HG10008727 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10008727
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	28 kDa ribonucleoprotein, chloroplastic-like
Location	Chr10: 25597648 .. 25599437 (+)
RNA-Seq Expression	HG10008727
Synteny	HG10008727

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTACTTCAGCCACTTCCATTTTGAAGCCCTTATCCAAGCCAGATTCTTGCTTTCTCTCTTTGCCTTCTCTATTCACCGGCAGACCCCCACACACTTTCCTCTCTTTCCCTTCAAAATTCATCCCCTTCAATCTCTCCTCTTCTCATTCTTTACTCTTTTCCCCCTCTAAGAAGAAACCCCATCTTCCTTCTGTAGCTCAGACTTCCGACTGGGCTCAAGAAGACGATACCATCACCATTGACCCAAAACTCGGCGACAATGAAGAAGCCGAGGACGGCCCTCATTGGGAAAATCAAGAGCTCAGTGAAACTGAGTCTCGTATTTCTGATTGGGAAGGTGAAGGCGAAGGTGAAGATGATGGAGGAAGTGAGGCCGAAGGAGAGGAGGAAGAAGGTCCTTATGAAGAGCCAAATGAAGACGCTAAATTGTTTGTTGGGAATTTGCCCTATGATGTTGATAGTCAAAAGCTAGCAATGCTCTTTGAGAAGACTGGAACTGTGGAGATTGCTGAGGTGAGCTTGCTTTAAGACTTTGCTAAATTTACATTGTTGTGTGTTTTTTGGTTATGGATTTGGTTTAAGCTTTTAATCTGCTTGTGATTGTGAGGACTGTAGGTTATTTACAACAGAGAAACAGATCAGAGTCGTGGTTTTGGCTTTGTGACAATGAGTACTGTTGAAGAAGCTGAGAAAGCTGTGGATACCTTCAACCGTTATGTAAGCTTTTGATGTTCAAGCTTAATTAACTCTCTCTTGTAGACATGATTCAGCCATATTTGAGTATCATGAATGAAACCTTATCTTCATTCTTACTTTTCAGTGGAAGCATTTACCACCATACTTATCTCTGCATTTAACCATTTCATTTTATTCTGAAGAGTTTAAATGATCTGTTTTTCATGAATCTGAGGGTTTGTTTATTAGACTAGGAGTTAGCCGTTAGCACCAACTTCTGACTACTGATGAGTTTGATGAATTGAATTGTAGCACCTTCTGTAGTGATTTGTTTGTTTGAATGTTTGATCTAAGGTTCCCCTAGAGGCCATGTCCTTGTGTAAACTTCTTGTCTGGGCTGTTATTAGAGTACCTCAAACATATGTAGTTGTTTTCTTTGATTGAGATGCCTCTTGACTTTTGCTTGGTACTTGTTAGAACTTTTCTAGCATCGTTTCCATTGTCAGTTCTACAGAGAAAATTCTGGGAATAAAATGTATTTTCTGGGTTTATAGGAGCTATCAGGGAGGCTGTTGACTGTTAATAAGGCTGCCCCAAGAGGTTCAAGGCCAGAACGCCAACCTCGAACATTCCAACCCGCTTTCAGAATCTATGTGGGCAATCTTCCATGGGATGTAGACAATGCACGCCTGGAGCAGGTCTTTAGTGAACATGGTAAAGTAGTAGAGGCCCGTGTTCTTTACGACCGGGACAGTGGCCGTTCTCGTGGCTTTGGCTTTGTGACCATGGCTGACGAAACTGGAATGAATGATGCCATTGCTGCTCTGGATGGACAGGTATGAAAATGAGAGTTTCTTTAACAACCCTCATTGTTGTAGACTCCGAACTCGATAACACTGAACACAAATGATGAAGTTTTTCATTTCATGTCTCCATATAAAAATAAAAAAATAAAAAATAAAAAAATAAAAAAAGTTTTTGAGATGGAAATAATAACTGAATCTTGTCAACTTCTAATAAAACATCCTGAAATTTGAAATGTGCAGAGTCTAGAAGGAAGGGCAATCAGAGTAAATGTTGCAGAGGAAAAACCAAGGCGCAACTTCTGA

mRNA sequence

ATGGCTTCTACTTCAGCCACTTCCATTTTGAAGCCCTTATCCAAGCCAGATTCTTGCTTTCTCTCTTTGCCTTCTCTATTCACCGGCAGACCCCCACACACTTTCCTCTCTTTCCCTTCAAAATTCATCCCCTTCAATCTCTCCTCTTCTCATTCTTTACTCTTTTCCCCCTCTAAGAAGAAACCCCATCTTCCTTCTGTAGCTCAGACTTCCGACTGGGCTCAAGAAGACGATACCATCACCATTGACCCAAAACTCGGCGACAATGAAGAAGCCGAGGACGGCCCTCATTGGGAAAATCAAGAGCTCAGTGAAACTGAGTCTCGTATTTCTGATTGGGAAGGTGAAGGCGAAGGTGAAGATGATGGAGGAAGTGAGGCCGAAGGAGAGGAGGAAGAAGGTCCTTATGAAGAGCCAAATGAAGACGCTAAATTGTTTGTTGGGAATTTGCCCTATGATGTTGATAGTCAAAAGCTAGCAATGCTCTTTGAGAAGACTGGAACTGTGGAGATTGCTGAGGTTATTTACAACAGAGAAACAGATCAGAGTCGTGGTTTTGGCTTTGTGACAATGAGTACTGTTGAAGAAGCTGAGAAAGCTGTGGATACCTTCAACCGTTATGAGCTATCAGGGAGGCTGTTGACTGTTAATAAGGCTGCCCCAAGAGGTTCAAGGCCAGAACGCCAACCTCGAACATTCCAACCCGCTTTCAGAATCTATGTGGGCAATCTTCCATGGGATGTAGACAATGCACGCCTGGAGCAGGTCTTTAGTGAACATGGTAAAGTAGTAGAGGCCCGTGTTCTTTACGACCGGGACAGTGGCCGTTCTCGTGGCTTTGGCTTTGTGACCATGGCTGACGAAACTGGAATGAATGATGCCATTGCTGCTCTGGATGGACAGAGTCTAGAAGGAAGGGCAATCAGAGTAAATGTTGCAGAGGAAAAACCAAGGCGCAACTTCTGA

Coding sequence (CDS)

