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HG10008540 (gene) Bottle gourd (Hangzhou Gourd) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCGACACAAGCGAATGATCCACGGCAGCCGTCGGCCGCGAAGCCTTTTGTTGCTCCGGCAGTGAATCCGCAAGATCTCACCGTCGATTATTCCGGCTTCATCGCCGTAGTTTTCGGGATCGCCGGTGTCATGTTCAGGGTATTTTCTGTTTCTTTTCGAGTACTCATTCGGTAACTTTGGCGATCTTACTTTTTACTCATTCCACACTCTTCGTTTTGGTTGAAATTGGTCAGTACAAGCTTAGTTCGTGGCTAGCCATCATATTTTGCGCCCAATCGCTTGCGAATATGAGGAATATGGAGAACGATCTCAAGCAGATTTCCATGGCCATGATGTGAGTTTTTCTTCCCTTCCCGACCTCTATTTCACTGTTACTTTACACAGATCAATAGGTGAATTTGAGTCTGTCTGAAATCTGAACATTCAAAATTCTGTCTAGACTTTTCCGTCGCTTTGTAGATGCAAGAAGTATGTTAGTAGCTAGGGTTCGAGCTAATTTAACCACCTACTGTATTGGGGATTATGATATTTTCGATAATCTCCACATGTTTAGAATCACGCACACACTTCAATCATTCAATCAATGTTTAAATTATTGAAATATTGTGAATCTTGGACCATACCATATGTTACTTTCCTTGTGCGGATGGCCTGACTTGGTTCTCATGTGTTAACTCAGGGTATTGGGTTGTGACATGTTAACACTGGTCATGTTTAAGAGATATAGTCTTTGGTTAGTTGTTTAATATCCTATAAGTTTCTAGATACCAAATTTTGCAAGGTTAGTAACTGTCTTGCTTTACTAGTTCATGAATATCAAAGTTGGCATGAACACGCCGTCATAAGAGAAGAGTGAGTATTTACAATCTTTTACACTAGCAATCGTGTTTTGTGATCTTTCAGATTCAGAATTGATTGCATCCTCAATACTTGTGATTTAGGAACCTTGATACGGATTGGATTCTATCATTGTAGTTTTAGTTTACCTCGTGTCAGCCTTAGACGTTGTATGCAAACAACGAACACTCCCTCTTGACATATTCTACTACCCATTTCATTTTTCCTTTGGTTTAAAAATACTACTTATTCTGGTTCACGTACTTTAGAAATGTTCATTTTGGTACTTGTACTTTTAACTTTGGTTTATTTTGGTCCTTTGAACTTTGAAAGAGTGAACCATTTTTGGCCCCTTCATTTTCGTTTTTATATAATTTTTAAGGGATCAAAATAGTCACTTTTTGAAAGTTCGAGGACCAAAATGAACCAAAGTTGAAAGTATAAGGGCCAAAATGAATATTTTGAAAGTAATAGACTAAAATGAATCAAAGATGAAAGTACAGGGACCAAAATGAACATTTTTTAAATACATGAACCAAAATGGACTAAAGCCAAAAGTATAGGGATAAAATAATATTTAAACATTTTCCTTTTTGTACTTGCTTCTTACCCTTTCTTTTATGTATGACTTTAGAGCATAAACTAGGTAACTTGCAAATTGGGAGTAACTATCATGAAAATTACTTTTATTGGGAACAGGAATCGGTGAATTGAAATAAAATTTGGATTGAGAACCTGCAGAAACAAGAAACTACAGTCCCATTACTTTCTTCTCAAGCCAACTCAAGTTTAAATGACTAAATAAATGTAACCTTCACCGCTTTCCACTCACTCTATTGTTTAAAAATCTCTCACTAGCAAACTCCTTAGCTAATGATACTAATACGCTCTTTGAGTTCTAATAATATTTCTTACATCTACGCTGCTAAAGTTTCTAACGGTTACTTGAGACTGCAGAGATTTAGGTTTGAGTGAATAATGAGAGTTCCATTTATTGATTGTTCTTCCGTTGATTCAAATTTTTGCTCCTCCAACCTGAGTTGTGGCATGGTAACAATGTCCCATGAGGCCAACTGACATGTGATACTACATCTCTTAGTTTCTCCTTTGACGACGGGTTAAGAATTTTAAGATAAATGAGAGATGGTAGTATGATTGTCTATAATGTTACCTAACAGTTTTGAGGACATAGGTGATTTTCATACATTTCAAACAATTGTTGAAAAATTATTATACAAAGATGTTGATGCATTCTATTTTTACCTATATTTATATAATCTAGGTAAAACTCAGTCTATACAGGCCATCTTGGGTTTGTTTTTTGAAGCCTCTAATCAAGTCAAGTCTAAGCCAATCATCTTGAATCATCTTGCTTGAATGATTTTTCTTTTTACATTATCAACATTTTAATACGATTCAATAGCATCAGTTTATACCCATTTTGTGGTTTTAACTCTTTTTTTTTGGGTCTCGAATCCAGGTTTGCTAGTATGGGATTAGTGACAAATTACTTGGGACCTGCACGACCAGGAACAAAAAGTTAA