HG10008376 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10008376
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Ribosomal protein L19
Location	Chr10: 22668943 .. 22670395 (-)
RNA-Seq Expression	HG10008376
Synteny	HG10008376

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTCTCTTACCCTACAAAAGCGGCTTGCCGCCAGCAGCCTCGACTGCGGCAAACGTCGAGTATGGCTTGATCCCAACGAGACCACCACCATCTCTTTAGCCAATTCAAGTAAGTACAACAACTTTTCTAGAATTACATCTTTTTTTTTTTTTTTCTCCTTTCTTTTTCTATGCTAAACTTGATCAATCGTGAAGTTTGCTCAAGAGAAAGAGTGAAGAAAATAAAAGGTTGGACATGTTTGGAAGTGATTTTGACCTGGTCAAAATCTCTTTTTCTCTTGCAAAATCATTTCTCAATGTTTGGGATTGAATAAAATTGATTTTAGAAGAATTAGTTGCTATGTATTTGAGGTGATTGAATAAGAATCAATCCAAAAAATGACTATCTAGTTCATTTTTGTTAAAATATTGTTGGTTAGCTAGTTGTGAAACTATTAATTTTTATTTAAATCATCGGCTAAGAGATGACAAACATTGTTTGTCATGAAACAAATTGCATAATAATTAAGATTAAATAAGATATATGTTTTGAATTTTCTTTTGATATTTATTATACACATTTTTCTTACTCAATATATCAATCATGCATATAAATGTTAAACAATAAAACAAATGAAAAAAATATATTTATCATAACTATTTTGTTAAATAAGTTCTCAAATAGAAAATACTCTTTTTAGTAATTTGATAATTCTAAAATCACTTTTGGAGCCAAACATAATAATTCAAAATCACTTTTAAATATAAATGAAAATCACTTTTAAGAGTTTGAAACCAAATATAAATGTAATTGTATAAAAATCAATTTCCCACAAACAATTGTACCTAAATTTCTTTTTCTAAAATCACTACTTCAACCATCAATATAAAACATGCTTTTAGTATAATTGATTCTACCAAATACAGATTTAACACAAGAGTGAACAATGAATTATTTAGTTTTAGGAAAGAATTTTGTACCTGATATTGACAATTCAAGCAGCAAACTTGTTTCTAAAAGAACAAAAACATTTTAACTAGAAAACATTTTCAACTGTCAGGAATGAGCATCAGAAAGCTCATAAAAGATGGCTTGATCATCAAAAGGTTGATGACAACCCACTCAAAATCCCGATCTCGACAACGACGTGAAGCAAAATCGAGAGGACGACACTCAGGGAATGGAAAACGAAGAGGAACAAAGGAAGCAAGGTTACCTACAAAGCTGCTATGGATGAGAAGAATGAGAGTCCTCCGAAGATTACTGCGCAAATACAGAGAATGTGAGAAGATAGATAAGCATATTTATCATCAAATGTATATTAGAGTGAAGGGAAACGTCTACAAAAACAAACGTGTGCTAATGGAAAGCATTCACAAGGTCAAGGCTGAAAAAGCATTAGAAAAAACACTTTCTGTTCAGGTTGAGGCCAAGAGAGCAATAAATAGTAAATCCACAATAAGGTTGTAA

mRNA sequence

ATGGTGTCTCTTACCCTACAAAAGCGGCTTGCCGCCAGCAGCCTCGACTGCGGCAAACGTCGAGTATGGCTTGATCCCAACGAGACCACCACCATCTCTTTAGCCAATTCAAGAATGAGCATCAGAAAGCTCATAAAAGATGGCTTGATCATCAAAAGGTTGATGACAACCCACTCAAAATCCCGATCTCGACAACGACGTGAAGCAAAATCGAGAGGACGACACTCAGGGAATGGAAAACGAAGAGGAACAAAGGAAGCAAGGTTACCTACAAAGCTGCTATGGATGAGAAGAATGAGAGTCCTCCGAAGATTACTGCGCAAATACAGAGAATGTGAGAAGATAGATAAGCATATTTATCATCAAATGTATATTAGAGTGAAGGGAAACGTCTACAAAAACAAACGTGTGCTAATGGAAAGCATTCACAAGGTCAAGGCTGAAAAAGCATTAGAAAAAACACTTTCTGTTCAGGTTGAGGCCAAGAGAGCAATAAATAGTAAATCCACAATAAGGTTGTAA

