HG10008424 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10008424
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr10: 23018648 .. 23018899 (+)
RNA-Seq ExpressionHG10008424
SyntenyHG10008424
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAGAAGAAGATATGAAAGACTAAGAAGTGAAGATAATGCTGAATTATTAGTTGATGAAGAAAACAAAATCAAGAACAAGAATCCAACTATAATACTTGGAGGAGGAAGAAGAAGAAATCTTGTAGAGTTATGGAAGAAAATGGAAGGAAAAGCAAAATTAGGACTGCCCTTCAAGAGGTTTATAGCTACTTATGAAGCAATGATGCTTTGCTTTGCCCACAAGTTTGTGCTGCCTCAACAATGGTAA

mRNA sequence

ATGGGGAGAAGAAGATATGAAAGACTAAGAAGTGAAGATAATGCTGAATTATTAGTTGATGAAGAAAACAAAATCAAGAACAAGAATCCAACTATAATACTTGGAGGAGGAAGAAGAAGAAATCTTGTAGAGTTATGGAAGAAAATGGAAGGAAAAGCAAAATTAGGACTGCCCTTCAAGAGGTTTATAGCTACTTATGAAGCAATGATGCTTTGCTTTGCCCACAAGTTTGTGCTGCCTCAACAATGGTAA

Coding sequence (CDS)

ATGGGGAGAAGAAGATATGAAAGACTAAGAAGTGAAGATAATGCTGAATTATTAGTTGATGAAGAAAACAAAATCAAGAACAAGAATCCAACTATAATACTTGGAGGAGGAAGAAGAAGAAATCTTGTAGAGTTATGGAAGAAAATGGAAGGAAAAGCAAAATTAGGACTGCCCTTCAAGAGGTTTATAGCTACTTATGAAGCAATGATGCTTTGCTTTGCCCACAAGTTTGTGCTGCCTCAACAATGGTAA

Protein sequence

MGRRRYERLRSEDNAELLVDEENKIKNKNPTIILGGGRRRNLVELWKKMEGKAKLGLPFKRFIATYEAMMLCFAHKFVLPQQW
Homology
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BLAST of HG10008424 vs. NCBI nr
Match: KAG6587665.1 (hypothetical protein SDJN03_16230, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 91.7 bits (226), Expect = 3.3e-15
Identity = 55/88 (62.50%), Postives = 63/88 (71.59%), Query Frame = 0 

Query: 2  GRRRYERLRSEDNAELLVDEENKIKNKNPTIILGGG----RRRNL-VELWKKMEGKA-KL 61
          GRRRYERLR E +   + +E+N IKN   T+  GGG    RR N  VELWKKMEG + KL
Sbjct: 4  GRRRYERLRRESSE--VDEEQNHIKNSAITLGGGGGWKGRRRSNQGVELWKKMEGSSPKL 63

Query: 62 GLPFKRFIATYEAMMLCFAHKFVLPQQW 84
          G PFK FIATYEA+ML FAHK V+PQQW
Sbjct: 64 GHPFKTFIATYEAIMLYFAHKLVMPQQW 89

The following BLAST results are available for this feature:
BLAST of HG10008424 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6587665.13.3e-1562.50hypothetical protein SDJN03_16230, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of HG10008424 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10008424 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10008424 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10008424.1HG10008424.1mRNA