ATGGCTTCTACTTCAGCCACTTCCATTTTGAAGCCCTTATCCAAGCCAGATTCTTGCTTTCTCTCTTTGCCTTCTCTATTCACCGGCAGACCCCCACACACTTTCCTCTCTTTCCCTTCAAAATTCATCCCCTTCAATCTCTCCTCTTCTCATTCTTTACTCTTTTCCCCCTCTAAGAAGAAACCCCATCTTCCTTCTGTAGCTCAGACTTCCGACTGGGCTCAAGAAGACGATACCATCACCATTGACCCAAAACTCGGCGACAATGAAGAAGCCGAGGACGGCCCTCATTGGGAAAATCAAGAGCTCAGTGAAACTGAGTCTCGTATTTCTGATTGGGAAGGTGAAGGCGAAGGTGAAGATGATGGAGGAAGTGAGGCCGAAGGAGAGGAGGAAGAAGGTCCTTATGAAGAGCCAAATGAAGACGCTAAATTGTTTGTTGGGAATTTGCCCTATGATGTTGATAGTCAAAAGCTAGCAATGCTCTTTGAGAAGACTGGAACTGTGGAGATTGCTGAGGTTATTTACAACAGAGAAACAGATCAGAGTCGTGGTTTTGGCTTTGTGACAATGAGTACTGTTGAAGAAGCTGAGAAAGCTGTGGATACCTTCAACCGTTATGAGCTATCAGGGAGGCTGTTGACTGTTAATAAGGCTGCCCCAAGAGGTTCAAGGCCAGAACGCCAACCTCGAACATTCCAACCCGCTTTCAGAATCTATGTGGGCAATCTTCCATGGGATGTAGACAATGCACGCCTGGAGCAGGTCTTTAGTGAACATGGTAAAGTAGTAGAGGCCCGTGTTCTTTACGACCGGGACAGTGGCCGTTCTCGTGGCTTTGGCTTTGTGACCATGGCTGACGAAACTGGAATGAATGATGCCATTGCTGCTCTGGATGGACAGAGTCTAGAAGGAAGGGCAATCAGAGTAAATGTTGCAGAGGAAAAACCAAGGCGCAACTTCTGA

Protein sequence

MASTSATSILKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFNLSSSHSLLFSPSKKKPHLPSVAQTSDWAQEDDTITIDPKLGDNEEAEDGPHWENQELSETESRISDWEGEGEGEDDGGSEAEGEEEEGPYEEPNEDAKLFVGNLPYDVDSQKLAMLFEKTGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAEKAVDTFNRYELSGRLLTVNKAAPRGSRPERQPRTFQPAFRIYVGNLPWDVDNARLEQVFSEHGKVVEARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQSLEGRAIRVNVAEEKPRRNF

Homology

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BLAST of HG10008727 vs. NCBI nr
Match: XP_038878997.1 (28 kDa ribonucleoprotein, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 608.6 bits (1568), Expect = 3.1e-170
Identity = 310/321 (96.57%), Postives = 315/321 (98.13%), Query Frame = 0


Query: 1   MASTSATSILKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFNLSSSHSLLFSPSKK 60
           MASTSATSILKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFNLSSSH+ LFS SKK
Sbjct: 1   MASTSATSILKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFNLSSSHTSLFSSSKK 60

Query: 61  KPHLPSVAQTSDWAQEDDTITIDPKLGDNEEAEDGPHWENQELSETESRISDWEGEGEGE 120
           K HLPSVAQTSDWAQEDDTITIDPKLGD+E AE+GPHWENQELSETESRISDWEGE EGE
Sbjct: 61  KTHLPSVAQTSDWAQEDDTITIDPKLGDDEAAEEGPHWENQELSETESRISDWEGEAEGE 120

Query: 121 DDGGSEAEGEEEEGPYEEPNEDAKLFVGNLPYDVDSQKLAMLFEKTGTVEIAEVIYNRET 180
           DDGGSEAEG+EEEGPYEEPNEDAKLFVGNLPYDVDSQKLAMLFEK GTVEIAEVIYNRET
Sbjct: 121 DDGGSEAEGDEEEGPYEEPNEDAKLFVGNLPYDVDSQKLAMLFEKAGTVEIAEVIYNRET 180

Query: 181 DQSRGFGFVTMSTVEEAEKAVDTFNRYELSGRLLTVNKAAPRGSRPERQPRTFQPAFRIY 240
           DQSRGFGFVTMSTVEEAEKAVDTFNRYELSGRLLTVNKAAPRGSRPERQPRTFQPAFRIY
Sbjct: 181 DQSRGFGFVTMSTVEEAEKAVDTFNRYELSGRLLTVNKAAPRGSRPERQPRTFQPAFRIY 240

Query: 241 VGNLPWDVDNARLEQVFSEHGKVVEARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDG 300
           VGNLPWDVDNARLEQVFSEHGKVVEARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDG
Sbjct: 241 VGNLPWDVDNARLEQVFSEHGKVVEARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDG 300

Query: 301 QSLEGRAIRVNVAEEKPRRNF 322
           QSLEGRAIRVNVAEE+PRRNF
Sbjct: 301 QSLEGRAIRVNVAEERPRRNF 321

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BLAST of HG10008727 vs. NCBI nr
Match: KAA0057807.1 (Ribonucleoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 562.8 bits (1449), Expect = 1.9e-156
Identity = 296/332 (89.16%), Postives = 311/332 (93.67%), Query Frame = 0


Query: 1   MASTSATSILKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFNL--SSSHSLLFSPS 60
           MASTSATS+ K LSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPF+L  SSSHS  F PS
Sbjct: 1   MASTSATSLFKTLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSHSSCFYPS 60

Query: 61  KKKPHLPSVAQTSDWAQEDDTITIDPKLGDNEEAED--GPHWENQELSETESRISDWEGE 120
           KKKPHLPSVAQTSDWAQEDDT+TIDPKL ++E+AE+  GPHWEN+ELSETESRISDWEGE
Sbjct: 61  KKKPHLPSVAQTSDWAQEDDTMTIDPKLDNDEDAEEEGGPHWENEELSETESRISDWEGE 120

Query: 121 GEGEDDGGSEAE--GEEEE-----GPYEEPNEDAKLFVGNLPYDVDSQKLAMLFEKTGTV 180
           GEGE DGGSEAE  G+EEE     GPYEEPNEDAKLFVGNLPYD+DS+KLAMLFEK GTV
Sbjct: 121 GEGE-DGGSEAEVGGDEEEEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTV 180

Query: 181 EIAEVIYNRETDQSRGFGFVTMSTVEEAEKAVDTFNRYELSGRLLTVNKAAPRGSRPERQ 240
           EIAEVIYNRETD+SRGFGFVTMSTVEEAEKAVDTFNRYELSGRLLTVNKAAPRG+R ERQ
Sbjct: 181 EIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYELSGRLLTVNKAAPRGTRQERQ 240

Query: 241 PRTFQPAFRIYVGNLPWDVDNARLEQVFSEHGKVVEARVLYDRDSGRSRGFGFVTMADET 300
           PR FQPAFRIYVGNLPWDVDNARLEQVFSEHGKVV+ARVLYDRDSGRSRGFGFVTMADET
Sbjct: 241 PRPFQPAFRIYVGNLPWDVDNARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMADET 300

Query: 301 GMNDAIAALDGQSLEGRAIRVNVAEEKPRRNF 322
           GMNDAIAALDGQSLEGRAIRVNVAEE+PRRNF
Sbjct: 301 GMNDAIAALDGQSLEGRAIRVNVAEERPRRNF 331

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BLAST of HG10008727 vs. NCBI nr
Match: TYJ98491.1 (28 kDa ribonucleoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 561.2 bits (1445), Expect = 5.7e-156
Identity = 295/333 (88.59%), Postives = 310/333 (93.09%), Query Frame = 0