Coding sequence (CDS)

ATGGTGTCTCTTACCCTACAAAAGCGGCTTGCCGCCAGCAGCCTCGACTGCGGCAAACGTCGAGTATGGCTTGATCCCAACGAGACCACCACCATCTCTTTAGCCAATTCAAGAATGAGCATCAGAAAGCTCATAAAAGATGGCTTGATCATCAAAAGGTTGATGACAACCCACTCAAAATCCCGATCTCGACAACGACGTGAAGCAAAATCGAGAGGACGACACTCAGGGAATGGAAAACGAAGAGGAACAAAGGAAGCAAGGTTACCTACAAAGCTGCTATGGATGAGAAGAATGAGAGTCCTCCGAAGATTACTGCGCAAATACAGAGAATGTGAGAAGATAGATAAGCATATTTATCATCAAATGTATATTAGAGTGAAGGGAAACGTCTACAAAAACAAACGTGTGCTAATGGAAAGCATTCACAAGGTCAAGGCTGAAAAAGCATTAGAAAAAACACTTTCTGTTCAGGTTGAGGCCAAGAGAGCAATAAATAGTAAATCCACAATAAGGTTGTAA

Protein sequence

MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLMTTHSKSRSRQRREAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIYHQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSVQVEAKRAINSKSTIRL

Homology

[Close]

BLAST of HG10008376 vs. NCBI nr
Match: XP_008453495.1 (PREDICTED: 60S ribosomal protein L19-3-like [Cucumis melo])

HSP 1 Score: 301.6 bits (771), Expect = 4.4e-78
Identity = 163/173 (94.22%), Postives = 168/173 (97.11%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLMTTHSK 60
           MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRL TTHSK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60

Query: 61  SRSRQRREAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           SRSRQR +AKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYR+ EKID+HIY
Sbjct: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSVQVEAKRAINSKSTIRL 174
           HQMYIRVKGNVYKNKRVLMESIHKVK EKALEKTLS+QVEAKRAINSK+ IRL
Sbjct: 121 HQMYIRVKGNVYKNKRVLMESIHKVKTEKALEKTLSIQVEAKRAINSKAIIRL 173

[Close]

BLAST of HG10008376 vs. NCBI nr
Match: XP_038879968.1 (60S ribosomal protein L19-1-like [Benincasa hispida])

HSP 1 Score: 301.2 bits (770), Expect = 5.7e-78
Identity = 162/173 (93.64%), Postives = 168/173 (97.11%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLMTTHSK 60
           MVSLTLQKRLAASSLDCGKRRVWLDP ET TISLANSRMSIRKLIKDGLIIKRL TTHSK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRRVWLDPAETVTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60

Query: 61  SRSRQRREAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           SRSR+R +AKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY
Sbjct: 61  SRSRRRSDAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSVQVEAKRAINSKSTIRL 174
           HQMYIRVKGNVYKNKRVLMESIHKVKAEKA EKTLS+Q+EAKRAINSK+T+RL
Sbjct: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKASEKTLSIQLEAKRAINSKATVRL 173

[Close]

BLAST of HG10008376 vs. NCBI nr
Match: KAA0058145.1 (60S ribosomal protein L19-3-like [Cucumis melo var. makuwa])

HSP 1 Score: 299.7 bits (766), Expect = 1.7e-77
Identity = 162/173 (93.64%), Postives = 168/173 (97.11%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLMTTHSK 60
           MVSLTLQKRLAASSLDCGKRRVWLDPNETTT SLANSRMSIRKLIKDGLIIKRL TTHSK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTTSLANSRMSIRKLIKDGLIIKRLTTTHSK 60

