HG10008460 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10008460
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	ATP-dependent helicase/nuclease subunit A isoform 1
Location	Chr10: 23341506 .. 23341855 (+)
RNA-Seq Expression	HG10008460
Synteny	HG10008460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCAGCGGTTCTCGTAAATGGGCTTATATGCGGATCATCGCCGGCACCATCGTGGGCGGCGTTCTTGGCTTCTACGTTATGCACCGCGTTGAACTTGGCTATAAGGTAAGCCCACTTCTCTTCAATTTGAGCTCTCTGATCATCTCTGGGCGAATCCCTTCGATGATTTTTTTTTTCTTTTGAAGGTTATATGTGCTATGATTGCGGATTTCTTTTATTTTCGTTTCGTTTTTGTTAATGTTTGCTTTTCGGGGCTGATGCAGGAGAAGATGAAAGAGAGGTTAAAACAATACGAGAACGAACTGAAGAAGAAAGAGCAAATGAAAGAACTTGAGGACTCGCTATAG

mRNA sequence

ATGGTCAGCGGTTCTCGTAAATGGGCTTATATGCGGATCATCGCCGGCACCATCGTGGGCGGCGTTCTTGGCTTCTACGTTATGCACCGCGTTGAACTTGGCTATAAGGAGAAGATGAAAGAGAGGTTAAAACAATACGAGAACGAACTGAAGAAGAAAGAGCAAATGAAAGAACTTGAGGACTCGCTATAG

Coding sequence (CDS)

ATGGTCAGCGGTTCTCGTAAATGGGCTTATATGCGGATCATCGCCGGCACCATCGTGGGCGGCGTTCTTGGCTTCTACGTTATGCACCGCGTTGAACTTGGCTATAAGGAGAAGATGAAAGAGAGGTTAAAACAATACGAGAACGAACTGAAGAAGAAAGAGCAAATGAAAGAACTTGAGGACTCGCTATAG

Protein sequence

MVSGSRKWAYMRIIAGTIVGGVLGFYVMHRVELGYKEKMKERLKQYENELKKKEQMKELEDSL

Homology

[Close]

BLAST of HG10008460 vs. NCBI nr
Match: XP_038882309.1 (uncharacterized protein LOC120073547 [Benincasa hispida])

HSP 1 Score: 115.5 bits (288), Expect = 1.6e-22
Identity = 60/63 (95.24%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 1  MVSGSRKWAYMRIIAGTIVGGVLGFYVMHRVELGYKEKMKERLKQYENELKKKEQMKELE 60
          M+  SRKWAYMRIIAGTIVGGVLGFYVMHRVELGYKEKMKERLKQYENELKKKEQMKELE
Sbjct: 1  MIGSSRKWAYMRIIAGTIVGGVLGFYVMHRVELGYKEKMKERLKQYENELKKKEQMKELE 60

Query: 61 DSL 64
          DSL
Sbjct: 61 DSL 63

[Close]

BLAST of HG10008460 vs. NCBI nr
Match: XP_004138234.1 (uncharacterized protein LOC101217575 [Cucumis sativus])

HSP 1 Score: 111.3 bits (277), Expect = 3.0e-21
Identity = 57/63 (90.48%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 1  MVSGSRKWAYMRIIAGTIVGGVLGFYVMHRVELGYKEKMKERLKQYENELKKKEQMKELE 60
          MV  SRKWAY+RII GT+VGGVLGFYVMHRVE+GYKEKMKERLKQYENELKKKEQMKELE
Sbjct: 1  MVGSSRKWAYIRIITGTVVGGVLGFYVMHRVEVGYKEKMKERLKQYENELKKKEQMKELE 60

Query: 61 DSL 64
          DSL
Sbjct: 61 DSL 63

[Close]

BLAST of HG10008460 vs. NCBI nr
Match: KGN63809.2 (hypothetical protein Csa_013239 [Cucumis sativus])

HSP 1 Score: 111.3 bits (277), Expect = 3.0e-21
Identity = 57/63 (90.48%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 1  MVSGSRKWAYMRIIAGTIVGGVLGFYVMHRVELGYKEKMKERLKQYENELKKKEQMKELE 60
          MV  SRKWAY+RII GT+VGGVLGFYVMHRVE+GYKEKMKERLKQYENELKKKEQMKELE
Sbjct: 1  MVGSSRKWAYIRIITGTVVGGVLGFYVMHRVEVGYKEKMKERLKQYENELKKKEQMKELE 60