Query: 1   MASTSATSILKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFNL--SSSHSLLFSPS 60
           MASTSATS+ KPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPF+L  SSSHS  F PS
Sbjct: 1   MASTSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSHSSCFYPS 60

Query: 61  KKKPHLPSVAQTSDWAQEDDTITIDPKLGDNEEAED--GPHWENQELSETESRISDWEGE 120
           KKKPHLPSVAQTSDWAQEDDT+TIDPKL ++E+AE+  GPHWEN+ELSETESRISDWEGE
Sbjct: 61  KKKPHLPSVAQTSDWAQEDDTMTIDPKLDNDEDAEEEGGPHWENEELSETESRISDWEGE 120

Query: 121 GEGEDDGGSEAE--GEEEE------GPYEEPNEDAKLFVGNLPYDVDSQKLAMLFEKTGT 180
           GE   DGGSEAE  G+EEE      GPYEEPNEDAKLFVGNLPYD+DS+KLAMLFEK GT
Sbjct: 121 GE---DGGSEAEVGGDEEEEEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGT 180

Query: 181 VEIAEVIYNRETDQSRGFGFVTMSTVEEAEKAVDTFNRYELSGRLLTVNKAAPRGSRPER 240
           VEIAEVIYNRETD+SRGFGFVTMSTVEEAEKAVDTFNRYELSGRLLTVNKAAPRG+R ER
Sbjct: 181 VEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYELSGRLLTVNKAAPRGTRQER 240

Query: 241 QPRTFQPAFRIYVGNLPWDVDNARLEQVFSEHGKVVEARVLYDRDSGRSRGFGFVTMADE 300
           QPR FQPAFRIYVGNLPWDVDNARLEQVFSEHGKVV+ARVLYDRDSGRSRGFGFVTMADE
Sbjct: 241 QPRPFQPAFRIYVGNLPWDVDNARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMADE 300

Query: 301 TGMNDAIAALDGQSLEGRAIRVNVAEEKPRRNF 322
           TGMNDAIAALDGQSLEGRAIRVNVAEE+PRRNF
Sbjct: 301 TGMNDAIAALDGQSLEGRAIRVNVAEERPRRNF 330

[Close]

BLAST of HG10008727 vs. NCBI nr
Match: XP_004138078.1 (28 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >KAE8652388.1 hypothetical protein Csa_013384 [Cucumis sativus])

HSP 1 Score: 549.7 bits (1415), Expect = 1.7e-152
Identity = 289/333 (86.79%), Postives = 306/333 (91.89%), Query Frame = 0


Query: 1   MASTSATSILKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFNL--SSSHSLLFSPS 60
           MAS+SATS+ KPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPF+L  SSS+S  FSPS
Sbjct: 1   MASSSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSYSSGFSPS 60

Query: 61  KKKPHLPSVAQTSDWAQEDDTITIDPKLGDNEEA--EDGPHWENQELSETESRISDWEGE 120
           KKKPHLPSVAQTSDWAQEDDTITIDPKL ++E    E GPHWEN+ELSETESRISDWEGE
Sbjct: 61  KKKPHLPSVAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWENEELSETESRISDWEGE 120

Query: 121 GEGEDDGGSEAE--GEEEE------GPYEEPNEDAKLFVGNLPYDVDSQKLAMLFEKTGT 180
           GE   DGGSEAE  G+EEE      GPYEEPNEDAKLFVGNLPYD+DS+KLAMLFEK GT
Sbjct: 121 GE---DGGSEAEVGGDEEEDEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGT 180

Query: 181 VEIAEVIYNRETDQSRGFGFVTMSTVEEAEKAVDTFNRYELSGRLLTVNKAAPRGSRPER 240
           VEIAEVIYNRETD+SRGFGFVTMSTVEEAEKAVDTFNRY+LSGRLLTVNKAAPRGSR ER
Sbjct: 181 VEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQER 240

Query: 241 QPRTFQPAFRIYVGNLPWDVDNARLEQVFSEHGKVVEARVLYDRDSGRSRGFGFVTMADE 300
           +PR FQP FRIYVGNLPWDVDN RLEQ+FSEHGKVV+ARVLYDRDSGRSRGFGFVTMADE
Sbjct: 241 EPRPFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADE 300

Query: 301 TGMNDAIAALDGQSLEGRAIRVNVAEEKPRRNF 322
           TGMNDAIAALDGQSL+GRAIRVNVAEE+PRRNF
Sbjct: 301 TGMNDAIAALDGQSLDGRAIRVNVAEERPRRNF 330

[Close]

BLAST of HG10008727 vs. NCBI nr
Match: XP_022134798.1 (28 kDa ribonucleoprotein, chloroplastic-like [Momordica charantia])

HSP 1 Score: 532.3 bits (1370), Expect = 2.8e-147
Identity = 289/339 (85.25%), Postives = 299/339 (88.20%), Query Frame = 0


Query: 1   MASTSATSILKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFNL-SSSHSLLFSPSK 60
           MASTSATSILKPLSK DSC LSLPS+FT RPPH+FLSFPSK I F+L SSSHS  FS SK
Sbjct: 1   MASTSATSILKPLSKADSCLLSLPSVFTCRPPHSFLSFPSKLIRFHLSSSSHSSPFSLSK 60

Query: 61  KKPHLPS----VAQTSDWAQEDDTITIDPKLGDNEEAED--GPHWENQELSETESRISDW 120
           KKPH  S    VAQTSDWAQEDDTITIDPKLG +EE ED  GPHWENQELSETESRISDW
Sbjct: 61  KKPHPSSLVSFVAQTSDWAQEDDTITIDPKLGGDEEEEDEQGPHWENQELSETESRISDW 120

Query: 121 EGEGEGEDDGGSEAEG-----------EEEEGPYEEPNEDAKLFVGNLPYDVDSQKLAML 180
           EGE E   DGGSEAEG           EEEEG YEEPNEDAKLFVGNLPYDVDSQKLAM+
Sbjct: 121 EGEAE---DGGSEAEGEDGEGGLLEEEEEEEGSYEEPNEDAKLFVGNLPYDVDSQKLAMI 180

Query: 181 FEKTGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAEKAVDTFNRYELSGRLLTVNKAAPR 240
           F K GTVEIAEVIYNRETDQSRGFGFVTMSTVEEAEKAVDTFNRYEL GRLLTVNKAAPR
Sbjct: 181 FGKAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAEKAVDTFNRYELEGRLLTVNKAAPR 240

Query: 241 GSRPERQPRTFQPAFRIYVGNLPWDVDNARLEQVFSEHGKVVEARVLYDRDSGRSRGFGF 300
           G+RPER PRTFQ +FRIYVGNLPWDVDNARLEQVFSEHGKVVEARVLYDRD+GRSRGFGF
Sbjct: 241 GARPERTPRTFQSSFRIYVGNLPWDVDNARLEQVFSEHGKVVEARVLYDRDTGRSRGFGF 300

Query: 301 VTMADETGMNDAIAALDGQSLEGRAIRVNVAEEKPRRNF 322
           VTMADETGMNDAIAALDGQSL+GRAIRVNVAEE+PRRNF
Sbjct: 301 VTMADETGMNDAIAALDGQSLDGRAIRVNVAEERPRRNF 336