Query: 61  SRSRQRREAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           SRSRQR +AKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYR+ EKID+HIY
Sbjct: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSVQVEAKRAINSKSTIRL 174
           HQMYIRVKGNVYKNKRVLMESIHKVKAE+ALEKTLS+QVEAKRAINSK+ IRL
Sbjct: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEQALEKTLSIQVEAKRAINSKAIIRL 173

[Close]

BLAST of HG10008376 vs. NCBI nr
Match: KGN63882.1 (hypothetical protein Csa_013191 [Cucumis sativus])

HSP 1 Score: 297.0 bits (759), Expect = 1.1e-76
Identity = 161/173 (93.06%), Postives = 168/173 (97.11%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLMTTHSK 60
           MVSLTLQKRLAASSL+CGKRRVWLDP+ETTTISLANSRMSIRKLIKDGLIIKRL TTHSK
Sbjct: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60

Query: 61  SRSRQRREAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           SRSRQR +AKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYR+ EKID+HIY
Sbjct: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSVQVEAKRAINSKSTIRL 174
           HQMYIRVKGNVYKNKRVLMESIHKV AEKALEKTLS+QVEAKRAINSK+ IRL
Sbjct: 121 HQMYIRVKGNVYKNKRVLMESIHKVHAEKALEKTLSIQVEAKRAINSKAIIRL 173

[Close]

BLAST of HG10008376 vs. NCBI nr
Match: XP_022988450.1 (60S ribosomal protein L19-1-like [Cucurbita maxima])

HSP 1 Score: 282.3 bits (721), Expect = 2.7e-72
Identity = 152/171 (88.89%), Postives = 159/171 (92.98%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLMTTHSK 60
           MVSLTLQKRLAASSLDCGKRRVWLDPNET  ISLANSRMSIRKLIKDGLIIKR  T HSK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCNISLANSRMSIRKLIKDGLIIKRTTTIHSK 60

Query: 61  SRSRQRREAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            RSRQ REAKSRGRHSG GKRRGTKEARLPTKLLWMRRMR+LRRLLRKYRECEKIDKHIY
Sbjct: 61  FRSRQSREAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRILRRLLRKYRECEKIDKHIY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSVQVEAKRAINSKSTI 172
           H+MY RVKGNVYKNKRVLME+IHKVK+EKA E+TLS QVEAKRA NSK+T+
Sbjct: 121 HEMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATV 171

[Close]

BLAST of HG10008376 vs. ExPASy Swiss-Prot
Match: Q9SRX2 (60S ribosomal protein L19-1 OS=Arabidopsis thaliana OX=3702 GN=RPL19A PE=2 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 3.6e-59
Identity = 124/172 (72.09%), Postives = 146/172 (84.88%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLMTTHSK 60
           MVSL LQKRLAAS + CGK +VWLDPNE++ IS+ANSR +IRKL+KDG II++    HS+
Sbjct: 1   MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRQRREAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           SR+R+ + AK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRRLL+KYRE +KIDKH+Y
Sbjct: 61  SRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSVQVEAKRAINSKSTIR 173
           H MY+RVKGNV+KNKRVLMESIHK KAEKA EKTLS Q EAKRA N  S  R
Sbjct: 121 HDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRER 172

[Close]

BLAST of HG10008376 vs. ExPASy Swiss-Prot
Match: P49693 (60S ribosomal protein L19-3 OS=Arabidopsis thaliana OX=3702 GN=RPL19C PE=2 SV=3)

HSP 1 Score: 228.4 bits (581), Expect = 6.2e-59
Identity = 124/172 (72.09%), Postives = 145/172 (84.30%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLMTTHSK 60
           MVSL LQKRLA+S L CGKR+VWLDPNE + IS+ANSR +IRKL+KDG II++    HS+
Sbjct: 1   MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRQRREAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           SR+RQ   AK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRRLL+KYRE +KID+H+Y
Sbjct: 61  SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSVQVEAKRAINSKSTIR 173
           H MY++VKGNV+KNKRVLMESIHK KAEKA EKTLS Q EAKRA N  S  R
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRER 172