Query: 61 DSL 64
          DSL
Sbjct: 61 DSL 63

[Close]

BLAST of HG10008460 vs. NCBI nr
Match: KAA0058058.1 (ATP-dependent helicase/nuclease subunit A isoform 1 [Cucumis melo var. makuwa] >TYK28404.1 ATP-dependent helicase/nuclease subunit A isoform 1 [Cucumis melo var. makuwa])

HSP 1 Score: 110.9 bits (276), Expect = 4.0e-21
Identity = 58/63 (92.06%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 1  MVSGSRKWAYMRIIAGTIVGGVLGFYVMHRVELGYKEKMKERLKQYENELKKKEQMKELE 60
          MV  SRKWAY RIIAGTIVGGVLGFYVMHRVE+GYKEKMKERLKQYENELKKKE+MKELE
Sbjct: 1  MVGSSRKWAYTRIIAGTIVGGVLGFYVMHRVEVGYKEKMKERLKQYENELKKKEKMKELE 60

Query: 61 DSL 64
          DSL
Sbjct: 61 DSL 63

[Close]

BLAST of HG10008460 vs. NCBI nr
Match: XP_008453375.1 (PREDICTED: uncharacterized protein LOC103494113 [Cucumis melo] >XP_008453376.1 PREDICTED: uncharacterized protein LOC103494113 [Cucumis melo])

HSP 1 Score: 110.9 bits (276), Expect = 4.0e-21
Identity = 58/63 (92.06%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 1  MVSGSRKWAYMRIIAGTIVGGVLGFYVMHRVELGYKEKMKERLKQYENELKKKEQMKELE 60
          MV  SRKWAY RIIAGTIVGGVLGFYVMHRVE+GYKEKMKERLKQYENELKKKE+MKELE
Sbjct: 31 MVGSSRKWAYTRIIAGTIVGGVLGFYVMHRVEVGYKEKMKERLKQYENELKKKEKMKELE 90

Query: 61 DSL 64
          DSL
Sbjct: 91 DSL 93

[Close]

BLAST of HG10008460 vs. ExPASy TrEMBL
Match: A0A1S3BW37 (uncharacterized protein LOC103494113 OS=Cucumis melo OX=3656 GN=LOC103494113 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.9e-21
Identity = 58/63 (92.06%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 1  MVSGSRKWAYMRIIAGTIVGGVLGFYVMHRVELGYKEKMKERLKQYENELKKKEQMKELE 60
          MV  SRKWAY RIIAGTIVGGVLGFYVMHRVE+GYKEKMKERLKQYENELKKKE+MKELE
Sbjct: 31 MVGSSRKWAYTRIIAGTIVGGVLGFYVMHRVEVGYKEKMKERLKQYENELKKKEKMKELE 90

Query: 61 DSL 64
          DSL
Sbjct: 91 DSL 93

[Close]

BLAST of HG10008460 vs. ExPASy TrEMBL
Match: A0A5A7USD3 (ATP-dependent helicase/nuclease subunit A isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G00320 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.9e-21
Identity = 58/63 (92.06%), Postives = 60/63 (95.24%), Query Frame = 0


Query: 1  MVSGSRKWAYMRIIAGTIVGGVLGFYVMHRVELGYKEKMKERLKQYENELKKKEQMKELE 60
          MV  SRKWAY RIIAGTIVGGVLGFYVMHRVE+GYKEKMKERLKQYENELKKKE+MKELE
Sbjct: 1  MVGSSRKWAYTRIIAGTIVGGVLGFYVMHRVEVGYKEKMKERLKQYENELKKKEKMKELE 60

Query: 61 DSL 64
          DSL
Sbjct: 61 DSL 63

[Close]

BLAST of HG10008460 vs. ExPASy TrEMBL
Match: A0A6J1E2A1 (uncharacterized protein LOC111430128 OS=Cucurbita moschata OX=3662 GN=LOC111430128 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 8.1e-20
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 1  MVSGSRKWAYMRIIAGTIVGGVLGFYVMHRVELGYKEKMKERLKQYENELKKKEQMKELE 60
          M+  SR WAYMRIIAGTIVGGVLGFYVMHRVE+GYKEKMKERL+QYE ELKKKEQMKELE
Sbjct: 1  MMGSSRSWAYMRIIAGTIVGGVLGFYVMHRVEVGYKEKMKERLRQYEIELKKKEQMKELE 60