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BLAST of HG10008727 vs. ExPASy Swiss-Prot
Match: Q04836 (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31A PE=1 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 4.0e-88
Identity = 196/344 (56.98%), Postives = 239/344 (69.48%), Query Frame = 0


Query: 1   MASTSATSILKPLSKPDSCFLSL-------------------PSLFTGRPPHTFLSFPSK 60
           MAS+  TS LKPL+  DS   ++                    SL TGR     ++ P  
Sbjct: 1   MASSIVTSSLKPLAMADSSSSTIFSHPSISSTISSSRIRSSSVSLLTGR-----INLPLS 60

Query: 61  FIPFNLSSSHSLLFSPSKKKPHLPSVAQTSDWAQEDDTITIDPKLGDNEEAEDGPHWENQ 120
           F   +LS       +  KK P +  VAQTSDWA+E    ++       EE E+    E+Q
Sbjct: 61  FSRVSLSLKTK---THLKKSPFVSFVAQTSDWAEEGGEGSVAV-----EETENS--LESQ 120

Query: 121 ELSETESRISDWEGEGEGEDDGGSEAEGEEEEG------PYEEPNEDAKLFVGNLPYDVD 180
           ++SE +    D     EG+   G E+EG+  EG       + EP+E+AKLFVGNL YDV+
Sbjct: 121 DVSEGDESEGD---ASEGDVSEGDESEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVN 180

Query: 181 SQKLAMLFEKTGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAEKAVDTFNRYELSGRLLT 240
           SQ LAMLFE+ GTVEIAEVIYNRETDQSRGFGFVTMS+V+EAE AV+ FNRY+L+GRLLT
Sbjct: 181 SQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLT 240

Query: 241 VNKAAPRGSRPERQPRTFQPAFRIYVGNLPWDVDNARLEQVFSEHGKVVEARVLYDRDSG 300
           VNKAAPRGSRPER PR ++PAFR+YVGNLPWDVDN RLEQ+FSEHGKVVEARV+YDR++G
Sbjct: 241 VNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETG 300

Query: 301 RSRGFGFVTMADETGMNDAIAALDGQSLEGRAIRVNVAEEKPRR 320
           RSRGFGFVTM+D   +N+AI+ALDGQ+LEGRAIRVNVAEE+P R
Sbjct: 301 RSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPR 326

[Close]

BLAST of HG10008727 vs. ExPASy Swiss-Prot
Match: P19682 (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 2.7e-84
Identity = 175/307 (57.00%), Postives = 218/307 (71.01%), Query Frame = 0


Query: 17  DSCFLSLPSLFT---GRPPHTFLSFPSKFIPFNLSSSHSLLFSPSKKKPHLPSVAQTSDW 76
           + C +SLP  FT       + FLS   K  P +LSSS   L S +K+    P+    S  
Sbjct: 4   NGCLISLPPFFTTTKSISSYPFLSTQLK--PISLSSSLPTLLSLNKRTTQFPTF--VSVL 63

Query: 77  AQEDDTITIDPKLGDNEEAEDGPHWENQELSETESRISDWEGEGEGEDDGGSEAEGEEEE 136
           +++D+T+ +D    D E+  D P +  +                           GE EE
Sbjct: 64  SEDDNTLVLD----DQEQGGDFPSFVGE--------------------------AGETEE 123

Query: 137 GPYEEPNEDAKLFVGNLPYDVDSQKLAMLFEKTGTVEIAEVIYNRETDQSRGFGFVTMST 196
             Y+EP+EDAKLFVGNLPYD+DS+ LA LF++ G VEIAEVIYNRETD+SRGFGFVTMST
Sbjct: 124 --YQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMST 183

Query: 197 VEEAEKAVDTFNRYELSGRLLTVNKAAPRGSRPERQPRTFQPAFRIYVGNLPWDVDNARL 256
           VEEA+KAV+ +++Y+L+GRLLTVNKAAPRGSRPER PRTFQP +RIYVGN+PWD+D+ARL
Sbjct: 184 VEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPTYRIYVGNIPWDIDDARL 243

Query: 257 EQVFSEHGKVVEARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQSLEGRAIRVNVA 316
           EQVFSEHGKVV ARV++DR+SGRSRGFGFVTM+ E  M++AIA LDGQ+L+GR IRVN A
Sbjct: 244 EQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAA 274

Query: 317 EEKPRRN 321
           EE+PRRN
Sbjct: 304 EERPRRN 274

[Close]

BLAST of HG10008727 vs. ExPASy Swiss-Prot
Match: P19683 (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 2.5e-82
Identity = 181/327 (55.35%), Postives = 229/327 (70.03%), Query Frame = 0


Query: 3   STSATSILKPLS-KPDSCFLSLPSLFTGRPPHTFLSFP------SKFIPFNLSSSHS-LL 62
           S +   I+KP S   +SC +SLP LF         ++P            +LS ++S  +
Sbjct: 2   SCATKPIIKPSSMATNSCLISLPPLFATTTKSKSFAYPYLSNTLKPIKLLHLSCTYSPCI 61

Query: 63  FSPSKKKPHLPSVAQTSDWAQEDDTITIDPKLGDNEEAEDGPHWE-NQELSETESRISDW 122
            SP KK          S   +E++T+ +D   G  +E+ D  ++E + E +E E  +   
Sbjct: 62  LSPKKK-------TSVSALQEEENTLILD---GQGQESGDLFNFEPSGEETEEEGFV--- 121

Query: 123 EGEGEGEDDGGSEAEGEEEEGPYEEPNEDAKLFVGNLPYDVDSQKLAMLFEKTGTVEIAE 182
             E  G+     E E +EEE  ++EP EDAKLFVGNLPYDVDS+ LA LFE+ G VEIAE
Sbjct: 122 --EAVGDAGESDEVEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAE 181

Query: 183 VIYNRETDQSRGFGFVTMSTVEEAEKAVDTFNRYELSGRLLTVNKAAPRGSRPERQPRTF 242
           VIYNR+TDQSRGFGFVTMSTVEEAEKAV+ +NRY+++GRLLTVNKAA RG RPER PRTF
Sbjct: 182 VIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPRTF 241

Query: 243 QPAFRIYVGNLPWDVDNARLEQVFSEHGKVVEARVLYDRDSGRSRGFGFVTMADETGMND 302
           + ++RIYVGN+PW +D+ARLEQ+FSEHGKVV ARV+YDR++GRSRGFGFVTMA E  M+D
Sbjct: 242 EQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSD 301

Query: 303 AIAALDGQSLEGRAIRVNVAEEKPRRN 321
           AIA LDGQSL+GR IRVNVAE++ RRN
Sbjct: 302 AIANLDGQSLDGRTIRVNVAEDRSRRN 313

[Close]

BLAST of HG10008727 vs. ExPASy Swiss-Prot
Match: Q9FGS0 (RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31B PE=1 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 2.9e-78
Identity = 175/319 (54.86%), Postives = 215/319 (67.40%), Query Frame = 0