[Close]

BLAST of HG10008376 vs. ExPASy Swiss-Prot
Match: Q9LUQ6 (60S ribosomal protein L19-2 OS=Arabidopsis thaliana OX=3702 GN=RPL19B PE=2 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 5.8e-57
Identity = 119/172 (69.19%), Postives = 142/172 (82.56%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLMTTHSK 60
           MVSL +QKRLAAS + CGK +VWLDPNE+  IS+ANSR +IRKL+KDG II++    HS+
Sbjct: 1   MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRQRREAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           SR+R   EAK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRR L KYRE +KID+H+Y
Sbjct: 61  SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSVQVEAKRAINSKSTIR 173
           H MY++VKGNV+KNKRVLMESIHK+KAEKA EKTL+ Q EAKR  N  S  R
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKNKASRER 172

[Close]

BLAST of HG10008376 vs. ExPASy Swiss-Prot
Match: P0DJ60 (60S ribosomal protein L19 OS=Tetrahymena thermophila (strain SB210) OX=312017 GN=RPL19 PE=1 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 3.6e-51
Identity = 109/169 (64.50%), Postives = 136/169 (80.47%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLMTTHSK 60
           MVSL LQKRLAAS L CG++R+WLDPNE++ IS+ANSR SIRKLIKDGL++KR    HS+
Sbjct: 1   MVSLRLQKRLAASVLKCGQKRLWLDPNESSEISMANSRASIRKLIKDGLVMKRSTVIHSR 60

Query: 61  SRSRQRREAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           SR+R   EAK +GRH+G+GKR+GT+ AR+PTK+LWMRR RVLRRLLRKYR  +KIDKH Y
Sbjct: 61  SRARAFLEAKRKGRHTGSGKRKGTRNARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSVQVEAKRAINSKS 170
           H+ Y+  KGN+YKNK VL+E+IH  KA+K     L+ Q EA+RA N+ S
Sbjct: 121 HEFYLGSKGNLYKNKTVLIEAIHVSKADKIKSDKLTSQQEARRAKNTAS 169

[Close]

BLAST of HG10008376 vs. ExPASy Swiss-Prot
Match: Q90YU8 (60S ribosomal protein L19 OS=Ictalurus punctatus OX=7998 GN=rpl19 PE=2 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 6.2e-51
Identity = 104/164 (63.41%), Postives = 134/164 (81.71%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLMTTHSK 60
           M  L LQKRLA+S L CGK++VWLDPNET  I+ ANSR +IRKL+KDGLIIK+ +T HS+
Sbjct: 1   MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQAIRKLVKDGLIIKKPVTVHSR 60

Query: 61  SRSRQRREAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           +R R+   A+ +GRH G GKR+GT  AR+P KL WMRRMR+LRRLLR+YRE +KID+H+Y
Sbjct: 61  ARCRKNTLARRKGRHMGIGKRKGTANARMPEKLCWMRRMRILRRLLRRYRESKKIDRHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSVQVEAKRA 165
           H +Y+R KGNV+KNKR+LME IHK+KA++A +K LS Q EA+R+
Sbjct: 121 HSLYLRAKGNVFKNKRILMEHIHKLKADRARKKLLSDQAEARRS 164

[Close]

BLAST of HG10008376 vs. ExPASy TrEMBL
Match: A0A1S3BVU0 (Ribosomal protein L19 OS=Cucumis melo OX=3656 GN=LOC103494191 PE=3 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 2.1e-78
Identity = 163/173 (94.22%), Postives = 168/173 (97.11%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLMTTHSK 60
           MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRL TTHSK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60

