HG10008449 (gene) Bottle gourd (Hangzhou Gourd) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATGCCGAGTTCTTCGCAAAGGCTGCAGTGAGAGCTGCTCAATCCGACCCTGTCTTCAATGGATCAAATCCCCCCAATCCCAAGCCAACGCCACTTTCTTCCTCGCCAAATTCTACGGCCGAGCTGGCCTTGTTAACCTCATCAATGCCGGCCCCGACCATCTCCGCCCAGGTTCTTTTACCTATTTCTACTCTGTTTTCGATTACTCTGTTTCAATTACTTATGGTGGGTTTTTCTTTTGTGGGTCCTTCAGCTATTTTTAAATCTTTGCTTTTCGAGGCGTGTGGCCGGATTGTGAATCCCATTTTTGGGTCCGCTGGATTGTTGTGGTCTGGGAGCTGGCAGCTCTGTCAGGACGCCGTCGAAGCTGTTCTGAAAGGCGCGCCGATTCTGCCGGTTTCTTCCGAGACGGCGGCGTCGCACATGGGTCCACCCTTGAAAGGCTGTGACATCCGTCACGTCTCCAAACAACAAGGCTCCGTCTCCGATTCCGCACTTAGAAAGATCAAGACGCGGCGGCGGTTCAAACGCTCGGCGATGGCGGCCACCAAGCCGAAGCCGAAGGAGGAGGAGGCAGCGGTGGTGCCCGGGTTTAAATTCGAGGACCCGACCCGGATGGTATCGGAGCCCCAGTGTTTGAAGTTTGAGTTGGATAATTGGGAGGGTCGTGAGTCGCCGGAAAAGGACTGCGGCAGCGACGACACCGAGTGCTTGTCGGTGGAGACTGTGGAGGCTTCTTCGGTGGGCCAGGGTGGTGACGTGGAATTGGAACTTACCTTGGGGTTTGGGTACAGTTGGATGCTGACGTGA ATGGATGCCGAGTTCTTCGCAAAGGCTGCAGTGAGAGCTGCTCAATCCGACCCTGTCTTCAATGGATCAAATCCCCCCAATCCCAAGCCAACGCCACTTTCTTCCTCGCCAAATTCTACGGCCGAGCTGGCCTTGTTAACCTCATCAATGCCGGCCCCGACCATCTCCGCCCAGGTTCTTTTACCTATTTCTACTCTGTTTTCGATTACTCTGTTTCAATTACTTATGGTGGGTTTTTCTTTTGTGGGTCCTTCAGCTATTTTTAAATCTTTGCTTTTCGAGGCGTGTGGCCGGATTGTGAATCCCATTTTTGGGTCCGCTGGATTGTTGTGGTCTGGGAGCTGGCAGCTCTGTCAGGACGCCGTCGAAGCTGTTCTGAAAGGCGCGCCGATTCTGCCGGTTTCTTCCGAGACGGCGGCGTCGCACATGGGTCCACCCTTGAAAGGCTGTGACATCCGTCACGTCTCCAAACAACAAGGCTCCGTCTCCGATTCCGCACTTAGAAAGATCAAGACGCGGCGGCGGTTCAAACGCTCGGCGATGGCGGCCACCAAGCCGAAGCCGAAGGAGGAGGAGGCAGCGGTGGTGCCCGGGTTTAAATTCGAGGACCCGACCCGGATGGTATCGGAGCCCCAGTGTTTGAAGTTTGAGTTGGATAATTGGGAGGGTCGTGAGTCGCCGGAAAAGGACTGCGGCAGCGACGACACCGAGTGCTTGTCGGTGGAGACTGTGGAGGCTTCTTCGGTGGGCCAGGGTGGTGACGTGGAATTGGAACTTACCTTGGGGTTTGGGTACAGTTGGATGCTGACGTGA ATGGATGCCGAGTTCTTCGCAAAGGCTGCAGTGAGAGCTGCTCAATCCGACCCTGTCTTCAATGGATCAAATCCCCCCAATCCCAAGCCAACGCCACTTTCTTCCTCGCCAAATTCTACGGCCGAGCTGGCCTTGTTAACCTCATCAATGCCGGCCCCGACCATCTCCGCCCAGGTTCTTTTACCTATTTCTACTCTGTTTTCGATTACTCTGTTTCAATTACTTATGGTGGGTTTTTCTTTTGTGGGTCCTTCAGCTATTTTTAAATCTTTGCTTTTCGAGGCGTGTGGCCGGATTGTGAATCCCATTTTTGGGTCCGCTGGATTGTTGTGGTCTGGGAGCTGGCAGCTCTGTCAGGACGCCGTCGAAGCTGTTCTGAAAGGCGCGCCGATTCTGCCGGTTTCTTCCGAGACGGCGGCGTCGCACATGGGTCCACCCTTGAAAGGCTGTGACATCCGTCACGTCTCCAAACAACAAGGCTCCGTCTCCGATTCCGCACTTAGAAAGATCAAGACGCGGCGGCGGTTCAAACGCTCGGCGATGGCGGCCACCAAGCCGAAGCCGAAGGAGGAGGAGGCAGCGGTGGTGCCCGGGTTTAAATTCGAGGACCCGACCCGGATGGTATCGGAGCCCCAGTGTTTGAAGTTTGAGTTGGATAATTGGGAGGGTCGTGAGTCGCCGGAAAAGGACTGCGGCAGCGACGACACCGAGTGCTTGTCGGTGGAGACTGTGGAGGCTTCTTCGGTGGGCCAGGGTGGTGACGTGGAATTGGAACTTACCTTGGGGTTTGGGTACAGTTGGATGCTGACGTGA MDAEFFAKAAVRAAQSDPVFNGSNPPNPKPTPLSSSPNSTAELALLTSSMPAPTISAQVLLPISTLFSITLFQLLMVGFSFVGPSAIFKSLLFEACGRIVNPIFGSAGLLWSGSWQLCQDAVEAVLKGAPILPVSSETAASHMGPPLKGCDIRHVSKQQGSVSDSALRKIKTRRRFKRSAMAATKPKPKEEEAAVVPGFKFEDPTRMVSEPQCLKFELDNWEGRESPEKDCGSDDTECLSVETVEASSVGQGGDVELELTLGFGYSWMLT Homology
BLAST of HG10008449 vs. NCBI nr
Match: KAG7021607.1 (LOB domain-containing protein 41, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 353.6 bits (906), Expect = 1.5e-93 Identity = 202/269 (75.09%), Postives = 215/269 (79.93%), Query Frame = 0
BLAST of HG10008449 vs. NCBI nr
Match: XP_038898929.1 (LOB domain-containing protein 41-like [Benincasa hispida]) HSP 1 Score: 327.8 bits (839), Expect = 8.9e-86 Identity = 171/200 (85.50%), Postives = 177/200 (88.50%), Query Frame = 0
BLAST of HG10008449 vs. NCBI nr
Match: XP_004138241.2 (LOB domain-containing protein 41 [Cucumis sativus] >KGN63823.2 hypothetical protein Csa_013440 [Cucumis sativus]) HSP 1 Score: 310.1 bits (793), Expect = 1.9e-80 Identity = 163/200 (81.50%), Postives = 171/200 (85.50%), Query Frame = 0
BLAST of HG10008449 vs. NCBI nr
Match: XP_008453391.1 (PREDICTED: LOB domain-containing protein 41-like [Cucumis melo] >KAA0058073.1 LOB domain-containing protein 41-like [Cucumis melo var. makuwa] >TYK28425.1 LOB domain-containing protein 41-like [Cucumis melo var. makuwa]) HSP 1 Score: 295.8 bits (756), Expect = 3.7e-76 Identity = 161/201 (80.10%), Postives = 169/201 (84.08%), Query Frame = 0
BLAST of HG10008449 vs. NCBI nr
Match: XP_023531745.1 (LOB domain-containing protein 40-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 271.9 bits (694), Expect = 5.8e-69 Identity = 146/192 (76.04%), Postives = 159/192 (82.81%), Query Frame = 0
BLAST of HG10008449 vs. ExPASy Swiss-Prot
Match: Q9M886 (LOB domain-containing protein 41 OS=Arabidopsis thaliana OX=3702 GN=LBD41 PE=2 SV=1) HSP 1 Score: 114.0 bits (284), Expect = 2.6e-24 Identity = 77/196 (39.29%), Postives = 109/196 (55.61%), Query Frame = 0
BLAST of HG10008449 vs. ExPASy Swiss-Prot
Match: Q9ZW96 (LOB domain-containing protein 40 OS=Arabidopsis thaliana OX=3702 GN=LBD40 PE=2 SV=1) HSP 1 Score: 105.5 bits (262), Expect = 9.4e-22 Identity = 60/133 (45.11%), Postives = 80/133 (60.15%), Query Frame = 0
BLAST of HG10008449 vs. ExPASy Swiss-Prot
Match: Q9CA30 (LOB domain-containing protein 42 OS=Arabidopsis thaliana OX=3702 GN=LBD42 PE=1 SV=1) HSP 1 Score: 91.7 bits (226), Expect = 1.4e-17 Identity = 57/122 (46.72%), Postives = 76/122 (62.30%), Query Frame = 0
BLAST of HG10008449 vs. ExPASy Swiss-Prot
Match: Q9SN23 (LOB domain-containing protein 38 OS=Arabidopsis thaliana OX=3702 GN=LBD38 PE=1 SV=1) HSP 1 Score: 72.8 bits (177), Expect = 6.7e-12 Identity = 29/49 (59.18%), Postives = 40/49 (81.63%), Query Frame = 0
BLAST of HG10008449 vs. ExPASy Swiss-Prot