Query: 4   TSATSILKPLSKPDSCFLSLPSLF--TGRPPHTF-LSFPSKFIPFNLSSSHSLLFSPSKK 63
           T +  +L   +   S    +PS+F  +    H F  S  S+ +   LS     L + S  
Sbjct: 7   TPSLKLLAMTNSSSSTLFCIPSIFNISSSESHRFNFSLSSRPVNLTLSLKSKTLRNSS-- 66

Query: 64  KPHLPSVAQTSDWAQEDDTITIDPKLGDNEEAEDGPHWENQELSETESRISDWEGEGEGE 123
            P +  V+QTS+WA+E             EE EDG       +  T   + +     E E
Sbjct: 67  -PVVTFVSQTSNWAEE-------------EEGEDG------SIGGTSVTVDE---SFESE 126

Query: 124 DDGGSEAEGEEEEGPYEEPNEDAKLFVGNLPYDVDSQKLAMLFEKTGTVEIAEVIYNRET 183
           D  G           + EP E+AKLFVGNLPYDVDSQ LAMLFE+ GTVEI+EVIYNR+T
Sbjct: 127 DGVG-----------FPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDT 186

Query: 184 DQSRGFGFVTMSTVEEAEKAVDTFNRYELSGRLLTVNKAAPRGSRPERQPRTFQPAFRIY 243
           DQSRGFGFVTMSTVEEAEKAV+ FN +E++GR LTVN+AAPRGSRPERQPR +  AFRIY
Sbjct: 187 DQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIY 246

Query: 244 VGNLPWDVDNARLEQVFSEHGKVVEARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDG 303
           VGNLPWDVD+ RLE++FSEHGKVV+ARV+ DR++GRSRGFGFV M++E  +N AIAALDG
Sbjct: 247 VGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDG 289

Query: 304 QSLEGRAIRVNVAEEKPRR 320
           Q+LEGRAI+VNVAEE+ RR
Sbjct: 307 QNLEGRAIKVNVAEERTRR 289

[Close]

BLAST of HG10008727 vs. ExPASy Swiss-Prot
Match: P28644 (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 1.2e-76
Identity = 162/256 (63.28%), Postives = 192/256 (75.00%), Query Frame = 0


Query: 67  VAQTSDWAQEDDTITIDPKLGDNEEAEDGPHWENQELSETESRISDWEGEGEGEDDGGSE 126
           VAQTS+W QE  T  +        E E  P          E  +S W  E +  D+GG  
Sbjct: 2   VAQTSEWEQEGSTNAV-------LEGESDP----------EGAVS-WGSETQVSDEGG-- 61

Query: 127 AEGEEEEGPYEEPNEDAKLFVGNLPYDVDSQKLAMLFEKTGTVEIAEVIYNRETDQSRGF 186
            EG +    + EP E+AKLFVGNLPYDVDS+KLA +F+  G VEIAEVIYNRETD+SRGF
Sbjct: 62  VEGGQ---GFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGF 121

Query: 187 GFVTMSTVEEAEKAVDTFNRYELSGRLLTVNKAAPRGSRPERQPR-TFQPAFRIYVGNLP 246
           GFVTMSTVEEAEKAV+  N Y++ GR LTVNKAAPRGS PER PR  F+P+ R+YVGNLP
Sbjct: 122 GFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGS-PERAPRGDFEPSCRVYVGNLP 181

Query: 247 WDVDNARLEQVFSEHGKVVEARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQSLEG 306
           WDVD +RLEQ+FSEHGKVV ARV+ DR++GRSRGFGFVTM+ E+ +NDAIAALDGQ+L+G
Sbjct: 182 WDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDG 233

Query: 307 RAIRVNVAEEKPRRNF 322
           RA+RVNVAEE+PRR F
Sbjct: 242 RAVRVNVAEERPRRAF 233

[Close]

BLAST of HG10008727 vs. ExPASy TrEMBL
Match: A0A5A7USX4 (Ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G00900 PE=4 SV=1)

HSP 1 Score: 562.8 bits (1449), Expect = 9.4e-157
Identity = 296/332 (89.16%), Postives = 311/332 (93.67%), Query Frame = 0


Query: 1   MASTSATSILKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFNL--SSSHSLLFSPS 60
           MASTSATS+ K LSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPF+L  SSSHS  F PS
Sbjct: 1   MASTSATSLFKTLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSHSSCFYPS 60

Query: 61  KKKPHLPSVAQTSDWAQEDDTITIDPKLGDNEEAED--GPHWENQELSETESRISDWEGE 120
           KKKPHLPSVAQTSDWAQEDDT+TIDPKL ++E+AE+  GPHWEN+ELSETESRISDWEGE
Sbjct: 61  KKKPHLPSVAQTSDWAQEDDTMTIDPKLDNDEDAEEEGGPHWENEELSETESRISDWEGE 120

Query: 121 GEGEDDGGSEAE--GEEEE-----GPYEEPNEDAKLFVGNLPYDVDSQKLAMLFEKTGTV 180
           GEGE DGGSEAE  G+EEE     GPYEEPNEDAKLFVGNLPYD+DS+KLAMLFEK GTV
Sbjct: 121 GEGE-DGGSEAEVGGDEEEEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTV 180

Query: 181 EIAEVIYNRETDQSRGFGFVTMSTVEEAEKAVDTFNRYELSGRLLTVNKAAPRGSRPERQ 240
           EIAEVIYNRETD+SRGFGFVTMSTVEEAEKAVDTFNRYELSGRLLTVNKAAPRG+R ERQ
Sbjct: 181 EIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYELSGRLLTVNKAAPRGTRQERQ 240

Query: 241 PRTFQPAFRIYVGNLPWDVDNARLEQVFSEHGKVVEARVLYDRDSGRSRGFGFVTMADET 300
           PR FQPAFRIYVGNLPWDVDNARLEQVFSEHGKVV+ARVLYDRDSGRSRGFGFVTMADET
Sbjct: 241 PRPFQPAFRIYVGNLPWDVDNARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMADET 300

Query: 301 GMNDAIAALDGQSLEGRAIRVNVAEEKPRRNF 322
           GMNDAIAALDGQSLEGRAIRVNVAEE+PRRNF
Sbjct: 301 GMNDAIAALDGQSLEGRAIRVNVAEERPRRNF 331

[Close]

BLAST of HG10008727 vs. ExPASy TrEMBL
Match: A0A5D3BIH5 (28 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00930 PE=4 SV=1)

HSP 1 Score: 561.2 bits (1445), Expect = 2.7e-156
Identity = 295/333 (88.59%), Postives = 310/333 (93.09%), Query Frame = 0


Query: 1   MASTSATSILKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFNL--SSSHSLLFSPS 60
           MASTSATS+ KPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPF+L  SSSHS  F PS
Sbjct: 1   MASTSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSHSSCFYPS 60

Query: 61  KKKPHLPSVAQTSDWAQEDDTITIDPKLGDNEEAED--GPHWENQELSETESRISDWEGE 120
           KKKPHLPSVAQTSDWAQEDDT+TIDPKL ++E+AE+  GPHWEN+ELSETESRISDWEGE
Sbjct: 61  KKKPHLPSVAQTSDWAQEDDTMTIDPKLDNDEDAEEEGGPHWENEELSETESRISDWEGE 120