Query: 61  SRSRQRREAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           SRSRQR +AKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYR+ EKID+HIY
Sbjct: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSVQVEAKRAINSKSTIRL 174
           HQMYIRVKGNVYKNKRVLMESIHKVK EKALEKTLS+QVEAKRAINSK+ IRL
Sbjct: 121 HQMYIRVKGNVYKNKRVLMESIHKVKTEKALEKTLSIQVEAKRAINSKAIIRL 173

[Close]

BLAST of HG10008376 vs. ExPASy TrEMBL
Match: A0A5A7UX03 (Ribosomal protein L19 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G004560 PE=3 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 8.0e-78
Identity = 162/173 (93.64%), Postives = 168/173 (97.11%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLMTTHSK 60
           MVSLTLQKRLAASSLDCGKRRVWLDPNETTT SLANSRMSIRKLIKDGLIIKRL TTHSK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTTSLANSRMSIRKLIKDGLIIKRLTTTHSK 60

Query: 61  SRSRQRREAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           SRSRQR +AKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYR+ EKID+HIY
Sbjct: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSVQVEAKRAINSKSTIRL 174
           HQMYIRVKGNVYKNKRVLMESIHKVKAE+ALEKTLS+QVEAKRAINSK+ IRL
Sbjct: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEQALEKTLSIQVEAKRAINSKAIIRL 173

[Close]

BLAST of HG10008376 vs. ExPASy TrEMBL
Match: A0A0A0LSW8 (Ribosomal protein L19 OS=Cucumis sativus OX=3659 GN=Csa_1G025150 PE=3 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 5.2e-77
Identity = 161/173 (93.06%), Postives = 168/173 (97.11%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLMTTHSK 60
           MVSLTLQKRLAASSL+CGKRRVWLDP+ETTTISLANSRMSIRKLIKDGLIIKRL TTHSK
Sbjct: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60

Query: 61  SRSRQRREAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           SRSRQR +AKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYR+ EKID+HIY
Sbjct: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSVQVEAKRAINSKSTIRL 174
           HQMYIRVKGNVYKNKRVLMESIHKV AEKALEKTLS+QVEAKRAINSK+ IRL
Sbjct: 121 HQMYIRVKGNVYKNKRVLMESIHKVHAEKALEKTLSIQVEAKRAINSKAIIRL 173

[Close]

BLAST of HG10008376 vs. ExPASy TrEMBL
Match: A0A6J1JJK9 (Ribosomal protein L19 OS=Cucurbita maxima OX=3661 GN=LOC111485694 PE=3 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 1.3e-72
Identity = 152/171 (88.89%), Postives = 159/171 (92.98%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLMTTHSK 60
           MVSLTLQKRLAASSLDCGKRRVWLDPNET  ISLANSRMSIRKLIKDGLIIKR  T HSK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCNISLANSRMSIRKLIKDGLIIKRTTTIHSK 60

Query: 61  SRSRQRREAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            RSRQ REAKSRGRHSG GKRRGTKEARLPTKLLWMRRMR+LRRLLRKYRECEKIDKHIY
Sbjct: 61  FRSRQSREAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRILRRLLRKYRECEKIDKHIY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSVQVEAKRAINSKSTI 172
           H+MY RVKGNVYKNKRVLME+IHKVK+EKA E+TLS QVEAKRA NSK+T+
Sbjct: 121 HEMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATV 171

[Close]

BLAST of HG10008376 vs. ExPASy TrEMBL
Match: A0A6J1E0X8 (Ribosomal protein L19 OS=Cucurbita moschata OX=3662 GN=LOC111429809 PE=3 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 3.9e-72
Identity = 152/171 (88.89%), Postives = 158/171 (92.40%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLMTTHSK 60
           MVSLTLQKRLAASSLDCGKR+VWLDPNET TISLANSRMSIRKLIKDG IIKR  T HSK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRQVWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSK 60

Query: 61  SRSRQRREAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            RSRQ  EAKSRGRHSG GKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY
Sbjct: 61  FRSRQSHEAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSVQVEAKRAINSKSTI 172
           HQMY RVKGNVYKNKRVLME+IHKVK+EKA E+TLS QVEAKRA NSK+T+
Sbjct: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATV 171