ATGTCGACACAAGCGAATGATCCACGGCAGCCGTCGGCCGCGAAGCCTTTTGTTGCTCCGGCAGTGAATCCGCAAGATCTCACCGTCGATTATTCCGGCTTCATCGCCGTAGTTTTCGGGATCGCCGGTGTCATGTTCAGGTACAAGCTTAGTTCGTGGCTAGCCATCATATTTTGCGCCCAATCGCTTGCGAATATGAGGAATATGGAGAACGATCTCAAGCAGATTTCCATGGCCATGATGTTTGCTAGTATGGGATTAGTGACAAATTACTTGGGACCTGCACGACCAGGAACAAAAAGTTAA ATGTCGACACAAGCGAATGATCCACGGCAGCCGTCGGCCGCGAAGCCTTTTGTTGCTCCGGCAGTGAATCCGCAAGATCTCACCGTCGATTATTCCGGCTTCATCGCCGTAGTTTTCGGGATCGCCGGTGTCATGTTCAGGTACAAGCTTAGTTCGTGGCTAGCCATCATATTTTGCGCCCAATCGCTTGCGAATATGAGGAATATGGAGAACGATCTCAAGCAGATTTCCATGGCCATGATGTTTGCTAGTATGGGATTAGTGACAAATTACTTGGGACCTGCACGACCAGGAACAAAAAGTTAA MSTQANDPRQPSAAKPFVAPAVNPQDLTVDYSGFIAVVFGIAGVMFRYKLSSWLAIIFCAQSLANMRNMENDLKQISMAMMFASMGLVTNYLGPARPGTKS Homology
BLAST of HG10008540 vs. NCBI nr
Match: XP_022933634.1 (protein Asterix-like [Cucurbita moschata] >XP_023007397.1 protein Asterix-like [Cucurbita maxima] >XP_023529496.1 protein Asterix-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 193.7 bits (491), Expect = 7.5e-46 Identity = 98/101 (97.03%), Postives = 99/101 (98.02%), Query Frame = 0
BLAST of HG10008540 vs. NCBI nr
Match: KAG6587575.1 (Protein Asterix, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 193.7 bits (491), Expect = 7.5e-46 Identity = 98/101 (97.03%), Postives = 99/101 (98.02%), Query Frame = 0
BLAST of HG10008540 vs. NCBI nr
Match: XP_038880376.1 (protein Asterix [Benincasa hispida]) HSP 1 Score: 193.4 bits (490), Expect = 9.8e-46 Identity = 98/101 (97.03%), Postives = 99/101 (98.02%), Query Frame = 0
BLAST of HG10008540 vs. NCBI nr
Match: XP_008453260.1 (PREDICTED: protein Asterix [Cucumis melo]) HSP 1 Score: 189.5 bits (480), Expect = 1.4e-44 Identity = 96/101 (95.05%), Postives = 97/101 (96.04%), Query Frame = 0
BLAST of HG10008540 vs. NCBI nr
Match: XP_004138191.1 (protein Asterix [Cucumis sativus] >KGN63717.1 hypothetical protein Csa_014204 [Cucumis sativus]) HSP 1 Score: 187.6 bits (475), Expect = 5.4e-44 Identity = 95/101 (94.06%), Postives = 96/101 (95.05%), Query Frame = 0
BLAST of HG10008540 vs. ExPASy Swiss-Prot
Match: Q9SD88 (Protein Asterix OS=Arabidopsis thaliana OX=3702 GN=At5g07960 PE=3 SV=1) HSP 1 Score: 159.5 bits (402), Expect = 2.1e-38 Identity = 77/99 (77.78%), Postives = 87/99 (87.88%), Query Frame = 0
BLAST of HG10008540 vs. ExPASy Swiss-Prot
Match: F8RT80 (PAT complex subunit Asterix OS=Gallus gallus OX=9031 GN=WDR83OS PE=2 SV=1) HSP 1 Score: 49.3 bits (116), Expect = 3.0e-05 Identity = 31/95 (32.63%), Postives = 50/95 (52.63%), Query Frame = 0
BLAST of HG10008540 vs. ExPASy Swiss-Prot
Match: Q9U516 (Protein Asterix OS=Manduca sexta OX=7130 PE=3 SV=1) HSP 1 Score: 49.3 bits (116), Expect = 3.0e-05 Identity = 30/95 (31.58%), Postives = 48/95 (50.53%), Query Frame = 0
BLAST of HG10008540 vs. ExPASy Swiss-Prot
Match: Q9Y284 (PAT complex subunit Asterix OS=Homo sapiens OX=9606 GN=WDR83OS PE=1 SV=1) HSP 1 Score: 48.1 bits (113), Expect = 6.7e-05 Identity = 34/104 (32.69%), Postives = 54/104 (51.92%), Query Frame = 0
BLAST of HG10008540 vs. ExPASy Swiss-Prot
Match: Q6ZWX0 (PAT complex subunit Asterix OS=Mus musculus OX=10090 GN=Wdr83os PE=3 SV=1) HSP 1 Score: 48.1 bits (113), Expect = 6.7e-05 Identity = 34/104 (32.69%), Postives = 54/104 (51.92%), Query Frame = 0
BLAST of HG10008540 vs. ExPASy TrEMBL
Match: A0A6J1KYK4 (protein Asterix-like OS=Cucurbita maxima OX=3661 GN=LOC111499903 PE=4 SV=1) HSP 1 Score: 193.7 bits (491), Expect = 3.6e-46 Identity = 98/101 (97.03%), Postives = 99/101 (98.02%), Query Frame = 0
BLAST of HG10008540 vs. ExPASy TrEMBL
Match: A0A6J1F0A5 (protein Asterix-like OS=Cucurbita moschata OX=3662 GN=LOC111440996 PE=4 SV=1) HSP 1 Score: 193.7 bits (491), Expect = 3.6e-46 Identity = 98/101 (97.03%), Postives = 99/101 (98.02%), Query Frame = 0
BLAST of HG10008540 vs. ExPASy TrEMBL
Match: A0A1S3BWL0 (protein Asterix OS=Cucumis melo OX=3656 GN=LOC103494034 PE=4 SV=1) HSP 1 Score: 189.5 bits (480), Expect = 6.8e-45 Identity = 96/101 (95.05%), Postives = 97/101 (96.04%), Query Frame = 0
BLAST of HG10008540 vs. ExPASy TrEMBL
Match: A0A0A0LSF0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G013160 PE=4 SV=1) HSP 1 Score: 187.6 bits (475), Expect = 2.6e-44 Identity = 95/101 (94.06%), Postives = 96/101 (95.05%), Query Frame = 0
BLAST of HG10008540 vs. ExPASy TrEMBL
Match: A0A6J1E5Z1 (protein Asterix-like OS=Cucurbita moschata OX=3662 GN=LOC111429753 PE=4 SV=1) HSP 1 Score: 186.4 bits (472), Expect = 5.8e-44 Identity = 94/101 (93.07%), Postives = 96/101 (95.05%), Query Frame = 0
BLAST of HG10008540 vs. TAIR 10
Match: AT5G07960.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0139 (InterPro:IPR005351); Has 193 Blast hits to 193 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). ) HSP 1 Score: 159.5 bits (402), Expect = 1.5e-39 Identity = 77/99 (77.78%), Postives = 87/99 (87.88%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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