Query: 121 GEGEDDGGSEAE--GEEEE------GPYEEPNEDAKLFVGNLPYDVDSQKLAMLFEKTGT 180
           GE   DGGSEAE  G+EEE      GPYEEPNEDAKLFVGNLPYD+DS+KLAMLFEK GT
Sbjct: 121 GE---DGGSEAEVGGDEEEEEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGT 180

Query: 181 VEIAEVIYNRETDQSRGFGFVTMSTVEEAEKAVDTFNRYELSGRLLTVNKAAPRGSRPER 240
           VEIAEVIYNRETD+SRGFGFVTMSTVEEAEKAVDTFNRYELSGRLLTVNKAAPRG+R ER
Sbjct: 181 VEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYELSGRLLTVNKAAPRGTRQER 240

Query: 241 QPRTFQPAFRIYVGNLPWDVDNARLEQVFSEHGKVVEARVLYDRDSGRSRGFGFVTMADE 300
           QPR FQPAFRIYVGNLPWDVDNARLEQVFSEHGKVV+ARVLYDRDSGRSRGFGFVTMADE
Sbjct: 241 QPRPFQPAFRIYVGNLPWDVDNARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMADE 300

Query: 301 TGMNDAIAALDGQSLEGRAIRVNVAEEKPRRNF 322
           TGMNDAIAALDGQSLEGRAIRVNVAEE+PRRNF
Sbjct: 301 TGMNDAIAALDGQSLEGRAIRVNVAEERPRRNF 330

[Close]

BLAST of HG10008727 vs. ExPASy TrEMBL
Match: A0A0A0LNS8 (Ribonucleoprotein OS=Cucumis sativus OX=3659 GN=Csa_1G002890 PE=4 SV=1)

HSP 1 Score: 549.7 bits (1415), Expect = 8.3e-153
Identity = 289/333 (86.79%), Postives = 306/333 (91.89%), Query Frame = 0


Query: 1   MASTSATSILKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFNL--SSSHSLLFSPS 60
           MAS+SATS+ KPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPF+L  SSS+S  FSPS
Sbjct: 74  MASSSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSYSSGFSPS 133

Query: 61  KKKPHLPSVAQTSDWAQEDDTITIDPKLGDNEEA--EDGPHWENQELSETESRISDWEGE 120
           KKKPHLPSVAQTSDWAQEDDTITIDPKL ++E    E GPHWEN+ELSETESRISDWEGE
Sbjct: 134 KKKPHLPSVAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWENEELSETESRISDWEGE 193

Query: 121 GEGEDDGGSEAE--GEEEE------GPYEEPNEDAKLFVGNLPYDVDSQKLAMLFEKTGT 180
           GE   DGGSEAE  G+EEE      GPYEEPNEDAKLFVGNLPYD+DS+KLAMLFEK GT
Sbjct: 194 GE---DGGSEAEVGGDEEEDEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGT 253

Query: 181 VEIAEVIYNRETDQSRGFGFVTMSTVEEAEKAVDTFNRYELSGRLLTVNKAAPRGSRPER 240
           VEIAEVIYNRETD+SRGFGFVTMSTVEEAEKAVDTFNRY+LSGRLLTVNKAAPRGSR ER
Sbjct: 254 VEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQER 313

Query: 241 QPRTFQPAFRIYVGNLPWDVDNARLEQVFSEHGKVVEARVLYDRDSGRSRGFGFVTMADE 300
           +PR FQP FRIYVGNLPWDVDN RLEQ+FSEHGKVV+ARVLYDRDSGRSRGFGFVTMADE
Sbjct: 314 EPRPFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADE 373

Query: 301 TGMNDAIAALDGQSLEGRAIRVNVAEEKPRRNF 322
           TGMNDAIAALDGQSL+GRAIRVNVAEE+PRRNF
Sbjct: 374 TGMNDAIAALDGQSLDGRAIRVNVAEERPRRNF 403

[Close]

BLAST of HG10008727 vs. ExPASy TrEMBL
Match: A0A6J1C316 (28 kDa ribonucleoprotein, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111006981 PE=4 SV=1)

HSP 1 Score: 532.3 bits (1370), Expect = 1.4e-147
Identity = 289/339 (85.25%), Postives = 299/339 (88.20%), Query Frame = 0


Query: 1   MASTSATSILKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFNL-SSSHSLLFSPSK 60
           MASTSATSILKPLSK DSC LSLPS+FT RPPH+FLSFPSK I F+L SSSHS  FS SK
Sbjct: 1   MASTSATSILKPLSKADSCLLSLPSVFTCRPPHSFLSFPSKLIRFHLSSSSHSSPFSLSK 60

Query: 61  KKPHLPS----VAQTSDWAQEDDTITIDPKLGDNEEAED--GPHWENQELSETESRISDW 120
           KKPH  S    VAQTSDWAQEDDTITIDPKLG +EE ED  GPHWENQELSETESRISDW
Sbjct: 61  KKPHPSSLVSFVAQTSDWAQEDDTITIDPKLGGDEEEEDEQGPHWENQELSETESRISDW 120

Query: 121 EGEGEGEDDGGSEAEG-----------EEEEGPYEEPNEDAKLFVGNLPYDVDSQKLAML 180
           EGE E   DGGSEAEG           EEEEG YEEPNEDAKLFVGNLPYDVDSQKLAM+
Sbjct: 121 EGEAE---DGGSEAEGEDGEGGLLEEEEEEEGSYEEPNEDAKLFVGNLPYDVDSQKLAMI 180

Query: 181 FEKTGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAEKAVDTFNRYELSGRLLTVNKAAPR 240
           F K GTVEIAEVIYNRETDQSRGFGFVTMSTVEEAEKAVDTFNRYEL GRLLTVNKAAPR
Sbjct: 181 FGKAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAEKAVDTFNRYELEGRLLTVNKAAPR 240

Query: 241 GSRPERQPRTFQPAFRIYVGNLPWDVDNARLEQVFSEHGKVVEARVLYDRDSGRSRGFGF 300
           G+RPER PRTFQ +FRIYVGNLPWDVDNARLEQVFSEHGKVVEARVLYDRD+GRSRGFGF
Sbjct: 241 GARPERTPRTFQSSFRIYVGNLPWDVDNARLEQVFSEHGKVVEARVLYDRDTGRSRGFGF 300

Query: 301 VTMADETGMNDAIAALDGQSLEGRAIRVNVAEEKPRRNF 322
           VTMADETGMNDAIAALDGQSL+GRAIRVNVAEE+PRRNF
Sbjct: 301 VTMADETGMNDAIAALDGQSLDGRAIRVNVAEERPRRNF 336

[Close]

BLAST of HG10008727 vs. ExPASy TrEMBL
Match: A0A6J1JFY1 (28 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111484771 PE=4 SV=1)

HSP 1 Score: 522.7 bits (1345), Expect = 1.1e-144
Identity = 278/335 (82.99%), Postives = 298/335 (88.96%), Query Frame = 0