[Close]

BLAST of HG10008376 vs. TAIR 10
Match: AT1G02780.1 (Ribosomal protein L19e family protein )

HSP 1 Score: 229.2 bits (583), Expect = 2.6e-60
Identity = 124/172 (72.09%), Postives = 146/172 (84.88%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLMTTHSK 60
           MVSL LQKRLAAS + CGK +VWLDPNE++ IS+ANSR +IRKL+KDG II++    HS+
Sbjct: 1   MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRQRREAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           SR+R+ + AK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRRLL+KYRE +KIDKH+Y
Sbjct: 61  SRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSVQVEAKRAINSKSTIR 173
           H MY+RVKGNV+KNKRVLMESIHK KAEKA EKTLS Q EAKRA N  S  R
Sbjct: 121 HDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRER 172

[Close]

BLAST of HG10008376 vs. TAIR 10
Match: AT4G02230.1 (Ribosomal protein L19e family protein )

HSP 1 Score: 228.4 bits (581), Expect = 4.4e-60
Identity = 124/172 (72.09%), Postives = 145/172 (84.30%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLMTTHSK 60
           MVSL LQKRLA+S L CGKR+VWLDPNE + IS+ANSR +IRKL+KDG II++    HS+
Sbjct: 1   MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRQRREAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           SR+RQ   AK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRRLL+KYRE +KID+H+Y
Sbjct: 61  SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSVQVEAKRAINSKSTIR 173
           H MY++VKGNV+KNKRVLMESIHK KAEKA EKTLS Q EAKRA N  S  R
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRER 172

[Close]

BLAST of HG10008376 vs. TAIR 10
Match: AT3G16780.1 (Ribosomal protein L19e family protein )

HSP 1 Score: 221.9 bits (564), Expect = 4.1e-58
Identity = 119/172 (69.19%), Postives = 142/172 (82.56%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLMTTHSK 60
           MVSL +QKRLAAS + CGK +VWLDPNE+  IS+ANSR +IRKL+KDG II++    HS+
Sbjct: 1   MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRQRREAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           SR+R   EAK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRR L KYRE +KID+H+Y
Sbjct: 61  SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSVQVEAKRAINSKSTIR 173
           H MY++VKGNV+KNKRVLMESIHK+KAEKA EKTL+ Q EAKR  N  S  R
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKNKASRER 172

[Close]

BLAST of HG10008376 vs. TAIR 10
Match: AT4G16030.1 (Ribosomal protein L19e family protein )

HSP 1 Score: 61.6 bits (148), Expect = 7.1e-10
Identity = 48/118 (40.68%), Postives = 73/118 (61.86%), Query Frame = 0


Query: 54  LMTTHSKSRSRQRREAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECE 113
           +++ H  SRSR RR+     RH+G GK   T EA         RR+++L+RLL+K+   +
Sbjct: 1   MVSIHFHSRSRARRKC----RHTGYGK--DTMEALRRIMKRLTRRLKMLKRLLKKFCWNK 60

Query: 114 KIDKHI-YHQMYIRVKGNVYKNKRVLMESIHKVKAEKAL---EKTLSVQVEAKRAINS 168
           KIDK + YH M+++VKG VYKNK VLMES+HK   E+     E  L+++ E ++  ++
Sbjct: 61  KIDKLVYYHDMFMKVKGKVYKNKCVLMESMHKSSRERKFSGSEMRLALEPEGEKTASA 112

The following BLAST results are available for this feature:

BLAST of HG10008376 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008453495.1	4.4e-78	94.22	PREDICTED: 60S ribosomal protein L19-3-like [Cucumis melo]	[more]
XP_038879968.1	5.7e-78	93.64	60S ribosomal protein L19-1-like [Benincasa hispida]	[more]
KAA0058145.1	1.7e-77	93.64	60S ribosomal protein L19-3-like [Cucumis melo var. makuwa]	[more]
KGN63882.1	1.1e-76	93.06	hypothetical protein Csa_013191 [Cucumis sativus]	[more]
XP_022988450.1	2.7e-72	88.89	60S ribosomal protein L19-1-like [Cucurbita maxima]	[more]