Query: 61 DS 63
          DS
Sbjct: 61 DS 62

[Close]

BLAST of HG10008460 vs. ExPASy TrEMBL
Match: A0A6J1JJ44 (uncharacterized protein LOC111484905 OS=Cucurbita maxima OX=3661 GN=LOC111484905 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.1e-19
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 1   MVSGSRKWAYMRIIAGTIVGGVLGFYVMHRVELGYKEKMKERLKQYENELKKKEQMKELE 60
           M+  SR WAYMRIIAGTIVGGVLGFYVMHRVE+GYKEKMKERL+QYE ELKKKEQMKELE
Sbjct: 45  MMGSSRTWAYMRIIAGTIVGGVLGFYVMHRVEVGYKEKMKERLRQYEIELKKKEQMKELE 104

Query: 61  DS 63
           DS
Sbjct: 105 DS 106

[Close]

BLAST of HG10008460 vs. ExPASy TrEMBL
Match: A0A6J1BYI4 (uncharacterized protein LOC111006898 OS=Momordica charantia OX=3673 GN=LOC111006898 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.8e-19
Identity = 54/63 (85.71%), Postives = 58/63 (92.06%), Query Frame = 0


Query: 1  MVSGSRKWAYMRIIAGTIVGGVLGFYVMHRVELGYKEKMKERLKQYENELKKKEQMKELE 60
          MV   RKWAY+RII GTIVGGVLGFYVMHRVE+GYKEK+KERL+QYE ELKKKEQMKELE
Sbjct: 1  MVGNYRKWAYVRIITGTIVGGVLGFYVMHRVEVGYKEKVKERLRQYEEELKKKEQMKELE 60

Query: 61 DSL 64
          DSL
Sbjct: 61 DSL 63

[Close]

BLAST of HG10008460 vs. TAIR 10
Match: AT3G18510.1 (unknown protein; Has 15 Blast hits to 15 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 66.2 bits (160), Expect = 1.0e-11
Identity = 31/59 (52.54%), Postives = 44/59 (74.58%), Query Frame = 0


Query: 1  MVSGSRKWAYMRIIAGTIVGGVLGFYVMHRVELGYKEKMKERLKQYENELKKKEQMKEL 60
          M   S  W Y RIIAGT++GG LGFYVMHR+E+ YK +M+E L QYE +++K+++ + L
Sbjct: 1  MALSSMTWGYARIIAGTLLGGALGFYVMHRIEVSYKMRMEEALNQYEKDMQKRQEEENL 59

The following BLAST results are available for this feature:

BLAST of HG10008460 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882309.1	1.6e-22	95.24	uncharacterized protein LOC120073547 [Benincasa hispida]	[more]
XP_004138234.1	3.0e-21	90.48	uncharacterized protein LOC101217575 [Cucumis sativus]	[more]
KGN63809.2	3.0e-21	90.48	hypothetical protein Csa_013239 [Cucumis sativus]	[more]
KAA0058058.1	4.0e-21	92.06	ATP-dependent helicase/nuclease subunit A isoform 1 [Cucumis melo var. makuwa] >...	[more]
XP_008453375.1	4.0e-21	92.06	PREDICTED: uncharacterized protein LOC103494113 [Cucumis melo] >XP_008453376.1 P...	[more]

BLAST of HG10008460 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10008460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BW37	1.9e-21	92.06	uncharacterized protein LOC103494113 OS=Cucumis melo OX=3656 GN=LOC103494113 PE=...	[more]
A0A5A7USD3	1.9e-21	92.06	ATP-dependent helicase/nuclease subunit A isoform 1 OS=Cucumis melo var. makuwa ...	[more]
A0A6J1E2A1	8.1e-20	88.71	uncharacterized protein LOC111430128 OS=Cucurbita moschata OX=3662 GN=LOC1114301...	[more]
A0A6J1JJ44	1.1e-19	88.71	uncharacterized protein LOC111484905 OS=Cucurbita maxima OX=3661 GN=LOC111484905...	[more]
A0A6J1BYI4	1.8e-19	85.71	uncharacterized protein LOC111006898 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]

BLAST of HG10008460 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18510.1	1.0e-11	52.54	unknown protein; Has 15 Blast hits to 15 proteins in 9 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 36..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10008460.1	HG10008460.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004386	helicase activity