Query: 1   MASTSATSILKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKF--IPFNLSSSH-SLLFSP 60
           MAS+SATSILKPLSK DSC LSLPSLFT RPPH+FLSFPSKF   PF+LSSSH S LFS 
Sbjct: 1   MASSSATSILKPLSKADSCLLSLPSLFTCRPPHSFLSFPSKFTTAPFHLSSSHCSSLFSS 60

Query: 61  SKKKPHL----PSVAQTSDWAQEDDTITIDPKLGDNEEAEDGPHWENQELSETESRISDW 120
           SKKK HL     SVAQ+S+W QEDDTITIDPKL  +E+ E+GPHWENQELSE ESRISDW
Sbjct: 61  SKKKTHLLSLVASVAQSSEWGQEDDTITIDPKLSGDEDGEEGPHWENQELSENESRISDW 120

Query: 121 EGEGEGEDDGGSEAE-------GEEEEGPYEEPNEDAKLFVGNLPYDVDSQKLAMLFEKT 180
           EGEGEGEDDGGSE E       G+EEEGP EEPNEDAKL+VGNL YDVDSQKLAMLFEK 
Sbjct: 121 EGEGEGEDDGGSEGEGGGVLELGDEEEGPLEEPNEDAKLYVGNLSYDVDSQKLAMLFEKA 180

Query: 181 GTVEIAEVIYNRETDQSRGFGFVTMSTVEEAEKAVDTFNRYELSGRLLTVNKAAPRGSRP 240
           GTVEIAEVIY+R++D+SRGFGFVTMS+VEEAEKAVDTFNRYE  GR L VNKAA RGSRP
Sbjct: 181 GTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRTLVVNKAAARGSRP 240

Query: 241 ERQPRTFQPAFRIYVGNLPWDVDNARLEQVFSEHGKVVEARVLYDRDSGRSRGFGFVTMA 300
           ERQPRTFQPAFRIYVGNL W+VD+ARLEQVFSEHGKVV+ARVLYDRDSGRSRGFGFVTMA
Sbjct: 241 ERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMA 300

Query: 301 DETGMNDAIAALDGQSLEGRAIRVNVAEEKPRRNF 322
           DETGMNDAIAALDGQS++GRAIRVNVAEEKPRRNF
Sbjct: 301 DETGMNDAIAALDGQSVDGRAIRVNVAEEKPRRNF 335

[Close]

BLAST of HG10008727 vs. TAIR 10
Match: AT4G24770.1 (31-kDa RNA binding protein )

HSP 1 Score: 326.2 bits (835), Expect = 2.9e-89
Identity = 196/344 (56.98%), Postives = 239/344 (69.48%), Query Frame = 0


Query: 1   MASTSATSILKPLSKPDSCFLSL-------------------PSLFTGRPPHTFLSFPSK 60
           MAS+  TS LKPL+  DS   ++                    SL TGR     ++ P  
Sbjct: 1   MASSIVTSSLKPLAMADSSSSTIFSHPSISSTISSSRIRSSSVSLLTGR-----INLPLS 60

Query: 61  FIPFNLSSSHSLLFSPSKKKPHLPSVAQTSDWAQEDDTITIDPKLGDNEEAEDGPHWENQ 120
           F   +LS       +  KK P +  VAQTSDWA+E    ++       EE E+    E+Q
Sbjct: 61  FSRVSLSLKTK---THLKKSPFVSFVAQTSDWAEEGGEGSVAV-----EETENS--LESQ 120

Query: 121 ELSETESRISDWEGEGEGEDDGGSEAEGEEEEG------PYEEPNEDAKLFVGNLPYDVD 180
           ++SE +    D     EG+   G E+EG+  EG       + EP+E+AKLFVGNL YDV+
Sbjct: 121 DVSEGDESEGD---ASEGDVSEGDESEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVN 180

Query: 181 SQKLAMLFEKTGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAEKAVDTFNRYELSGRLLT 240
           SQ LAMLFE+ GTVEIAEVIYNRETDQSRGFGFVTMS+V+EAE AV+ FNRY+L+GRLLT
Sbjct: 181 SQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLT 240

Query: 241 VNKAAPRGSRPERQPRTFQPAFRIYVGNLPWDVDNARLEQVFSEHGKVVEARVLYDRDSG 300
           VNKAAPRGSRPER PR ++PAFR+YVGNLPWDVDN RLEQ+FSEHGKVVEARV+YDR++G
Sbjct: 241 VNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETG 300

Query: 301 RSRGFGFVTMADETGMNDAIAALDGQSLEGRAIRVNVAEEKPRR 320
           RSRGFGFVTM+D   +N+AI+ALDGQ+LEGRAIRVNVAEE+P R
Sbjct: 301 RSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPR 326

[Close]

BLAST of HG10008727 vs. TAIR 10
Match: AT5G50250.1 (chloroplast RNA-binding protein 31B )

HSP 1 Score: 293.5 bits (750), Expect = 2.1e-79
Identity = 175/319 (54.86%), Postives = 215/319 (67.40%), Query Frame = 0


Query: 4   TSATSILKPLSKPDSCFLSLPSLF--TGRPPHTF-LSFPSKFIPFNLSSSHSLLFSPSKK 63
           T +  +L   +   S    +PS+F  +    H F  S  S+ +   LS     L + S  
Sbjct: 7   TPSLKLLAMTNSSSSTLFCIPSIFNISSSESHRFNFSLSSRPVNLTLSLKSKTLRNSS-- 66

Query: 64  KPHLPSVAQTSDWAQEDDTITIDPKLGDNEEAEDGPHWENQELSETESRISDWEGEGEGE 123
            P +  V+QTS+WA+E             EE EDG       +  T   + +     E E
Sbjct: 67  -PVVTFVSQTSNWAEE-------------EEGEDG------SIGGTSVTVDE---SFESE 126

Query: 124 DDGGSEAEGEEEEGPYEEPNEDAKLFVGNLPYDVDSQKLAMLFEKTGTVEIAEVIYNRET 183
           D  G           + EP E+AKLFVGNLPYDVDSQ LAMLFE+ GTVEI+EVIYNR+T
Sbjct: 127 DGVG-----------FPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDT 186

Query: 184 DQSRGFGFVTMSTVEEAEKAVDTFNRYELSGRLLTVNKAAPRGSRPERQPRTFQPAFRIY 243
           DQSRGFGFVTMSTVEEAEKAV+ FN +E++GR LTVN+AAPRGSRPERQPR +  AFRIY
Sbjct: 187 DQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIY 246

Query: 244 VGNLPWDVDNARLEQVFSEHGKVVEARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDG 303
           VGNLPWDVD+ RLE++FSEHGKVV+ARV+ DR++GRSRGFGFV M++E  +N AIAALDG
Sbjct: 247 VGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDG 289

Query: 304 QSLEGRAIRVNVAEEKPRR 320
           Q+LEGRAI+VNVAEE+ RR
Sbjct: 307 QNLEGRAIKVNVAEERTRR 289

[Close]

BLAST of HG10008727 vs. TAIR 10
Match: AT2G37220.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 186.0 bits (471), Expect = 4.6e-47
Identity = 110/223 (49.33%), Postives = 138/223 (61.88%), Query Frame = 0


