HG10008490 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10008490
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr10: 23580014 .. 23580463 (+)
RNA-Seq ExpressionHG10008490
SyntenyHG10008490
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAAAACAAGAAACAAACACACAAAGACGAAGAGGGACCGAGCTCGAACGATAGCGAAGCGGTTTGAAGTCAAGAACCTGTCAATAAGGCAAAAACTTGGCCTCACAAAGAAGCTTGAAAAAACCTCAAAGCAAAAAATGGAGGTTTGTATCAAAAGAACTCTGCCTAAGATCAAATTTGGGATATCATTCATAATTCCAGACAGAATGGCTACAGAGATTGATGACAAGAAGAGGATAAGTGGATTACACCCACTGAGAATTACTAGAGTTCCATGTGGTGGGCCAATGGAGTTTCATGCCATTGTAAAAGAGGCTGAGAAAAGTTCAGCTCCATTGAAGAATCAGCAGCAGCAAGGCAAGCCACCAAATCCTAAAGCAGCATATCATAGGAGCTGCTTCAATGAGTGGCATCCTCAAGTGTTTCATTTCATATCTCATAATTAA

mRNA sequence

ATGGCCAAAACAAGAAACAAACACACAAAGACGAAGAGGGACCGAGCTCGAACGATAGCGAAGCGGTTTGAAGTCAAGAACCTGTCAATAAGGCAAAAACTTGGCCTCACAAAGAAGCTTGAAAAAACCTCAAAGCAAAAAATGGAGGTTTGTATCAAAAGAACTCTGCCTAAGATCAAATTTGGGATATCATTCATAATTCCAGACAGAATGGCTACAGAGATTGATGACAAGAAGAGGATAAGTGGATTACACCCACTGAGAATTACTAGAGTTCCATGTGGTGGGCCAATGGAGTTTCATGCCATTGTAAAAGAGGCTGAGAAAAGTTCAGCTCCATTGAAGAATCAGCAGCAGCAAGGCAAGCCACCAAATCCTAAAGCAGCATATCATAGGAGCTGCTTCAATGAGTGGCATCCTCAAGTGTTTCATTTCATATCTCATAATTAA

Coding sequence (CDS)

ATGGCCAAAACAAGAAACAAACACACAAAGACGAAGAGGGACCGAGCTCGAACGATAGCGAAGCGGTTTGAAGTCAAGAACCTGTCAATAAGGCAAAAACTTGGCCTCACAAAGAAGCTTGAAAAAACCTCAAAGCAAAAAATGGAGGTTTGTATCAAAAGAACTCTGCCTAAGATCAAATTTGGGATATCATTCATAATTCCAGACAGAATGGCTACAGAGATTGATGACAAGAAGAGGATAAGTGGATTACACCCACTGAGAATTACTAGAGTTCCATGTGGTGGGCCAATGGAGTTTCATGCCATTGTAAAAGAGGCTGAGAAAAGTTCAGCTCCATTGAAGAATCAGCAGCAGCAAGGCAAGCCACCAAATCCTAAAGCAGCATATCATAGGAGCTGCTTCAATGAGTGGCATCCTCAAGTGTTTCATTTCATATCTCATAATTAA

Protein sequence

MAKTRNKHTKTKRDRARTIAKRFEVKNLSIRQKLGLTKKLEKTSKQKMEVCIKRTLPKIKFGISFIIPDRMATEIDDKKRISGLHPLRITRVPCGGPMEFHAIVKEAEKSSAPLKNQQQQGKPPNPKAAYHRSCFNEWHPQVFHFISHN
Homology
BLAST of HG10008490 vs. NCBI nr
Match: KAG6589576.1 (hypothetical protein SDJN03_14999, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 226.9 bits (577), Expect = 1.2e-55
Identity = 119/147 (80.95%), Postives = 130/147 (88.44%), Query Frame = 0

Query: 1   MAKTRNKHTKTKRDRARTIAKRFEVKNLSIRQKLGLTKKLEKTSKQKMEVCIKRTLPKIK 60
           MAKTR KH+KTKR +AR IAK+F+VKNLSIRQKLGLT+K  K SK+ M   I+RTLP+ K
Sbjct: 1   MAKTRGKHSKTKRGQARAIAKQFKVKNLSIRQKLGLTEKPAKVSKEGMGFFIRRTLPR-K 60