BLAST of HG10008376 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SRX2	3.6e-59	72.09	60S ribosomal protein L19-1 OS=Arabidopsis thaliana OX=3702 GN=RPL19A PE=2 SV=1	[more]
P49693	6.2e-59	72.09	60S ribosomal protein L19-3 OS=Arabidopsis thaliana OX=3702 GN=RPL19C PE=2 SV=3	[more]
Q9LUQ6	5.8e-57	69.19	60S ribosomal protein L19-2 OS=Arabidopsis thaliana OX=3702 GN=RPL19B PE=2 SV=1	[more]
P0DJ60	3.6e-51	64.50	60S ribosomal protein L19 OS=Tetrahymena thermophila (strain SB210) OX=312017 GN...	[more]
Q90YU8	6.2e-51	63.41	60S ribosomal protein L19 OS=Ictalurus punctatus OX=7998 GN=rpl19 PE=2 SV=1	[more]

BLAST of HG10008376 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BVU0	2.1e-78	94.22	Ribosomal protein L19 OS=Cucumis melo OX=3656 GN=LOC103494191 PE=3 SV=1	[more]
A0A5A7UX03	8.0e-78	93.64	Ribosomal protein L19 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27...	[more]
A0A0A0LSW8	5.2e-77	93.06	Ribosomal protein L19 OS=Cucumis sativus OX=3659 GN=Csa_1G025150 PE=3 SV=1	[more]
A0A6J1JJK9	1.3e-72	88.89	Ribosomal protein L19 OS=Cucurbita maxima OX=3661 GN=LOC111485694 PE=3 SV=1	[more]
A0A6J1E0X8	3.9e-72	88.89	Ribosomal protein L19 OS=Cucurbita moschata OX=3662 GN=LOC111429809 PE=3 SV=1	[more]

BLAST of HG10008376 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G02780.1	2.6e-60	72.09	Ribosomal protein L19e family protein	[more]
AT4G02230.1	4.4e-60	72.09	Ribosomal protein L19e family protein	[more]
AT3G16780.1	4.1e-58	69.19	Ribosomal protein L19e family protein	[more]
AT4G16030.1	7.1e-10	40.68	Ribosomal protein L19e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000196	Ribosomal protein L19/L19e	SMART	SM01416	Ribosomal_L19e_2	coord: 3..146 e-value: 3.1E-81 score: 285.9
IPR000196	Ribosomal protein L19/L19e	PFAM	PF01280	Ribosomal_L19e	coord: 4..145 e-value: 1.3E-57 score: 193.9
IPR015972	Ribosomal protein L19/L19e, domain 1	GENE3D	1.10.1650.10		coord: 1..54 e-value: 9.6E-26 score: 91.4
None	No IPR available	GENE3D	1.10.1200.240		coord: 57..172 e-value: 2.6E-45 score: 155.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..79
None	No IPR available	PANTHER	PTHR10722:SF5	60S RIBOSOMAL PROTEIN L19-2	coord: 1..172
IPR039547	60S ribosomal protein L19	PANTHER	PTHR10722	60S RIBOSOMAL PROTEIN L19	coord: 1..172
IPR023638	Ribosomal protein L19/L19e conserved site	PROSITE	PS00526	RIBOSOMAL_L19E	coord: 7..26
IPR033935	Ribosomal protein L19, eukaryotic	CDD	cd01417	Ribosomal_L19e_E	coord: 4..166 e-value: 1.60253E-66 score: 198.728
IPR035970	Ribosomal protein L19/L19e superfamily	SUPERFAMILY	48140	Ribosomal protein L19 (L19e)	coord: 3..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10008376.1	HG10008376.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome