HG10008678 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10008678
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Zinc finger FYVE domain-containing protein 26 isoform 3
Location	Chr10: 25153445 .. 25153810 (+)
RNA-Seq Expression	HG10008678
Synteny	HG10008678

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGATGAAACTTATATTTTCTCGAATGATGGTGACTTTGGTCCTGAAGTAGATGCTCCTTTTATTCCGAGTGATATTTTTTCTTCCCAAGAAGAGCCTCCAGAAGAAGTTAAGAATTCATCACCTCTTCAGCCTATAGTGAGTTCTAACAAGATGAAGCCAAGACTCATGAAAGCTTTCCCGCTGCATTATTCTCAAAAGAAAGAAGTTCACAGTGTTCTTGATGGTGAAGAGAGAAATTTGGATGCTTTGGAGGAGTCGTGCACTCGTCTTTTGATTTCTTCATCAGTCGCTTCTAAGCATCATCAATCTTCAAATCCCAAAAAGTTCTTTAAGCAATCTATTATATCTCTCCCCATATGA

mRNA sequence

ATGGAAGATGAAACTTATATTTTCTCGAATGATGGTGACTTTGGTCCTGAAGTAGATGCTCCTTTTATTCCGAGTGATATTTTTTCTTCCCAAGAAGAGCCTCCAGAAGAAGTTAAGAATTCATCACCTCTTCAGCCTATAGTGAGTTCTAACAAGATGAAGCCAAGACTCATGAAAGCTTTCCCGCTGCATTATTCTCAAAAGAAAGAAGTTCACAGTGTTCTTGATGGTGAAGAGAGAAATTTGGATGCTTTGGAGGAGTCGTGCACTCGTCTTTTGATTTCTTCATCAGTCGCTTCTAAGCATCATCAATCTTCAAATCCCAAAAAGTTCTTTAAGCAATCTATTATATCTCTCCCCATATGA

Coding sequence (CDS)

ATGGAAGATGAAACTTATATTTTCTCGAATGATGGTGACTTTGGTCCTGAAGTAGATGCTCCTTTTATTCCGAGTGATATTTTTTCTTCCCAAGAAGAGCCTCCAGAAGAAGTTAAGAATTCATCACCTCTTCAGCCTATAGTGAGTTCTAACAAGATGAAGCCAAGACTCATGAAAGCTTTCCCGCTGCATTATTCTCAAAAGAAAGAAGTTCACAGTGTTCTTGATGGTGAAGAGAGAAATTTGGATGCTTTGGAGGAGTCGTGCACTCGTCTTTTGATTTCTTCATCAGTCGCTTCTAAGCATCATCAATCTTCAAATCCCAAAAAGTTCTTTAAGCAATCTATTATATCTCTCCCCATATGA

Protein sequence

MEDETYIFSNDGDFGPEVDAPFIPSDIFSSQEEPPEEVKNSSPLQPIVSSNKMKPRLMKAFPLHYSQKKEVHSVLDGEERNLDALEESCTRLLISSSVASKHHQSSNPKKFFKQSIISLPI

Homology

[Close]

BLAST of HG10008678 vs. NCBI nr
Match: TYK31394.1 (Zinc finger FYVE domain-containing protein 26 isoform 3 [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 3.9e-09
Identity = 46/85 (54.12%), Postives = 55/85 (64.71%), Query Frame = 0


Query: 1   MEDETYIFSNDGDFGPEVDAPFIPSDIFSSQEEPPEEVKNSSPLQPIVSSNKMKPRLMKA 60
           MED+ +  +NDGD GP+V  P       S QEE  EEV +S  LQP  SS+++K  LMK 
Sbjct: 524 MEDDAFNLANDGDDGPKVVDPHFFLLKNSLQEEFLEEVIHSLSLQPTASSSRVKLWLMKP 583

Query: 61  FPLHYSQKKEVHSVLDGEERNLDAL 86
           FPL YS+KKEV S  D EERN DAL
Sbjct: 584 FPLSYSRKKEVPSGFDCEERNSDAL 608

[Close]

BLAST of HG10008678 vs. ExPASy TrEMBL
Match: A0A5D3E5Z7 (Zinc finger FYVE domain-containing protein 26 isoform 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G007020 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.9e-09
Identity = 46/85 (54.12%), Postives = 55/85 (64.71%), Query Frame = 0


Query: 1   MEDETYIFSNDGDFGPEVDAPFIPSDIFSSQEEPPEEVKNSSPLQPIVSSNKMKPRLMKA 60
           MED+ +  +NDGD GP+V  P       S QEE  EEV +S  LQP  SS+++K  LMK 
Sbjct: 524 MEDDAFNLANDGDDGPKVVDPHFFLLKNSLQEEFLEEVIHSLSLQPTASSSRVKLWLMKP 583

Query: 61  FPLHYSQKKEVHSVLDGEERNLDAL 86
           FPL YS+KKEV S  D EERN DAL
Sbjct: 584 FPLSYSRKKEVPSGFDCEERNSDAL 608

The following BLAST results are available for this feature:

BLAST of HG10008678 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK31394.1	3.9e-09	54.12	Zinc finger FYVE domain-containing protein 26 isoform 3 [Cucumis melo var. makuw...	[more]

BLAST of HG10008678 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10008678 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E5Z7	1.9e-09	54.12	Zinc finger FYVE domain-containing protein 26 isoform 3 OS=Cucumis melo var. mak...	[more]

BLAST of HG10008678 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 68..95
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..49

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10008678.1	HG10008678.1	mRNA