Query: 61  FGISFIIPDRMATEIDDKKRISGLHPLRITRVPCGGPMEFHAIVKEAEKSSAPLKNQQQQ 120
           FGISF IPDRMATEI+DKKRISGLHPLRITRVP GGPMEFHA+VKEAEK SAPLKN QQQ
Sbjct: 61  FGISFTIPDRMATEINDKKRISGLHPLRITRVPSGGPMEFHAVVKEAEKGSAPLKN-QQQ 120

Query: 121 GKPPNPKAAYHRSCFNEWHPQVFHFIS 148
           G+PPNPKAAYHRS  NEWHPQVFHFIS
Sbjct: 121 GRPPNPKAAYHRSRLNEWHPQVFHFIS 145

BLAST of HG10008490 vs. NCBI nr
Match: KGN63749.1 (hypothetical protein Csa_013996 [Cucumis sativus])

HSP 1 Score: 219.9 bits (559), Expect = 1.4e-53
Identity = 120/150 (80.00%), Postives = 131/150 (87.33%), Query Frame = 0

Query: 1   MAKTRNKHTKT-KRDRARTIAKRFEVKNLSIRQKLGLTKKLEKTSKQKMEVCIKRTLPKI 60
           MAKTRNK+ K  KRDRARTIAKRF V+N + RQKL LT+KLE+TSK++MEV   R L +I
Sbjct: 1   MAKTRNKNIKAKKRDRARTIAKRFRVENFT-RQKLVLTEKLEETSKERMEV---RALHEI 60

Query: 61  KFGISFIIPDRMATEIDDKKRISGLHPLRITRVPCGGPMEFHAIVKEAEKSSAPLKNQQQ 120
           KFGISF IPDRMATEI DKKRISGLHPLRITRVP GGPMEFH IVKEAEK SAPLKN QQ
Sbjct: 61  KFGISFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKN-QQ 120

Query: 121 QGKPPNPKAAYHRSCFNEWHPQVFHFISHN 150
           +GKPPNPKAAYHRSC NEWHPQVFHFIS++
Sbjct: 121 KGKPPNPKAAYHRSCLNEWHPQVFHFISNS 145

BLAST of HG10008490 vs. NCBI nr
Match: TYK28377.1 (hypothetical protein E5676_scaffold629G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 203.0 bits (515), Expect = 1.8e-48
Identity = 111/150 (74.00%), Postives = 123/150 (82.00%), Query Frame = 0

Query: 1   MAKTRNKHTK-TKRDRARTIAKRFEVKNLSIRQKLGLTKKLEKTSKQKMEVCIKRTLPKI 60
           MAKTRNK+TK  KRD+ARTIAK+F V          L +KLE+ SK++MEV   RTL KI
Sbjct: 1   MAKTRNKNTKMKKRDQARTIAKQFRV----------LKEKLEEASKERMEV---RTLHKI 60

Query: 61  KFGISFIIPDRMATEIDDKKRISGLHPLRITRVPCGGPMEFHAIVKEAEKSSAPLKNQQQ 120
           KFGISF IPDRMATEI+DKK ISGL PLRITRVPCGGPMEFH IVKEAEK SAPLKN  +
Sbjct: 61  KFGISFTIPDRMATEINDKKSISGLRPLRITRVPCGGPMEFHEIVKEAEKGSAPLKN-HK 120

Query: 121 QGKPPNPKAAYHRSCFNEWHPQVFHFISHN 150
           +GKPPNPK AYHRSCFNEWHPQVFHFIS++
Sbjct: 121 KGKPPNPKTAYHRSCFNEWHPQVFHFISNS 136

BLAST of HG10008490 vs. NCBI nr
Match: KAA0058005.1 (hypothetical protein E6C27_scaffold274G003090 [Cucumis melo var. makuwa])

HSP 1 Score: 200.3 bits (508), Expect = 1.2e-47
Identity = 109/150 (72.67%), Postives = 122/150 (81.33%), Query Frame = 0

Query: 1   MAKTRNKHTK-TKRDRARTIAKRFEVKNLSIRQKLGLTKKLEKTSKQKMEVCIKRTLPKI 60
           MAKTRNK+TK  KRD+ARTIAKRF V          L +KLE+ SK++MEV   RT+ +I
Sbjct: 1   MAKTRNKNTKMKKRDQARTIAKRFRV----------LKEKLEEASKERMEV---RTVHQI 60

Query: 61  KFGISFIIPDRMATEIDDKKRISGLHPLRITRVPCGGPMEFHAIVKEAEKSSAPLKNQQQ 120
           KFGISF IPDRM TEI+DKK ISGL PLRITRVPCGGPMEFH IVKEAEK SAPLKN  +
Sbjct: 61  KFGISFTIPDRMTTEINDKKSISGLRPLRITRVPCGGPMEFHEIVKEAEKGSAPLKN-HK 120

Query: 121 QGKPPNPKAAYHRSCFNEWHPQVFHFISHN 150
           +GKPPNPK AYHRSCFNEWHPQVFHFIS++
Sbjct: 121 KGKPPNPKTAYHRSCFNEWHPQVFHFISNS 136

BLAST of HG10008490 vs. NCBI nr
Match: PON36990.1 (hypothetical protein PanWU01x14_323790 [Parasponia andersonii])

HSP 1 Score: 126.3 bits (316), Expect = 2.2e-25
Identity = 61/99 (61.62%), Postives = 72/99 (72.73%), Query Frame = 0

Query: 48  MEVCIKRTLPKIKFGISFIIPDRMATEIDDKKRISGLHPLRITRVPCGGPMEFHAIVKEA 107
           M+ C  R  PK KFGISFI+PDR+A EI DKK I G HP+RITR+P GGP EFH +V+EA
Sbjct: 1   MDFCALRAQPK-KFGISFIVPDRLAVEISDKKTIVGNHPMRITRIPSGGPTEFHRVVEEA 60

Query: 108 EKSSAPLK--NQQQQGKPPNPKAAYHRSCFNEWHPQVFH 145
           EK S PLK  N+      PNPK AYHRS  N+WHP+VF+
Sbjct: 61  EKESRPLKKYNENVMATRPNPKKAYHRSHMNDWHPKVFY 98

BLAST of HG10008490 vs. ExPASy TrEMBL
Match: A0A0A0LRV9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014460 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 7.0e-54
Identity = 120/150 (80.00%), Postives = 131/150 (87.33%), Query Frame = 0

Query: 1   MAKTRNKHTKT-KRDRARTIAKRFEVKNLSIRQKLGLTKKLEKTSKQKMEVCIKRTLPKI 60
           MAKTRNK+ K  KRDRARTIAKRF V+N + RQKL LT+KLE+TSK++MEV   R L +I
Sbjct: 1   MAKTRNKNIKAKKRDRARTIAKRFRVENFT-RQKLVLTEKLEETSKERMEV---RALHEI 60

Query: 61  KFGISFIIPDRMATEIDDKKRISGLHPLRITRVPCGGPMEFHAIVKEAEKSSAPLKNQQQ 120
           KFGISF IPDRMATEI DKKRISGLHPLRITRVP GGPMEFH IVKEAEK SAPLKN QQ
Sbjct: 61  KFGISFTIPDRMATEISDKKRISGLHPLRITRVPYGGPMEFHEIVKEAEKGSAPLKN-QQ 120

Query: 121 QGKPPNPKAAYHRSCFNEWHPQVFHFISHN 150
           +GKPPNPKAAYHRSC NEWHPQVFHFIS++
Sbjct: 121 KGKPPNPKAAYHRSCLNEWHPQVFHFISNS 145

BLAST of HG10008490 vs. ExPASy TrEMBL
Match: A0A5D3DX07 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G00030 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 8.8e-49
Identity = 111/150 (74.00%), Postives = 123/150 (82.00%), Query Frame = 0

Query: 1   MAKTRNKHTK-TKRDRARTIAKRFEVKNLSIRQKLGLTKKLEKTSKQKMEVCIKRTLPKI 60
           MAKTRNK+TK  KRD+ARTIAK+F V          L +KLE+ SK++MEV   RTL KI
Sbjct: 1   MAKTRNKNTKMKKRDQARTIAKQFRV----------LKEKLEEASKERMEV---RTLHKI 60

Query: 61  KFGISFIIPDRMATEIDDKKRISGLHPLRITRVPCGGPMEFHAIVKEAEKSSAPLKNQQQ 120
           KFGISF IPDRMATEI+DKK ISGL PLRITRVPCGGPMEFH IVKEAEK SAPLKN  +
Sbjct: 61  KFGISFTIPDRMATEINDKKSISGLRPLRITRVPCGGPMEFHEIVKEAEKGSAPLKN-HK 120

Query: 121 QGKPPNPKAAYHRSCFNEWHPQVFHFISHN 150
           +GKPPNPK AYHRSCFNEWHPQVFHFIS++
Sbjct: 121 KGKPPNPKTAYHRSCFNEWHPQVFHFISNS 136

BLAST of HG10008490 vs. ExPASy TrEMBL
Match: A0A5A7UWL1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G003090 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 5.7e-48
Identity = 109/150 (72.67%), Postives = 122/150 (81.33%), Query Frame = 0

Query: 1   MAKTRNKHTK-TKRDRARTIAKRFEVKNLSIRQKLGLTKKLEKTSKQKMEVCIKRTLPKI 60
           MAKTRNK+TK  KRD+ARTIAKRF V          L +KLE+ SK++MEV   RT+ +I
Sbjct: 1   MAKTRNKNTKMKKRDQARTIAKRFRV----------LKEKLEEASKERMEV---RTVHQI 60

Query: 61  KFGISFIIPDRMATEIDDKKRISGLHPLRITRVPCGGPMEFHAIVKEAEKSSAPLKNQQQ 120
           KFGISF IPDRM TEI+DKK ISGL PLRITRVPCGGPMEFH IVKEAEK SAPLKN  +
Sbjct: 61  KFGISFTIPDRMTTEINDKKSISGLRPLRITRVPCGGPMEFHEIVKEAEKGSAPLKN-HK 120

Query: 121 QGKPPNPKAAYHRSCFNEWHPQVFHFISHN 150
           +GKPPNPK AYHRSCFNEWHPQVFHFIS++
Sbjct: 121 KGKPPNPKTAYHRSCFNEWHPQVFHFISNS 136

BLAST of HG10008490 vs. ExPASy TrEMBL
Match: A0A2P5AKC8 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_323790 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.0e-25
Identity = 61/99 (61.62%), Postives = 72/99 (72.73%), Query Frame = 0

Query: 48  MEVCIKRTLPKIKFGISFIIPDRMATEIDDKKRISGLHPLRITRVPCGGPMEFHAIVKEA 107
           M+ C  R  PK KFGISFI+PDR+A EI DKK I G HP+RITR+P GGP EFH +V+EA
Sbjct: 1   MDFCALRAQPK-KFGISFIVPDRLAVEISDKKTIVGNHPMRITRIPSGGPTEFHRVVEEA 60

Query: 108 EKSSAPLK--NQQQQGKPPNPKAAYHRSCFNEWHPQVFH 145
           EK S PLK  N+      PNPK AYHRS  N+WHP+VF+
Sbjct: 61  EKESRPLKKYNENVMATRPNPKKAYHRSHMNDWHPKVFY 98

BLAST of HG10008490 vs. ExPASy TrEMBL
Match: A0A2P5F4J0 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_115550 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 3.0e-25
Identity = 60/99 (60.61%), Postives = 72/99 (72.73%), Query Frame = 0

Query: 48  MEVCIKRTLPKIKFGISFIIPDRMATEIDDKKRISGLHPLRITRVPCGGPMEFHAIVKEA 107
           M+ C  R  PK KFGISFI+PDR+A EI DKK I G HP+RITR+P GGP EFH +V+EA
Sbjct: 1   MDFCALRAQPK-KFGISFIVPDRLAVEISDKKTIVGKHPMRITRIPLGGPTEFHRVVEEA 60

Query: 108 EKSSAPLK--NQQQQGKPPNPKAAYHRSCFNEWHPQVFH 145
           EK S PLK  ++      PNPK AYHRS  N+WHP+VF+
Sbjct: 61  EKESRPLKKYHENVMATGPNPKKAYHRSHMNDWHPKVFY 98

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6589576.11.2e-5580.95hypothetical protein SDJN03_14999, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN63749.11.4e-5380.00hypothetical protein Csa_013996 [Cucumis sativus][more]
TYK28377.11.8e-4874.00hypothetical protein E5676_scaffold629G00030 [Cucumis melo var. makuwa][more]
KAA0058005.11.2e-4772.67hypothetical protein E6C27_scaffold274G003090 [Cucumis melo var. makuwa][more]
PON36990.12.2e-2561.62hypothetical protein PanWU01x14_323790 [Parasponia andersonii][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LRV97.0e-5480.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014460 PE=4 SV=1[more]
A0A5D3DX078.8e-4974.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UWL15.7e-4872.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A2P5AKC81.0e-2561.62Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_323790 PE... [more]
A0A2P5F4J03.0e-2560.61Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_115550 PE=4 SV... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 110..130

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10008490.1HG10008490.1mRNA