Match: Q9FN11 (LOB domain-containing protein 37 OS=Arabidopsis thaliana OX=3702 GN=LBD37 PE=2 SV=1) HSP 1 Score: 72.0 bits (175), Expect = 1.2e-11 Identity = 28/49 (57.14%), Postives = 40/49 (81.63%), Query Frame = 0
BLAST of HG10008449 vs. ExPASy TrEMBL
Match: A0A0A0LPS5 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G023060 PE=3 SV=1) HSP 1 Score: 310.1 bits (793), Expect = 9.3e-81 Identity = 163/200 (81.50%), Postives = 171/200 (85.50%), Query Frame = 0
BLAST of HG10008449 vs. ExPASy TrEMBL
Match: A0A5A7UQD2 (LOB domain-containing protein 41-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G00550 PE=3 SV=1) HSP 1 Score: 295.8 bits (756), Expect = 1.8e-76 Identity = 161/201 (80.10%), Postives = 169/201 (84.08%), Query Frame = 0
BLAST of HG10008449 vs. ExPASy TrEMBL
Match: A0A1S3BXA9 (LOB domain-containing protein 41-like OS=Cucumis melo OX=3656 GN=LOC103494123 PE=3 SV=1) HSP 1 Score: 295.8 bits (756), Expect = 1.8e-76 Identity = 161/201 (80.10%), Postives = 169/201 (84.08%), Query Frame = 0
BLAST of HG10008449 vs. ExPASy TrEMBL
Match: A0A6J1F4A2 (LOB domain-containing protein 40-like OS=Cucurbita moschata OX=3662 GN=LOC111440342 PE=3 SV=1) HSP 1 Score: 267.7 bits (683), Expect = 5.3e-68 Identity = 147/194 (75.77%), Postives = 159/194 (81.96%), Query Frame = 0
BLAST of HG10008449 vs. ExPASy TrEMBL
Match: A0A6J1E692 (LOB domain-containing protein 41-like OS=Cucurbita moschata OX=3662 GN=LOC111429817 PE=3 SV=1) HSP 1 Score: 259.2 bits (661), Expect = 1.9e-65 Identity = 144/200 (72.00%), Postives = 154/200 (77.00%), Query Frame = 0
BLAST of HG10008449 vs. TAIR 10
Match: AT3G02550.1 (LOB domain-containing protein 41 ) HSP 1 Score: 114.0 bits (284), Expect = 1.9e-25 Identity = 77/196 (39.29%), Postives = 109/196 (55.61%), Query Frame = 0
BLAST of HG10008449 vs. TAIR 10
Match: AT1G67100.1 (LOB domain-containing protein 40 ) HSP 1 Score: 105.5 bits (262), Expect = 6.7e-23 Identity = 60/133 (45.11%), Postives = 80/133 (60.15%), Query Frame = 0
BLAST of HG10008449 vs. TAIR 10
Match: AT1G68510.1 (LOB domain-containing protein 42 ) HSP 1 Score: 91.7 bits (226), Expect = 1.0e-18 Identity = 57/122 (46.72%), Postives = 76/122 (62.30%), Query Frame = 0
BLAST of HG10008449 vs. TAIR 10
Match: AT3G49940.1 (LOB domain-containing protein 38 ) HSP 1 Score: 72.8 bits (177), Expect = 4.8e-13 Identity = 29/49 (59.18%), Postives = 40/49 (81.63%), Query Frame = 0
BLAST of HG10008449 vs. TAIR 10
Match: AT4G37540.1 (LOB domain-containing protein 39 ) HSP 1 Score: 72.0 bits (175), Expect = 8.2e-13 Identity = 29/50 (58.00%), Postives = 40/50 (80.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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