652373.1	9.1e-76	61.72	hypothetical protein Csa_013810 [Cucumis sativus]	[more]
XP_022921428.1	3.0e-71	59.66	uncharacterized protein LOC111429712 [Cucurbita moschata]	[more]

BLAST of HG10008790 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZVT7	1.0e-37	45.83	Exosome complex component RRP4 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP4 P...	[more]
Q09704	1.8e-10	29.76	Exosome complex component rrp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2...	[more]
Q2KID0	1.4e-07	31.25	Exosome complex component RRP4 OS=Bos taurus OX=9913 GN=EXOSC2 PE=2 SV=1	[more]
Q8VBV3	1.9e-07	33.07	Exosome complex component RRP4 OS=Mus musculus OX=10090 GN=Exosc2 PE=1 SV=1	[more]
Q13868	2.4e-07	32.77	Exosome complex component RRP4 OS=Homo sapiens OX=9606 GN=EXOSC2 PE=1 SV=2	[more]

BLAST of HG10008790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BHA4	2.7e-110	77.32	ABC transporter F family member 4-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S3CLT6	2.7e-110	77.32	uncharacterized protein LOC103502290 OS=Cucumis melo OX=3656 GN=LOC103502290 PE=...	[more]
A0A0A0LNT2	6.3e-107	75.68	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G000760 PE=4 SV=1	[more]
A0A6J1E3W4	1.5e-71	59.66	uncharacterized protein LOC111429712 OS=Cucurbita moschata OX=3662 GN=LOC1114297...	[more]
A0A6J1JK15	3.7e-67	58.87	uncharacterized protein LOC111485806 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of HG10008790 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G03360.1	7.2e-39	45.83	ribosomal RNA processing 4	[more]
AT5G50830.2	4.1e-10	29.77	unknown protein; Has 4750 Blast hits to 3160 proteins in 341 species: Archae - 1...	[more]
AT5G50830.1	1.7e-08	29.10	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004088	K Homology domain, type 1	PFAM	PF15985	KH_6	coord: 37..77 e-value: 1.1E-12 score: 48.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 342..390
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 298..325
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 417..458
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 346..385
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 417..431
None	No IPR available	PANTHER	PTHR21321:SF4	EXOSOME COMPLEX COMPONENT RRP4	coord: 34..150 coord: 2..35
IPR026699	Exosome complex RNA-binding protein 1/RRP40/RRP4	PANTHER	PTHR21321	PNAS-3 RELATED	coord: 2..35
IPR026699	Exosome complex RNA-binding protein 1/RRP40/RRP4	PANTHER	PTHR21321	PNAS-3 RELATED	coord: 34..150
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 37..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10008790.1	HG10008790.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0000178	exosome (RNase complex)
molecular_function	GO:0003723	RNA binding