Query: 116 EGEGEDDGGSEAEGEEEEGPYEEPNEDAKLFVGNLPYDVDSQKLAMLFEKTGTVEIAEVI 175
           E E E+DG ++    +E    +  + D KLFVGNLP++VDS +LA LFE  G VE+ EVI
Sbjct: 68  EFEVEEDGFADVAPPKE----QSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVI 127

Query: 176 YNRETDQSRGFGFVTMSTVEEAEKAVDTFNRYELSGRLLTVNKAAPRGSRPERQPRTFQP 235
           Y++ T +SRGFGFVTMS+V E E A   FN YEL GR L VN   P   R +   R  + 
Sbjct: 128 YDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRS 187

Query: 236 AF-------------------RIYVGNLPWDVDNARLEQVFSEHGKVVEARVLYDRDSGR 295
           +F                   R+YVGNL W VD+  LE +FSE GKVVEARV+YDRDSGR
Sbjct: 188 SFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGR 247

Query: 296 SRGFGFVTMADETGMNDAIAALDGQSLEGRAIRVNVAEEKPRR 320
           S+GFGFVT      + +AI +LDG  L+GR IRV+ AE +P R
Sbjct: 248 SKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPR 286

[Close]

BLAST of HG10008727 vs. TAIR 10
Match: AT3G53460.1 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 160.6 bits (405), Expect = 2.1e-39
Identity = 113/275 (41.09%), Postives = 140/275 (50.91%), Query Frame = 0


Query: 111 SDWEGEGEGEDDGGSEAEGEEEEGPYEEP--NEDAKLFVGNLPYDVDSQKLAMLFEKTGT 170
           SD+E E   EDD    A+G ++  P E    + D KLFVGNL ++VDS +LA LFE  G 
Sbjct: 71  SDFEVE---EDD--MFADG-DDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGN 130

Query: 171 VEIAEVIYNRETDQSRGFGFVTMSTVEEAEKAVDTFNRYELSGRLLTVNKAAPRGSRPE- 230
           VE+ EVIY++ T +SRGFGFVTMST  E E A   FN YE  GR L VN   P   R E 
Sbjct: 131 VEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPPKREES 190

Query: 231 --RQPRT----------------------------------------------------- 290
             R PR+                                                     
Sbjct: 191 FSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGSQRSSYG 250

Query: 291 --------FQPAFRIYVGNLPWDVDNARLEQVFSEHGKVVEARVLYDRDSGRSRGFGFVT 320
                        R+YVGNL W VD+  LE +F+E GKVVEARV+YDRDSGRS+GFGFVT
Sbjct: 251 SGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVT 310

[Close]

BLAST of HG10008727 vs. TAIR 10
Match: AT3G53460.2 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 160.6 bits (405), Expect = 2.1e-39
Identity = 113/275 (41.09%), Postives = 140/275 (50.91%), Query Frame = 0


Query: 111 SDWEGEGEGEDDGGSEAEGEEEEGPYEEP--NEDAKLFVGNLPYDVDSQKLAMLFEKTGT 170
           SD+E E   EDD    A+G ++  P E    + D KLFVGNL ++VDS +LA LFE  G 
Sbjct: 71  SDFEVE---EDD--MFADG-DDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGN 130

Query: 171 VEIAEVIYNRETDQSRGFGFVTMSTVEEAEKAVDTFNRYELSGRLLTVNKAAPRGSRPE- 230
           VE+ EVIY++ T +SRGFGFVTMST  E E A   FN YE  GR L VN   P   R E 
Sbjct: 131 VEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPPKREES 190

Query: 231 --RQPRT----------------------------------------------------- 290
             R PR+                                                     
Sbjct: 191 FSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGSQRSSYG 250

Query: 291 --------FQPAFRIYVGNLPWDVDNARLEQVFSEHGKVVEARVLYDRDSGRSRGFGFVT 320
                        R+YVGNL W VD+  LE +F+E GKVVEARV+YDRDSGRS+GFGFVT
Sbjct: 251 SGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVT 310

The following BLAST results are available for this feature:

BLAST of HG10008727 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038878997.1	3.1e-170	96.57	28 kDa ribonucleoprotein, chloroplastic-like [Benincasa hispida]	[more]
KAA0057807.1	1.9e-156	89.16	Ribonucleoprotein [Cucumis melo var. makuwa]	[more]
TYJ98491.1	5.7e-156	88.59	28 kDa ribonucleoprotein [Cucumis melo var. makuwa]	[more]
XP_004138078.1	1.7e-152	86.79	28 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >KAE8652388.1 hypothet...	[more]
XP_022134798.1	2.8e-147	85.25	28 kDa ribonucleoprotein, chloroplastic-like [Momordica charantia]	[more]

BLAST of HG10008727 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q04836	4.0e-88	56.98	31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31A...	[more]
P19682	2.7e-84	57.00	28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
P19683	2.5e-82	55.35	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
Q9FGS0	2.9e-78	54.86	RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31...	[more]
P28644	1.2e-76	63.28	28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1	[more]

BLAST of HG10008727 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7USX4	9.4e-157	89.16	Ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G00...	[more]
A0A5D3BIH5	2.7e-156	88.59	28 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A0A0LNS8	8.3e-153	86.79	Ribonucleoprotein OS=Cucumis sativus OX=3659 GN=Csa_1G002890 PE=4 SV=1	[more]
A0A6J1C316	1.4e-147	85.25	28 kDa ribonucleoprotein, chloroplastic-like OS=Momordica charantia OX=3673 GN=L...	[more]
A0A6J1JFY1	1.1e-144	82.99	28 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]

BLAST of HG10008727 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24770.1	2.9e-89	56.98	31-kDa RNA binding protein	[more]
AT5G50250.1	2.1e-79	54.86	chloroplast RNA-binding protein 31B	[more]
AT2G37220.1	4.6e-47	49.33	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G53460.1	2.1e-39	41.09	chloroplast RNA-binding protein 29	[more]
AT3G53460.2	2.1e-39	41.09	chloroplast RNA-binding protein 29	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 238..311 e-value: 3.0E-28 score: 109.8 coord: 144..217 e-value: 2.6E-25 score: 100.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 145..214 e-value: 2.9E-20 score: 71.9 coord: 239..309 e-value: 9.9E-21 score: 73.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 143..221 score: 18.529724
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 237..315 score: 20.132933
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 229..320 e-value: 1.6E-28 score: 101.3
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 82..228 e-value: 3.7E-28 score: 100.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..140
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 114..138
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..113
None	No IPR available	PANTHER	PTHR48025:SF8	RIBONUCLEOPROTEIN	coord: 1..320
None	No IPR available	PANTHER	PTHR48025	OS02G0815200 PROTEIN	coord: 1..320
None	No IPR available	CDD	cd12399	RRM_HP0827_like	coord: 144..221 e-value: 2.21998E-34 score: 118.485
None	No IPR available	CDD	cd12399	RRM_HP0827_like	coord: 238..314 e-value: 5.09309E-34 score: 117.714
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 138..231
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 232..319

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10008727.1	HG10008727.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1901259	chloroplast rRNA processing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding