HG10008542 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10008542
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 isoform X1
Location	Chr10: 24034316 .. 24035748 (+)
RNA-Seq Expression	HG10008542
Synteny	HG10008542

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGGCGAAAACGACTTGAAAACGTGGGTTTCGGATCAGTTAATGTCACTGCTTGGTTTTTCTCAGCCAACGATTGTGCAGTATATGATTGGACTATGTACTGCTTCTCCTTATTTAGTGATTTAACACTCCTTTGGGTATTTCAATTATGAATTGTAAAAGATATGGTATTAATGGCATATTTTTGACCTTGACCATTCTATTACAGCCAAACAAGCAACATCACCTGCCGATGTAGTGAGCAAGTTGGTGATAGATTTCTCCTTGCCATCTTCCGGTGAAACATTGGCTTTTGCTGAAGGAATTTTCTCTAGAGTGCCACGCAAGCAATCATCTGGTTTAAATGTATTAGTTGAAATTTTGTTTATAATTATCACGTGATTCATATATTAAGTGTTCTTTAATTTTTTGCTGTTCCATTCCCTTCACTTATTGCATTTACAGCTTTCTTGACATTGGATTACCTAATTTAGTATAATTTTTTGTTGTCCTGCCTCAGCTTTATCAGAAGCAAGAGAGAGAAGCTGCAATTTTAGCAAGAAAACAAAATACATATGCACTGCTTGATGCTGACGACGAAGATGTTGTTGAAGATAAAGGACGCAGCAGTGATCAGAGAGAAACAGAAAATCGCAAGAAACATTTTAGAAAGAAACATGAATATCAAGAAGATGAAGATGATGAGAAGGTATGATATATGGAATGGTATATATATATATATATACACACACACACACACACGTTCTTTTAAGTGGGTTATTTTTTCTCTGACTTGATGGGACAATGCAGGAAAGTGCTCTTGAAAGAGAAAATAGGCAGGTTAAACGACAGGCATCCAGTTCTGAAGACGATGACTCTGAGGTACACGTCTGGGCTTATTTGGGACTTACCTTCTTGATTAATAATGTCAAATGTTTCTTTGGTACTTGGATGTATCTTTTACTCGGATAAAAACCTATTCAGTGAAACAAGTTTTCTTAACATCAAGTTTAAATCAAAATGCAGTCAGAGGAGGAGCGATTGCAAGATCAAAGAGAGAGGGAGCAATTAGAGCGAAATATAAGGGAAAGGGATGCTGCAGGAACCAAAAAGGTATACTCGTATAGAACTAGCTTGCTATACCTTATTTTCCCTCTCTTTCAAAAATGATTCATCCTTTCTTATTTTTTAATTTTCCTGCATCAAGATAAAAAGTTACAACGAAGTCTAGAATTGAACCAAATAAAACCTAAAACTATGGAATCTCACAGACCCCACTCAACACTGCCTTCCGAACAGAACTCCTCAGGAGTTATGCTTTTTTGCGGACTTCATGCATCAACGAAATCTATAGTGATGTTCTAAGAACTTCATTATCTATTCTTCTGATTCTGTTCATTCTTTGACAGTTAACAGAGCAGAAATTGAGCAGGAAGGAGGAAGGTAACTGA

mRNA sequence

ATGGGGGGCGAAAACGACTTGAAAACGTGGGTTTCGGATCAGTTAATGTCACTGCTTGGTTTTTCTCAGCCAACGATTGTGCAGTATATGATTGGACTATCCAAACAAGCAACATCACCTGCCGATGTAGTGAGCAAGTTGGTGATAGATTTCTCCTTGCCATCTTCCGGTGAAACATTGGCTTTTGCTGAAGGAATTTTCTCTAGAGTGCCACGCAAGCAATCATCTGGTTTAAATGAAAGTGCTCTTGAAAGAGAAAATAGGCAGGTTAAACGACAGGCATCCAGTTCTGAAGACGATGACTCTGAGTCAGAGGAGGAGCGATTGCAAGATCAAAGAGAGAGGGAGCAATTAGAGCGAAATATAAGGGAAAGGGATGCTGCAGGAACCAAAAAGTTAACAGAGCAGAAATTGAGCAGGAAGGAGGAAGGTAACTGA

Coding sequence (CDS)

ATGGGGGGCGAAAACGACTTGAAAACGTGGGTTTCGGATCAGTTAATGTCACTGCTTGGTTTTTCTCAGCCAACGATTGTGCAGTATATGATTGGACTATCCAAACAAGCAACATCACCTGCCGATGTAGTGAGCAAGTTGGTGATAGATTTCTCCTTGCCATCTTCCGGTGAAACATTGGCTTTTGCTGAAGGAATTTTCTCTAGAGTGCCACGCAAGCAATCATCTGGTTTAAATGAAAGTGCTCTTGAAAGAGAAAATAGGCAGGTTAAACGACAGGCATCCAGTTCTGAAGACGATGACTCTGAGTCAGAGGAGGAGCGATTGCAAGATCAAAGAGAGAGGGAGCAATTAGAGCGAAATATAAGGGAAAGGGATGCTGCAGGAACCAAAAAGTTAACAGAGCAGAAATTGAGCAGGAAGGAGGAAGGTAACTGA

Protein sequence

MGGENDLKTWVSDQLMSLLGFSQPTIVQYMIGLSKQATSPADVVSKLVIDFSLPSSGETLAFAEGIFSRVPRKQSSGLNESALERENRQVKRQASSSEDDDSESEEERLQDQREREQLERNIRERDAAGTKKLTEQKLSRKEEGN

Homology

[Close]

BLAST of HG10008542 vs. NCBI nr
Match: KAA0057984.1 (pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 [Cucumis melo var. makuwa])

HSP 1 Score: 219.5 bits (558), Expect = 1.8e-53
Identity = 139/206 (67.48%), Postives = 142/206 (68.93%), Query Frame = 0


Query: 1   MGGENDLKTWVSDQLMSLLGFSQPTIVQYMIGLSKQATSPADVVSKLVIDFSLPSSGETL 60
           MGGENDLKTWVSDQLMSLLGFSQPTIVQYMIGLSKQATSPADVV+KLVIDFSLPSSGETL
Sbjct: 1   MGGENDLKTWVSDQLMSLLGFSQPTIVQYMIGLSKQATSPADVVNKLVIDFSLPSSGETL 60

Query: 61  AFAEGIFSRVPRKQSSGLN----------------------------------------- 120
           AFAEGIFSRVPRKQSSGLN                                         
Sbjct: 61  AFAEGIFSRVPRKQSSGLNLYQKQEREAAMLARKQKTYALLDADDEDDVEDKGRSSDLKE 120

Query: 121 ----------------------ESALERENRQVKRQASSSEDDDSESEEERLQDQREREQ 144
                                 ESALERENRQVKR+ASSSEDD SESEEERL+DQREREQ
Sbjct: 121 TENRKRHFRRKNEYQEDEDDEKESALERENRQVKRRASSSEDDSSESEEERLRDQREREQ 180

[Close]

BLAST of HG10008542 vs. NCBI nr
Match: XP_008453258.1 (PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 [Cucumis melo] >XP_008453259.1 PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 [Cucumis melo])

HSP 1 Score: 219.5 bits (558), Expect = 1.8e-53
Identity = 139/206 (67.48%), Postives = 142/206 (68.93%), Query Frame = 0


Query: 1   MGGENDLKTWVSDQLMSLLGFSQPTIVQYMIGLSKQATSPADVVSKLVIDFSLPSSGETL 60
           MGGENDLKTWVSDQLMSLLGFSQPTIVQYMIGLSKQATSPADVV+KLVIDFSLPSSGETL
Sbjct: 1   MGGENDLKTWVSDQLMSLLGFSQPTIVQYMIGLSKQATSPADVVNKLVIDFSLPSSGETL 60

Query: 61  AFAEGIFSRVPRKQSSGLN----------------------------------------- 120
           AFAEGIFSRVPRKQSSGLN                                         
Sbjct: 61  AFAEGIFSRVPRKQSSGLNLYQKQEREAAMLARKQKTYALLDADDEDDVEDKGRSSDLKE 120

