HG10008403 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10008403
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr10: 22880715 .. 22882426 (-)
RNA-Seq ExpressionHG10008403
SyntenyHG10008403
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGTCTGTGGAGTTTATATGTCTGTGGGGTTCATATGTCTGTGTTTTGGCTGTTTGGGGTGCTGAGTTCATATGTCAGATGCAGTTTTCCTTTTTTTACATAAATAATCTGTTTTTATGATGATTGTTTTTGTTTAGAAACTTGATAAATGACACCTTATTCTAGGTGAACCCCACAACAATAATAAAAATAACCCCTATTAACAAAATTTGATAGACAACCCCAAGAAAACTAAACAGTTTTGGATTGGAAAGAATTGATCAAAAATCATGAAGAAAGAGAACTTGTTCCTAACTTCAAGATTTCGAACTTCCCACAATCTAATTGATCAGACTAGATTCAAAGTTTTAAAACATGCATTCTAACACAAGAATACAAAGAAAGCATAAAACTTGAGAGATTAGACTTTGAAAATTTCATTCAAATTCAAATTCTTCTTTTAAAATGAATTAATCTACACCCAAATATAAATACATAAAATTAAATTGGATACATAGGACATTAAATATGTGAGTGAATCTGGATTTTTAGATTCATTATGAATCTGGGATGAAAATGTGTATCTTGAAGCTTGAATTGTTGCAATTTTTCACCAAAGGTAGGAACCTTAGCTTGGAAGTAACTCTTTAAGTTGATGTCTACTTATTTTCTTATCAAAAAATTTTTATTCAATAATTCTACATATTTTTTTTAGCACACATGTATTGTTGGTAGTTTTGGAAAATGGGGTTTAGGATTTACTTTTGGATTATGCATTTCAATTTTTTTTTAATTTAAGCAATCATTTTACAAATTTGTGCATGTGGCGTTTCTAGTTAGGTCATTTTTATTTTAATACTTTTGATAAAAACTTTTTAAAATAAAAACCACTCATGTGAAAACATTTTAAAATAAAAACCACTCATGTGTCTAATAATTTTTTCTCAATAGTGTTTTTATATACAAATTGTTTGATTTCTTACATGATTAAAGTGATTGTATGAATGTTCAATTACTATAAAGAATGACTATAAAATACTAATGAACTAATAAAAAAAAATCGGGAATTCAACATTTTGATGGAACTTACGTACTTTTGTGTCAACAAAGGTGTTTTTATTGACAATTTTGTGCGGCAACCTAAATATAAACATTTAGGAGAAGTCAAGGCGCTTAGTTGGTTATTATAGTCAGTAGGTTATAATAGTTAGTGTTTGGGGTGCAGACTATTATAGCCTAAGTTATAATAGTTTGTAATTGGGGTATAAACTTTTTTGTTTAAGTAGAAAATAGTAAATATTGTAACAAAGAAAAAAAAGAGAGGATGAGTGAAAAATAGTAACTGTAGCAAAGAGGGTTTTGAGTAGTAGTCATAATTTAAAAGAGATGATGTATCAACAAAACTCAAATTTGTAGTAGTTATAATTTAAAATAATGGTTGTAGGAGTGGTGGAGTGACCGCCATTAGAGGTCGCTGGAGTTGGCCATCAACAATAGTGGTTAGATGTTGCCAAAGTTGGCCACATGTGGTAGTTGTCGGAGCTGGTTGTTGGAGGCGATCGCTGGAGTTGGCCGCAACAATGGTGGTTAATGTTGCTGGAGTTGGCTGCATGCGATGGTTGCCGGAGGTAATCGCCGAAGTTGGTCGTCGGAGGTGGTCGCCGGAGTTGGTCGTCGCATGTGGTTGCCGAAATTGGTCGTCAGAGGTGGTCGCTGGTGATGTGAGCTGA

mRNA sequence

ATGATGAGTGGTGGAGTGACCGCCATTAGAGGTCGCTGGAGTTGGCCATCAACAATAGTGGTTAGATGTTGCCAAAGTTGGCCACATGTGGTAGTTGTCGGAGCTGGTTGTTGGAGGCGATCGCTGGAGTTGGCCGCAACAATGGTGGTTAATGTTGCTGGAGTTGGCTGCATGCGATGGTTGCCGGAGGTAATCGCCGAAGTTGGTCGTCGGAGGTGGTCGCCGGAGTTGGTCGTCGCATGTGGTTGCCGAAATTGGTCGTCAGAGGTGGTCGCTGGTGATGTGAGCTGA

Coding sequence (CDS)

ATGATGAGTGGTGGAGTGACCGCCATTAGAGGTCGCTGGAGTTGGCCATCAACAATAGTGGTTAGATGTTGCCAAAGTTGGCCACATGTGGTAGTTGTCGGAGCTGGTTGTTGGAGGCGATCGCTGGAGTTGGCCGCAACAATGGTGGTTAATGTTGCTGGAGTTGGCTGCATGCGATGGTTGCCGGAGGTAATCGCCGAAGTTGGTCGTCGGAGGTGGTCGCCGGAGTTGGTCGTCGCATGTGGTTGCCGAAATTGGTCGTCAGAGGTGGTCGCTGGTGATGTGAGCTGA

Protein sequence

MMSGGVTAIRGRWSWPSTIVVRCCQSWPHVVVVGAGCWRRSLELAATMVVNVAGVGCMRWLPEVIAEVGRRRWSPELVVACGCRNWSSEVVAGDVS
Homology
[Close]
BLAST of HG10008403 vs. NCBI nr
Match: XP_010501877.1 (PREDICTED: uncharacterized protein LOC104779199 [Camelina sativa] >XP_010501878.1 PREDICTED: uncharacterized protein LOC104779200 [Camelina sativa])

HSP 1 Score: 56.6 bits (135), Expect = 1.4e-04
Identity = 33/71 (46.48%), Postives = 39/71 (54.93%), Query Frame = 0 

Query: 30 VVVVGAGCWRRSLELA------ATMVVNVAGVGCMRWLPEVIAEVGRRRWSPELVVACGC 89
          +VV G G  R S EL       + +   VAG G   W P V+A VGRR WSP +V   G 
Sbjct: 1  MVVAGVGRRRWSPELVDGVGRRSCLPELVAGGGRRSWSPAVVAGVGRRSWSPAMVAGVGR 60

Query: 90 RNWSSEVVAGD 95
          R WS E+VAGD
Sbjct: 61 RRWSPELVAGD 71

The following BLAST results are available for this feature:
BLAST of HG10008403 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_010501877.11.4e-0446.48PREDICTED: uncharacterized protein LOC104779199 [Camelina sativa] >XP_010501878.... [more]
BLAST of HG10008403 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10008403 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10008403 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10008403.1HG10008403.1mRNA