Query: 121 ----------------------ESALERENRQVKRQASSSEDDDSESEEERLQDQREREQ 144
                                 ESALERENRQVKR+ASSSEDD SESEEERL+DQREREQ
Sbjct: 121 TENRKRHFRRKNEYQEDEDDEKESALERENRQVKRRASSSEDDSSESEEERLRDQREREQ 180

[Close]

BLAST of HG10008542 vs. NCBI nr
Match: XP_038879655.1 (pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 [Benincasa hispida] >XP_038879656.1 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 [Benincasa hispida] >XP_038879657.1 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 [Benincasa hispida] >XP_038879658.1 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 [Benincasa hispida] >XP_038879659.1 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 [Benincasa hispida] >XP_038879660.1 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 [Benincasa hispida])

HSP 1 Score: 214.9 bits (546), Expect = 4.5e-52
Identity = 136/205 (66.34%), Postives = 141/205 (68.78%), Query Frame = 0


Query: 1   MGGENDLKTWVSDQLMSLLGFSQPTIVQYMIGLSKQATSPADVVSKLVIDFSLPSSGETL 60
           MGGE DLKTWVSDQLMSLLGFSQPTIVQYMIGLSKQATSPADVVSKLVIDFSLPSSGETL
Sbjct: 1   MGGEKDLKTWVSDQLMSLLGFSQPTIVQYMIGLSKQATSPADVVSKLVIDFSLPSSGETL 60

Query: 61  AFAEGIFSRVPRKQSSGLN----------------------------------------- 120
           AFAEGIFSRVPRKQSSGLN                                         
Sbjct: 61  AFAEGIFSRVPRKQSSGLNLYQKQEREAASLARKQKTYALLDADDEDVEDKGRSSDPRET 120

Query: 121 ---------------------ESALERENRQVKRQASSSEDDDSESEEERLQDQREREQL 144
                                ESA+ERENRQVKR+ASSSEDD SESEEERL+DQREREQL
Sbjct: 121 KNREKHFRKKNEYQEDEDDEKESAIERENRQVKRRASSSEDDGSESEEERLRDQREREQL 180

[Close]

BLAST of HG10008542 vs. NCBI nr
Match: XP_011660328.1 (pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 [Cucumis sativus] >KGN63716.1 hypothetical protein Csa_013602 [Cucumis sativus])

HSP 1 Score: 213.0 bits (541), Expect = 1.7e-51
Identity = 138/208 (66.35%), Postives = 142/208 (68.27%), Query Frame = 0


Query: 1   MGGENDLKTWVSDQLMSLLGFSQPTIVQYMIGLSKQATSPADVVSKLVIDFSLPSSGETL 60
           MGGENDLKTWVSDQLMSLLGFSQPTIVQYMIGLSKQATSPADVV+KLVIDFSLPSSGETL
Sbjct: 1   MGGENDLKTWVSDQLMSLLGFSQPTIVQYMIGLSKQATSPADVVNKLVIDFSLPSSGETL 60

Query: 61  AFAEGIFSRVPRKQSSGLN----------------------------------------- 120
           AFAEGIFSRVPRKQSSGLN                                         
Sbjct: 61  AFAEGIFSRVPRKQSSGLNLYQKQEREAAMLARKQTTYALLDADDEDDVEDKGRSSDLKE 120

Query: 121 ----------------------ESALERENRQVKR--QASSSEDDDSESEEERLQDQRER 144
                                 ESALERENRQVKR  +ASSSED+ SESEEERL+DQRER
Sbjct: 121 TENRKKHFRRKNEYQEDEDDEKESALERENRQVKRRQRASSSEDESSESEEERLRDQRER 180

[Close]

BLAST of HG10008542 vs. NCBI nr
Match: XP_023005006.1 (pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 isoform X1 [Cucurbita maxima] >XP_023005014.1 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 isoform X1 [Cucurbita maxima])

HSP 1 Score: 206.5 bits (524), Expect = 1.6e-49
Identity = 130/206 (63.11%), Postives = 137/206 (66.50%), Query Frame = 0


Query: 1   MGGENDLKTWVSDQLMSLLGFSQPTIVQYMIGLSKQATSPADVVSKLVIDFSLPSSGETL 60
           MGGEND+KTW+SDQLMSLLGFSQPTIVQYMIGLSKQA SPADVVSKLV+DF LPSS ETL
Sbjct: 1   MGGENDMKTWISDQLMSLLGFSQPTIVQYMIGLSKQAASPADVVSKLVVDFGLPSSNETL 60

Query: 61  AFAEGIFSRVPRKQSSGLN----------------------------------------- 120
           AFAEGIFSRVPRK+S+GLN                                         
Sbjct: 61  AFAEGIFSRVPRKKSTGLNLYQKQEREAAILARNQKKYTLLDADDEEVLEDKGGSGDPRE 120

Query: 121 ----------------------ESALERENRQVKRQASSSEDDDSESEEERLQDQREREQ 144
                                 ESALERENRQVKR+ SSSEDD SESEEER +DQREREQ
Sbjct: 121 TENRKKRFRKKNEYQEDEDDEEESALERENRQVKRRTSSSEDDGSESEEERQRDQREREQ 180

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BLAST of HG10008542 vs. ExPASy Swiss-Prot
Match: F4IJV4 (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH6 OS=Arabidopsis thaliana OX=3702 GN=MEE29 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 6.0e-23
Identity = 86/206 (41.75%), Postives = 114/206 (55.34%), Query Frame = 0


Query: 3   GENDLKTWVSDQLMSLLGFSQPTIVQYMIGLSKQATSPADVVSKLV-IDFSLPSSGETLA 62
           G NDL TWVSD+LM LLGFSQ  +VQY+I ++KQ+ SP ++V +LV   FSL  SG+T A
Sbjct: 2   GSNDLNTWVSDKLMVLLGFSQTAVVQYLIAMAKQSKSPGELVRELVECGFSL--SGDTRA 61

Query: 63  FAEGIFSRVPRKQSSGLN-------ESAL----------------EREN----------- 122
           FAE I++R PRK + G+N       E+A+                E EN           
Sbjct: 62  FAEEIYARAPRK-TPGVNLYQQQEAEAAMLLKKQKTFSLLEADHDEDENNVKKQSASKTG 121

Query: 123 ------------------------------RQVKRQASSSEDDDSESEEERLQDQREREQ 144
                                         R V+R+ S  EDD +ESEEERL+DQRERE+
Sbjct: 122 KSDKGQKRFRKKSEQLEDDDDEVVIVREDKRNVRRKVSEDEDDGTESEEERLRDQREREE 181

[Close]

BLAST of HG10008542 vs. ExPASy Swiss-Prot
Match: Q8VY00 (Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 OS=Arabidopsis thaliana OX=3702 GN=ESP3 PE=1 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.0e-22
Identity = 78/203 (38.42%), Postives = 112/203 (55.17%), Query Frame = 0


Query: 5   NDLKTWVSDQLMSLLGFSQPTIVQYMIGLSKQATSPADVVSKLVIDFSLPSSGETLAFAE 64
           NDLKTWVSD+LM LLG+SQ  +V Y+I ++K+  SP ++V +LV D+   SSG+T +FAE
Sbjct: 4   NDLKTWVSDKLMMLLGYSQAAVVNYLIAMAKKTKSPTELVGELV-DYGFSSSGDTRSFAE 63

Query: 65  GIFSRVPRKQSSGLN--------------------------------------------- 124
            IF+RVPRK ++G+N                                             
Sbjct: 64  EIFARVPRK-TAGVNLYQKHEAEAAMLVRKQKTYALLDADDDEDEVVVEKKSSVSESRKS 123

Query: 125 -------------------ESALERENRQVKRQASSSEDDDSESEEERLQDQREREQLER 144
                              E A+  ++R V+R+  S EDD SESEEER++DQ+ERE+LE+
Sbjct: 124 DKGKKRFRKKSGQSDESDGEVAVREDSRHVRRKV-SEEDDGSESEEERVRDQKEREELEQ 183

[Close]

BLAST of HG10008542 vs. ExPASy TrEMBL
Match: A0A1S3BVU3 (pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 OS=Cucumis melo OX=3656 GN=LOC103494032 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 8.9e-54
Identity = 139/206 (67.48%), Postives = 142/206 (68.93%), Query Frame = 0


Query: 1   MGGENDLKTWVSDQLMSLLGFSQPTIVQYMIGLSKQATSPADVVSKLVIDFSLPSSGETL 60
           MGGENDLKTWVSDQLMSLLGFSQPTIVQYMIGLSKQATSPADVV+KLVIDFSLPSSGETL
Sbjct: 1   MGGENDLKTWVSDQLMSLLGFSQPTIVQYMIGLSKQATSPADVVNKLVIDFSLPSSGETL 60

Query: 61  AFAEGIFSRVPRKQSSGLN----------------------------------------- 120
           AFAEGIFSRVPRKQSSGLN                                         
Sbjct: 61  AFAEGIFSRVPRKQSSGLNLYQKQEREAAMLARKQKTYALLDADDEDDVEDKGRSSDLKE 120

Query: 121 ----------------------ESALERENRQVKRQASSSEDDDSESEEERLQDQREREQ 144
                                 ESALERENRQVKR+ASSSEDD SESEEERL+DQREREQ
Sbjct: 121 TENRKRHFRRKNEYQEDEDDEKESALERENRQVKRRASSSEDDSSESEEERLRDQREREQ 180

[Close]

BLAST of HG10008542 vs. ExPASy TrEMBL
Match: A0A5A7US39 (Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G002880 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 8.9e-54
Identity = 139/206 (67.48%), Postives = 142/206 (68.93%), Query Frame = 0


Query: 1   MGGENDLKTWVSDQLMSLLGFSQPTIVQYMIGLSKQATSPADVVSKLVIDFSLPSSGETL 60
           MGGENDLKTWVSDQLMSLLGFSQPTIVQYMIGLSKQATSPADVV+KLVIDFSLPSSGETL
Sbjct: 1   MGGENDLKTWVSDQLMSLLGFSQPTIVQYMIGLSKQATSPADVVNKLVIDFSLPSSGETL 60

Query: 61  AFAEGIFSRVPRKQSSGLN----------------------------------------- 120
           AFAEGIFSRVPRKQSSGLN                                         
Sbjct: 61  AFAEGIFSRVPRKQSSGLNLYQKQEREAAMLARKQKTYALLDADDEDDVEDKGRSSDLKE 120

Query: 121 ----------------------ESALERENRQVKRQASSSEDDDSESEEERLQDQREREQ 144
                                 ESALERENRQVKR+ASSSEDD SESEEERL+DQREREQ
Sbjct: 121 TENRKRHFRRKNEYQEDEDDEKESALERENRQVKRRASSSEDDSSESEEERLRDQREREQ 180

[Close]

BLAST of HG10008542 vs. ExPASy TrEMBL
Match: A0A0A0LUM2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G012660 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 8.3e-52
Identity = 138/208 (66.35%), Postives = 142/208 (68.27%), Query Frame = 0


Query: 1   MGGENDLKTWVSDQLMSLLGFSQPTIVQYMIGLSKQATSPADVVSKLVIDFSLPSSGETL 60
           MGGENDLKTWVSDQLMSLLGFSQPTIVQYMIGLSKQATSPADVV+KLVIDFSLPSSGETL
Sbjct: 1   MGGENDLKTWVSDQLMSLLGFSQPTIVQYMIGLSKQATSPADVVNKLVIDFSLPSSGETL 60

Query: 61  AFAEGIFSRVPRKQSSGLN----------------------------------------- 120
           AFAEGIFSRVPRKQSSGLN                                         
Sbjct: 61  AFAEGIFSRVPRKQSSGLNLYQKQEREAAMLARKQTTYALLDADDEDDVEDKGRSSDLKE 120

Query: 121 ----------------------ESALERENRQVKR--QASSSEDDDSESEEERLQDQRER 144
                                 ESALERENRQVKR  +ASSSED+ SESEEERL+DQRER
Sbjct: 121 TENRKKHFRRKNEYQEDEDDEKESALERENRQVKRRQRASSSEDESSESEEERLRDQRER 180

[Close]

BLAST of HG10008542 vs. ExPASy TrEMBL
Match: A0A6J1KTQ9 (pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498124 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 7.8e-50
Identity = 130/206 (63.11%), Postives = 137/206 (66.50%), Query Frame = 0


Query: 1   MGGENDLKTWVSDQLMSLLGFSQPTIVQYMIGLSKQATSPADVVSKLVIDFSLPSSGETL 60
           MGGEND+KTW+SDQLMSLLGFSQPTIVQYMIGLSKQA SPADVVSKLV+DF LPSS ETL
Sbjct: 1   MGGENDMKTWISDQLMSLLGFSQPTIVQYMIGLSKQAASPADVVSKLVVDFGLPSSNETL 60

Query: 61  AFAEGIFSRVPRKQSSGLN----------------------------------------- 120
           AFAEGIFSRVPRK+S+GLN                                         
Sbjct: 61  AFAEGIFSRVPRKKSTGLNLYQKQEREAAILARNQKKYTLLDADDEEVLEDKGGSGDPRE 120

Query: 121 ----------------------ESALERENRQVKRQASSSEDDDSESEEERLQDQREREQ 144
                                 ESALERENRQVKR+ SSSEDD SESEEER +DQREREQ
Sbjct: 121 TENRKKRFRKKNEYQEDEDDEEESALERENRQVKRRTSSSEDDGSESEEERQRDQREREQ 180

[Close]

BLAST of HG10008542 vs. ExPASy TrEMBL
Match: A0A6J1F0A9 (pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111440982 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 7.8e-50
Identity = 130/206 (63.11%), Postives = 137/206 (66.50%), Query Frame = 0


Query: 1   MGGENDLKTWVSDQLMSLLGFSQPTIVQYMIGLSKQATSPADVVSKLVIDFSLPSSGETL 60
           MGGEND+KTW+SDQLMSLLGFSQPTIVQYMIGLSKQA SPADVVSKLV+DF LPSS ETL
Sbjct: 1   MGGENDMKTWISDQLMSLLGFSQPTIVQYMIGLSKQAASPADVVSKLVVDFGLPSSNETL 60

Query: 61  AFAEGIFSRVPRKQSSGLN----------------------------------------- 120
           AFAEGIFSRVPRK+S+GLN                                         
Sbjct: 61  AFAEGIFSRVPRKKSTGLNLYQKQEREAAILARNQKKYTLLDADDEEVLEDKGGSGDPRE 120

Query: 121 ----------------------ESALERENRQVKRQASSSEDDDSESEEERLQDQREREQ 144
                                 ESALERENRQVKR+ SSSEDD SESEEER +DQREREQ
Sbjct: 121 TENRKKRFRKKNEYQEDEDDEEESALERENRQVKRRTSSSEDDGSESEEERQRDQREREQ 180

[Close]

BLAST of HG10008542 vs. TAIR 10
Match: AT2G35340.1 (helicase domain-containing protein )

HSP 1 Score: 108.6 bits (270), Expect = 4.2e-24
Identity = 86/206 (41.75%), Postives = 114/206 (55.34%), Query Frame = 0


Query: 3   GENDLKTWVSDQLMSLLGFSQPTIVQYMIGLSKQATSPADVVSKLV-IDFSLPSSGETLA 62
           G NDL TWVSD+LM LLGFSQ  +VQY+I ++KQ+ SP ++V +LV   FSL  SG+T A
Sbjct: 2   GSNDLNTWVSDKLMVLLGFSQTAVVQYLIAMAKQSKSPGELVRELVECGFSL--SGDTRA 61

Query: 63  FAEGIFSRVPRKQSSGLN-------ESAL----------------EREN----------- 122
           FAE I++R PRK + G+N       E+A+                E EN           
Sbjct: 62  FAEEIYARAPRK-TPGVNLYQQQEAEAAMLLKKQKTFSLLEADHDEDENNVKKQSASKTG 121

Query: 123 ------------------------------RQVKRQASSSEDDDSESEEERLQDQREREQ 144
                                         R V+R+ S  EDD +ESEEERL+DQRERE+
Sbjct: 122 KSDKGQKRFRKKSEQLEDDDDEVVIVREDKRNVRRKVSEDEDDGTESEEERLRDQREREE 181

[Close]

BLAST of HG10008542 vs. TAIR 10
Match: AT1G32490.1 (RNA helicase family protein )

HSP 1 Score: 106.3 bits (264), Expect = 2.1e-23
Identity = 78/203 (38.42%), Postives = 112/203 (55.17%), Query Frame = 0


Query: 5   NDLKTWVSDQLMSLLGFSQPTIVQYMIGLSKQATSPADVVSKLVIDFSLPSSGETLAFAE 64
           NDLKTWVSD+LM LLG+SQ  +V Y+I ++K+  SP ++V +LV D+   SSG+T +FAE
Sbjct: 4   NDLKTWVSDKLMMLLGYSQAAVVNYLIAMAKKTKSPTELVGELV-DYGFSSSGDTRSFAE 63

Query: 65  GIFSRVPRKQSSGLN--------------------------------------------- 124
            IF+RVPRK ++G+N                                             
Sbjct: 64  EIFARVPRK-TAGVNLYQKHEAEAAMLVRKQKTYALLDADDDEDEVVVEKKSSVSESRKS 123

Query: 125 -------------------ESALERENRQVKRQASSSEDDDSESEEERLQDQREREQLER 144
                              E A+  ++R V+R+  S EDD SESEEER++DQ+ERE+LE+
Sbjct: 124 DKGKKRFRKKSGQSDESDGEVAVREDSRHVRRKV-SEEDDGSESEEERVRDQKEREELEQ 183

[Close]

BLAST of HG10008542 vs. TAIR 10
Match: AT1G32490.2 (RNA helicase family protein )

HSP 1 Score: 106.3 bits (264), Expect = 2.1e-23
Identity = 78/203 (38.42%), Postives = 112/203 (55.17%), Query Frame = 0


Query: 5   NDLKTWVSDQLMSLLGFSQPTIVQYMIGLSKQATSPADVVSKLVIDFSLPSSGETLAFAE 64
           NDLKTWVSD+LM LLG+SQ  +V Y+I ++K+  SP ++V +LV D+   SSG+T +FAE
Sbjct: 4   NDLKTWVSDKLMMLLGYSQAAVVNYLIAMAKKTKSPTELVGELV-DYGFSSSGDTRSFAE 63

Query: 65  GIFSRVPRKQSSGLN--------------------------------------------- 124
            IF+RVPRK ++G+N                                             
Sbjct: 64  EIFARVPRK-TAGVNLYQKHEAEAAMLVRKQKTYALLDADDDEDEVVVEKKSSVSESRKS 123

Query: 125 -------------------ESALERENRQVKRQASSSEDDDSESEEERLQDQREREQLER 144
                              E A+  ++R V+R+  S EDD SESEEER++DQ+ERE+LE+
Sbjct: 124 DKGKKRFRKKSGQSDESDGEVAVREDSRHVRRKV-SEEDDGSESEEERVRDQKEREELEQ 183

The following BLAST results are available for this feature:

BLAST of HG10008542 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0057984.1	1.8e-53	67.48	pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 [Cucumis melo var. mak...	[more]
XP_008453258.1	1.8e-53	67.48	PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 [Cucumis me...	[more]
XP_038879655.1	4.5e-52	66.34	pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 [Benincasa hispida] >X...	[more]
XP_011660328.1	1.7e-51	66.35	pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 [Cucumis sativus] >KGN...	[more]
XP_023005006.1	1.6e-49	63.11	pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 isoform X1 [Cucurbita ...	[more]

BLAST of HG10008542 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4IJV4	6.0e-23	41.75	Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH6 OS=Arabidopsi...	[more]
Q8VY00	3.0e-22	38.42	Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 OS=Arabidopsis thalian...	[more]

BLAST of HG10008542 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BVU3	8.9e-54	67.48	pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 OS=Cucumis melo OX=365...	[more]
A0A5A7US39	8.9e-54	67.48	Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 OS=Cucumis melo var. m...	[more]
A0A0A0LUM2	8.3e-52	66.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G012660 PE=4 SV=1	[more]
A0A6J1KTQ9	7.8e-50	63.11	pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 isoform X1 OS=Cucurbit...	[more]
A0A6J1F0A9	7.8e-50	63.11	pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 isoform X1 OS=Cucurbit...	[more]

BLAST of HG10008542 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35340.1	4.2e-24	41.75	helicase domain-containing protein	[more]
AT1G32490.1	2.1e-23	38.42	RNA helicase family protein	[more]
AT1G32490.2	2.1e-23	38.42	RNA helicase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 80..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..145
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10008542.1	HG10008542.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0003724	RNA helicase activity